# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 8.93e-02 2a2pA 129 1.30e+00 1pmzA 86 1.52e+00 a.39.1.10 104195 1kijA 390 1.82e+00 d.14.1.3,d.122.1.2 72514,72515 1g0sA 209 2.16e+00 1g0sA d.113.1.1 60187 1qtfA 246 3.16e+00 1agjA b.47.1.1 25830 2cokA 113 4.05e+00 1hgxA 183 4.54e+00 1tc1A c.61.1.1 34027 1xcbA 211 5.84e+00 a.4.5.38,c.2.1.12 109552,109553 1ew3A 159 6.25e+00 1mup b.60.1.1 27114 1gpmA 525 6.30e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1zljA 78 7.13e+00 1iloA 77 7.58e+00 c.47.1.1 66205 1kn0A 212 7.61e+00 d.50.1.3 77444 2b0jA 358 8.27e+00 1xzoA 174 8.39e+00 1jmmA 377 1.15e+01 b.30.6.1 71749 1wr2A 238 1.23e+01 1qwdA 177 1.24e+01 b.60.1.1 96471 2ew2A 316 1.25e+01 1meoA 209 1.25e+01 c.65.1.1 79035 1u24A 337 1.25e+01 1r26A 125 1.30e+01 c.47.1.1 96847 1kyhA 276 1.35e+01 c.72.1.4 73222 1theB 260 1.46e+01 1theB d.3.1.1 37057 1theA 260 1.50e+01 1theB d.3.1.1 37056 1vgwA 231 1.74e+01 c.68.1.13 100612 1chmA 401 1.76e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1hjrA 158 1.86e+01 1hjrA c.55.3.6 33727 1nslA 184 1.97e+01 d.108.1.1 86137 1qk3A 233 2.06e+01 1qk3A c.61.1.1 34031 1yezA 68 2.10e+01 1zo0A 126 2.12e+01 1l8nA 679 2.27e+01 c.1.8.10,d.92.2.2 84564,84565 1sg0A 230 2.35e+01 1eal 127 2.35e+01 1hmt b.60.1.2 27227 1qpsA 261 2.40e+01 1ckqA c.52.1.1 33234 1dbrA 231 2.46e+01 1qk3A c.61.1.1 34041 1kppA 145 2.69e+01 d.20.1.2 72846 1ass 159 2.73e+01 1a6dA c.8.5.2 30818 1eriA 276 2.77e+01 1ckqA c.52.1.1 33231 1bymA 97 2.82e+01 1bi0 b.34.1.2 24458 2nef 136 2.89e+01 1efnB d.102.1.1 40704 1pyaB 228 2.99e+01 1pyaB 1p5hA 428 3.00e+01 c.123.1.1 87802 1hlvA 131 3.02e+01 a.4.1.7,a.4.1.7 65854,65855 1eudB 396 3.03e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1ibvB 229 3.05e+01 1k2yX 463 3.05e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1ckqA 276 3.08e+01 1ckqA c.52.1.1 33229 1eucB 396 3.10e+01 2scuB c.23.4.1,d.142.1.4 31149,41570 1kp0A 402 3.14e+01 c.55.2.1,d.127.1.1 72834,72835 1cl8A 276 3.15e+01 1ckqA c.52.1.1 33230 1rznA 205 3.15e+01 1tif 78 3.15e+01 1tif d.15.8.1 37836 3ait 74 3.20e+01 1hoe b.5.1.1 22835 1goh 639 3.24e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21809,23711,27633 1qw1A 121 3.26e+01 1zp7A 206 3.29e+01 1sh0A 510 3.39e+01 e.8.1.4 98876 1n4kA 381 3.44e+01 a.118.22.1,b.42.6.1 79992,79993 2fp4B 395 3.53e+01 1cjbA 231 3.60e+01 1qk3A c.61.1.1 34079 1qk4A 233 3.63e+01 1qk3A c.61.1.1 34037 1rypI 222 3.66e+01 d.153.1.4 41877 1uvzA 119 3.72e+01 2b43A 526 3.73e+01 1zczA 464 3.81e+01 2axcA 264 3.82e+01 1k9uA 78 3.83e+01 a.39.1.10 84348 1kbaA 66 3.84e+01 3ebx g.7.1.1 44431 1vrmA 325 3.88e+01 1h6kX 97 4.05e+01 d.58.7.1 60684 1q79A 514 4.06e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1p5dX 463 4.09e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1w4vA 119 4.15e+01 1g4yR 148 4.19e+01 1cll a.39.1.5 60252 1ru8A 232 4.21e+01 c.26.2.1 97849 1zmaA 118 4.24e+01 1s3cA 141 4.31e+01 1qydA 313 4.33e+01 c.2.1.2 96583 1j58A 385 4.41e+01 b.82.1.2 71531 1ih8A 271 4.43e+01 2nsyA c.26.2.1 62377 2f5gA 133 4.46e+01 1j9bA 141 4.48e+01 c.47.1.12 66459 2fd6U 276 4.50e+01 1k3iA 656 4.50e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1k9dA 679 4.54e+01 c.1.8.10,d.92.2.2 77292,77293 1qc9A 276 4.57e+01 1ckqA c.52.1.1 33235 1wdcB 156 4.59e+01 1wdcB a.39.1.5 17302 1gof 639 4.60e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1i6uA 130 4.70e+01 d.140.1.1 61850 1fc4A 401 4.74e+01 1bs0A c.67.1.4 59760 1t64A 377 4.76e+01 c.42.1.2 106543 2nsyA 271 4.83e+01 2nsyA c.26.2.1 31612 1yruB 74 4.84e+01 1kqpA 271 4.84e+01 c.26.2.1 72883 1mr4A 47 4.89e+01 g.3.7.5 91429 1qtnA 164 4.97e+01 1pauA c.17.1.1 30999 2b9eA 303 5.08e+01 1nsyA 271 5.12e+01 2nsyA c.26.2.1 31614 1gmyA 261 5.23e+01 d.3.1.1 76236 1vetA 124 5.37e+01 d.110.7.1 108553 1f5aA 513 5.39e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1c14A 262 5.47e+01 1eny c.2.1.2 29927 1id3B 102 5.56e+01 a.22.1.1 66113 1h6kZ 98 5.67e+01 d.58.7.1 60686 1csbB 205 5.68e+01 1theB 1fsgA 233 5.70e+01 1qk3A c.61.1.1 34029 1gm6A 175 5.71e+01 b.60.1.1 70272 2amlA 373 5.74e+01 1ahxA 396 5.78e+01 1ajsA c.67.1.1 34293 1df9A 191 6.05e+01 1befA b.47.1.3 26420 1ariA 396 6.07e+01 1ajsA c.67.1.1 34331 1mejA 223 6.08e+01 c.65.1.1 79029 1xl3C 92 6.18e+01 2blnA 305 6.25e+01 1qisA 396 6.26e+01 1ajsA c.67.1.1 34284 1scmB 145 6.29e+01 1wdcB a.39.1.5 17304 1fdr 248 6.31e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1ywhA 313 6.34e+01 1wy2A 351 6.40e+01 1arhA 396 6.43e+01 1ajsA c.67.1.1 34321 1hoe 74 6.45e+01 1hoe b.5.1.1 22833 1vddA 228 6.51e+01 e.49.1.1 108519 1befA 181 6.52e+01 1befA b.47.1.3 26419 1asx 159 6.56e+01 1a6dA c.8.5.2 30821 1spa 396 6.60e+01 1ajsA c.67.1.1 34291 1aiaA 396 6.61e+01 1ajsA c.67.1.1 34306 1txb 73 6.62e+01 1txb g.7.1.1 44455 1kk8B 139 6.62e+01 a.39.1.5 77430 1art 396 6.62e+01 1ajsA c.67.1.1 34285 1ut7A 171 6.63e+01 b.143.1.1 99906 1m6yA 301 6.66e+01 a.60.13.1,c.66.1.23 78716,78717 1skoA 143 6.69e+01 d.110.7.1 105676 1qsgA 265 6.70e+01 1eny c.2.1.2 29935 1osa 148 6.72e+01 1cll a.39.1.5 17300 1aoiB 87 6.76e+01 1aoiB a.22.1.1 16470 1aeiA 315 6.77e+01 1avc a.65.1.1 18180 3cln 148 6.78e+01 1cll a.39.1.5 17286 1emwA 88 6.81e+01 1emwA d.27.1.1 38448 1j8mF 297 6.82e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1hq3D 103 6.82e+01 1aoiB a.22.1.1 16464 1tzyD 103 6.82e+01 a.22.1.1 107533 1cll 148 6.89e+01 1cll a.39.1.5 17263 1s1qA 145 6.97e+01 d.20.1.2 98351 1ars 396 7.02e+01 1ajsA c.67.1.1 34287 1rc9A 221 7.04e+01 1j8yF 297 7.17e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1b7dA 61 7.19e+01 1aho g.3.7.1 44139 1npiA 61 7.19e+01 g.3.7.1 80685 1gl4A 285 7.27e+01 d.22.1.2,g.3.11.5 65286,65287 1exrA 148 7.27e+01 1cll a.39.1.5 17299 1sb2A 133 7.28e+01 2bl0B 145 7.46e+01 2a1vA 144 7.51e+01 1vquA 374 7.51e+01 3pchA 200 7.53e+01 3pchA b.3.6.1 22653 1asg 396 7.56e+01 1ajsA c.67.1.1 34335 1qmeA 702 7.60e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1dm5A 315 7.90e+01 1avc a.65.1.1 18186 1widA 130 7.91e+01 1s3iA 310 7.93e+01 b.46.1.1,c.65.1.1 98435,98436 1aoiF 87 7.93e+01 1aoiB a.22.1.1 16471 1y3nA 490 7.98e+01 1e42A 258 8.06e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 2g30A 258 8.08e+01 2f3yA 148 8.12e+01 2pcdA 200 8.42e+01 3pchA b.3.6.1 22665 1spuB 727 8.48e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24399,38025,38026,40012 1ecfA 504 8.54e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1gngX 39 8.63e+01 1d6zA 727 8.64e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24394,38015,38016,40007 1oacA 727 8.71e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1uu1A 335 8.75e+01 c.67.1.1 99993 2ae8A 221 8.79e+01 1io2A 213 8.85e+01 1ekeA c.55.3.1 62612 1ok0A 74 8.93e+01 b.5.1.1 93191