# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkeA 152 1.41e+00 b.55.1.4 79231 1theA 260 1.50e+00 1theB d.3.1.1 37056 1v52A 133 1.54e+00 1iq4A 179 1.59e+00 1iq4A d.77.1.1 62641 1g5cA 170 2.16e+00 1g5cA c.53.2.1 60264 1k3iA 656 3.03e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1gof 639 3.38e+00 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1gmyA 261 3.59e+00 d.3.1.1 76236 2djkA 133 3.62e+00 1p5hA 428 4.06e+00 c.123.1.1 87802 1ok0A 74 4.18e+00 b.5.1.1 93191 1hoe 74 4.69e+00 1hoe b.5.1.1 22833 1dq3A 454 5.97e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1po5A 476 6.77e+00 a.104.1.1 94963 1mszA 86 7.18e+00 d.68.7.1 79428 1fdr 248 8.04e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1b7yB 785 9.08e+00 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1tif 78 9.66e+00 1tif d.15.8.1 37836 2cxaA 256 9.83e+00 1wi6A 88 1.00e+01 2sas 185 1.15e+01 2sas a.39.1.5 17258 1bkf 107 1.19e+01 1fkj d.26.1.1 38382 2a7yA 83 1.22e+01 1ykjA 394 1.30e+01 1kskA 234 1.48e+01 d.66.1.5,d.265.1.3 72920,90389 1k0iA 394 1.50e+01 c.3.1.2,d.16.1.2 67942,67943 1yovA 537 1.69e+01 1el5A 389 1.73e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1qsgA 265 1.84e+01 1eny c.2.1.2 29935 1ekgA 127 1.85e+01 1dlxA d.82.2.1 40021 1pbe 394 1.90e+01 1pbe c.3.1.2,d.16.1.2 30338,37869 1xtaA 221 1.96e+01 1j83A 180 2.13e+01 b.18.1.12 66430 1fnd 314 2.16e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1vsd 152 2.27e+01 1cxqA c.55.3.2 33625 1dz3A 130 2.29e+01 1dz3A c.23.1.1 31105 1zo0A 126 2.34e+01 1i2aA 219 2.34e+01 e.24.1.1 90660 2f2gA 221 2.39e+01 1fnc 314 2.43e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1ru8A 232 2.49e+01 c.26.2.1 97849 1cxqA 162 2.54e+01 1cxqA c.55.3.2 33621 1obwA 175 2.57e+01 2prd b.40.5.1 25416 1w2yA 229 2.62e+01 a.204.1.1 109140 1ew0A 130 2.69e+01 1drmA d.110.3.2 40905 1t5iA 172 2.74e+01 c.37.1.19 106450 1ybiA 288 2.87e+01 1i40A 175 2.95e+01 b.40.5.1 66024 1kjs 74 3.03e+01 1kjs a.50.1.1 17792 3rabA 169 3.10e+01 1ctqA c.37.1.8 32018 1cfr 285 3.12e+01 1cfr c.52.1.7 33312 1ru4A 400 3.16e+01 b.80.1.9 97836 1a8vA 121 3.21e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1rc9A 221 3.24e+01 2gjgA 248 3.25e+01 5cytR 104 3.26e+01 1ycc a.3.1.1 15878 1a6wL 109 3.29e+01 1mfa b.1.1.1 20252 1fgkA 310 3.30e+01 1fgkA d.144.1.7 41693 1vhqA 232 3.33e+01 c.23.16.2 100696 2a9mL 110 3.37e+01 1a62 130 3.49e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1a8h 500 3.57e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1rwjA 82 3.62e+01 a.138.1.1 105114 1lswA 131 3.71e+01 d.110.3.2 78181 1bx1A 314 3.78e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1ro7A 259 3.85e+01 c.130.1.1 97667 2azqA 311 3.92e+01 1at3A 247 3.92e+01 1at3A b.57.1.1 27021 1i58A 189 3.95e+01 1b3qA d.122.1.3 61773 1wu7A 434 4.05e+01 1xj4A 119 4.07e+01 1go3E 187 4.08e+01 b.40.4.5,d.230.1.1 83054,83055 1q4mA 221 4.09e+01 a.132.1.3 95805 1ml9A 302 4.19e+01 b.85.7.1 79282 1hlvA 131 4.43e+01 a.4.1.7,a.4.1.7 65854,65855 1n91A 108 4.70e+01 d.206.1.1 80326 2g6bA 180 4.70e+01 1vddA 228 4.76e+01 e.49.1.1 108519 2d13A 227 4.76e+01 1oaqL 120 4.83e+01 b.1.1.1 92708 1rypI 222 4.86e+01 d.153.1.4 41877 2be1A 339 4.95e+01 1pqhA 143 4.96e+01 b.52.2.1 95017 2gxfA 142 5.04e+01 2cveA 191 5.05e+01 1wh5A 80 5.13e+01 1a4pA 96 5.14e+01 1b4cA a.39.1.2 17176 1rwiA 270 5.22e+01 b.68.9.1 97987 1pvyA 227 5.23e+01 d.115.1.2 95195 2bcmA 165 5.26e+01 1iloA 77 5.30e+01 c.47.1.1 66205 1keaA 221 5.34e+01 a.96.1.2 68491 1kx5B 102 5.36e+01 a.22.1.1 77594 1snnA 227 5.41e+01 d.115.1.2 105821 1ihjA 98 5.59e+01 1pdr b.36.1.1 62382 1i4uA 181 5.85e+01 b.60.1.1 61732 1gxuA 91 5.90e+01 d.58.10.1 76378 1ee6A 197 5.90e+01 1ee6A b.80.1.1 28024 1p5vA 235 6.04e+01 b.1.11.1,b.7.2.1 87812,87813 1hq3D 103 6.06e+01 1aoiB a.22.1.1 16464 1mvwB 145 6.09e+01 i.15.1.1 79524 1woyA 500 6.22e+01 1sqwA 188 6.44e+01 5eau 548 6.55e+01 5eat a.102.4.1,a.128.1.3 18851,19443 2g6fX 59 6.59e+01 1cojA 212 6.60e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1td4A 115 6.72e+01 1vk6A 269 6.84e+01 d.113.1.4,d.113.1.4 100851,100852 1rybA 212 6.92e+01 c.56.3.1 98098 1tzyD 103 6.95e+01 a.22.1.1 107533 1rsy 152 7.01e+01 1rsy b.7.1.2 23192 1dxjA 242 7.12e+01 1cnsA d.2.1.1 36244 1hcd 118 7.17e+01 1hce b.42.5.2 25624 1hgxA 183 7.32e+01 1tc1A c.61.1.1 34027 1dk0A 188 7.34e+01 1b2vA d.35.1.1 38530 1y9wA 140 7.41e+01 1jb9A 316 7.42e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1o6sB 105 7.50e+01 b.1.6.1 81096 2ak5A 64 7.91e+01 1jwiB 125 7.94e+01 d.169.1.1 67384 1zeeA 403 8.04e+01 1s1qA 145 8.10e+01 d.20.1.2 98351 1a76 326 8.10e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1oh0A 131 8.24e+01 d.17.4.3 87004 1kk8B 139 8.33e+01 a.39.1.5 77430 1gvp 87 8.40e+01 1gvp b.40.4.7 25369 1vckA 115 8.42e+01 2dlbA 80 8.51e+01 1wdcB 156 8.73e+01 1wdcB a.39.1.5 17302 1no1A 126 8.85e+01 a.179.1.1 85913 1yuzA 202 8.86e+01 1tuzA 118 8.88e+01 1io1A 398 8.97e+01 1io1A e.32.1.1 62611