# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 2.88e-01 1xcbA 211 9.18e-01 a.4.5.38,c.2.1.12 109552,109553 1iloA 77 1.23e+00 c.47.1.1 66205 1gpmA 525 1.37e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1zljA 78 1.37e+00 2a2pA 129 1.75e+00 1ub3A 220 2.86e+00 c.1.10.1 88395 1wd5A 208 3.36e+00 1p5dX 463 3.67e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2cokA 113 4.10e+00 1o4sA 389 4.23e+00 c.67.1.1 86620 1qtnA 164 4.43e+00 1pauA c.17.1.1 30999 2blnA 305 5.55e+00 1wdcC 156 5.81e+00 1wdcC a.39.1.5 17317 1pmzA 86 5.81e+00 a.39.1.10 104195 1tzyD 103 6.50e+00 a.22.1.1 107533 1r26A 125 7.26e+00 c.47.1.1 96847 1yfsA 465 7.32e+00 1lfpA 249 7.60e+00 e.39.1.1 73885 1sglA 209 8.38e+00 d.124.1.1 105536 1vddA 228 9.06e+00 e.49.1.1 108519 2bu3A 254 9.26e+00 1m4rA 151 9.79e+00 a.26.1.3 84799 1tif 78 1.07e+01 1tif d.15.8.1 37836 1vetA 124 1.10e+01 d.110.7.1 108553 1k3iA 656 1.21e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1kqpA 271 1.22e+01 c.26.2.1 72883 1wosA 364 1.22e+01 b.44.2.1,d.250.1.1 109468,109469 1xl3C 92 1.28e+01 1u24A 337 1.33e+01 2g76A 335 1.41e+01 1meoA 209 1.47e+01 c.65.1.1 79035 1qj4A 257 1.62e+01 1qj4A c.69.1.20 34796 1zczA 464 1.66e+01 1hgxA 183 1.67e+01 1tc1A c.61.1.1 34027 2a6hC 1119 1.68e+01 1v8hA 107 1.69e+01 1pme 380 1.69e+01 1hcl d.144.1.7 41653 1m6yA 301 1.70e+01 a.60.13.1,c.66.1.23 78716,78717 2ew2A 316 1.71e+01 1chmA 401 1.80e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1sx5A 244 1.81e+01 c.52.1.2 99023 1f06A 320 1.85e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1y7yA 74 1.91e+01 1dyr 206 1.93e+01 1aoeA c.71.1.1 34916 1wy5A 317 1.99e+01 2bcmA 165 2.02e+01 1x0pA 143 2.04e+01 1wdcB 156 2.05e+01 1wdcB a.39.1.5 17302 2axcA 264 2.21e+01 1sh0A 510 2.22e+01 e.8.1.4 98876 1whzA 70 2.25e+01 1xzoA 174 2.28e+01 1ok7A 366 2.35e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1qwdA 177 2.35e+01 b.60.1.1 96471 1s3cA 141 2.45e+01 1o6yA 299 2.45e+01 d.144.1.7 81106 1zud2 66 2.61e+01 2amlA 373 2.67e+01 1yx4A 132 2.70e+01 2coeA 120 2.76e+01 1wn5A 130 2.78e+01 1sb2A 133 2.82e+01 1iq4A 179 2.85e+01 1iq4A d.77.1.1 62641 1eljA 381 2.88e+01 4mbp c.94.1.1 35791 1wcgA 464 2.93e+01 2b9eA 303 2.93e+01 2cu3A 64 2.96e+01 1el5A 389 3.03e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1y9qA 192 3.04e+01 1d8bA 81 3.10e+01 1d8bA a.60.8.1 18094 1n4kA 381 3.12e+01 a.118.22.1,b.42.6.1 79992,79993 1a8l 226 3.16e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1ta0A 197 3.17e+01 c.108.1.16 106729 1jbeA 128 3.40e+01 3chy c.23.1.1 62845 1s68A 249 3.43e+01 d.142.2.4 98591 1exrA 148 3.48e+01 1cll a.39.1.5 17299 1e87A 118 3.60e+01 1b6e d.169.1.1 42327 1st9A 143 3.61e+01 c.47.1.10 98987 1xrsA 516 3.63e+01 1wlsA 328 3.67e+01 2f9sA 151 3.68e+01 2djkA 133 3.72e+01 1dgwA 178 3.74e+01 1dgwA b.82.1.2 28090 1l1eA 287 3.75e+01 c.66.1.18 73454 1qzzA 374 3.76e+01 a.4.5.29,c.66.1.12 96719,96720 1sur 215 3.83e+01 1sur c.26.2.2 31620 1zo0A 126 3.84e+01 1u6zA 513 3.95e+01 1lgpA 116 3.95e+01 b.26.1.2 73890 1x0vA 354 3.95e+01 1wlgA 299 3.96e+01 2absA 383 3.97e+01 1vfgA 390 3.99e+01 a.173.1.1,d.218.1.4 108570,108571 1vrmA 325 4.01e+01 1l8nA 679 4.03e+01 c.1.8.10,d.92.2.2 84564,84565 1neyA 247 4.20e+01 c.1.1.1 80449 3eipA 84 4.27e+01 3eipA d.26.2.1 38434 1gpjA 404 4.28e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1wy2A 351 4.34e+01 1ttwA 138 4.34e+01 d.198.1.1 107308 1iyhA 198 4.35e+01 a.45.1.1,c.47.1.5 83790,83791 2cvdA 198 4.38e+01 1zg2A 107 4.42e+01 2aotA 292 4.44e+01 1tp6A 128 4.44e+01 d.17.4.12 107184 1ycoA 279 4.52e+01 1xvaA 292 4.53e+01 1xvaA c.66.1.5 34183 1cqqA 180 4.60e+01 1cqqA b.47.1.4 26422 2d13A 227 4.61e+01 1f9yA 158 4.66e+01 d.58.30.1 83249 1kn1A 160 4.68e+01 a.1.1.3 77455 1v58A 241 4.71e+01 c.47.1.9,d.17.3.1 108371,108372 2a4aA 281 4.72e+01 1kk8B 139 4.76e+01 a.39.1.5 77430 1lj5A 379 4.80e+01 e.1.1.1 73928 2bj7A 138 4.82e+01 1hlvA 131 4.83e+01 a.4.1.7,a.4.1.7 65854,65855 1oe4A 247 4.83e+01 c.18.1.3 86895 1un3A 123 4.86e+01 d.5.1.1 99646 1gmlA 178 5.00e+01 c.8.5.2 70273 1p1lA 102 5.15e+01 d.58.5.2 87695 2bwrA 401 5.23e+01 1lqvA 193 5.28e+01 d.19.1.1 74206 1pk6A 133 5.31e+01 b.22.1.1 94801 1knmA 130 5.34e+01 b.42.2.1 72781 1r7mA 235 5.41e+01 1w85I 49 5.42e+01 1qu9A 128 5.42e+01 1qu9A d.79.1.1 39755 1ddgA 374 5.42e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1u55A 188 5.44e+01 d.278.1.1 107677 1ok0A 74 5.45e+01 b.5.1.1 93191 1iybA 208 5.52e+01 d.124.1.1 90720 1gxuA 91 5.53e+01 d.58.10.1 76378 1ars 396 5.58e+01 1ajsA c.67.1.1 34287 2bl0B 145 5.62e+01 1vrbA 342 5.70e+01 2f5gA 133 5.88e+01 2cc0A 195 5.91e+01 1xvwA 160 5.95e+01 1rkqA 282 5.96e+01 c.108.1.10 97621 1y0eA 223 6.07e+01 2g5dA 422 6.07e+01 1wr2A 238 6.16e+01 1i9zA 347 6.17e+01 1i9yA d.151.1.2 62102 1oj4A 283 6.18e+01 d.14.1.5,d.58.26.5 93083,93084 1vhcA 224 6.22e+01 c.1.10.1 100661 1k1vA 41 6.27e+01 a.37.1.1 71999 1lucB 324 6.35e+01 1lucA c.1.16.1 29548 1z5yE 149 6.39e+01 1o9wA 177 6.46e+01 b.2.3.5 86713 1qw1A 121 6.50e+01 2ctoA 93 6.51e+01 1b6rA 355 6.57e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1nf9A 207 6.61e+01 c.33.1.3 85631 1a64A 97 6.83e+01 1cdcA b.1.1.1 19750 1ra0A 430 6.90e+01 1cdcA 99 6.90e+01 1cdcA b.1.1.1 19746 1zc6A 305 7.00e+01 1y97A 238 7.12e+01 2azwA 148 7.12e+01 1ft5A 211 7.13e+01 1bvb a.138.1.3 19681 1fc4A 401 7.16e+01 1bs0A c.67.1.4 59760 1qsgA 265 7.19e+01 1eny c.2.1.2 29935 1hjrA 158 7.22e+01 1hjrA c.55.3.6 33727 2fkiA 126 7.26e+01 2cvlA 124 7.38e+01 1nkqA 259 7.41e+01 d.177.1.1 103862 1gwyA 175 7.41e+01 b.97.1.1 83356 1o26A 232 7.41e+01 d.207.1.1 86566 1g5cA 170 7.48e+01 1g5cA c.53.2.1 60264 1dqeA 137 7.52e+01 1dqeA a.39.2.1 17388 1q15A 503 7.61e+01 c.26.2.1,d.153.1.1 95538,95539 1a6jA 163 7.61e+01 1a6jA d.112.1.1 40915 2cz1B 212 7.71e+01 1nmeA 146 7.76e+01 c.17.1.1 85874 1y1oA 203 7.78e+01 1s6lA 212 7.80e+01 1m45A 148 7.84e+01 a.39.1.5 78598 1yw5A 177 7.90e+01 1yovA 537 7.95e+01 2bl0C 142 8.21e+01 1l0bA 229 8.32e+01 c.15.1.3,c.15.1.3 73391,73392 1vl5A 260 8.39e+01 c.66.1.41 108720 1o50A 157 8.42e+01 d.37.1.1,d.37.1.1 92478,92479 2ffcA 353 8.54e+01 1r3sA 367 8.56e+01 c.1.22.1 96963 1z2lA 423 8.57e+01 1vjgA 218 8.68e+01 c.23.10.6 100810 2fywA 267 8.74e+01 1oxxK 353 8.85e+01 b.40.6.3,c.37.1.12 93715,93716 1n3lA 372 8.91e+01 c.26.1.1 79966 2fyxA 143 8.94e+01 1ep3B 262 8.99e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554