# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a2pA 129 1.62e-01 1iq4A 179 9.15e-01 1iq4A d.77.1.1 62641 1tif 78 3.36e+00 1tif d.15.8.1 37836 1ugnA 198 3.97e+00 b.1.1.4,b.1.1.4 107828,107829 1zo0A 126 4.06e+00 1ok0A 74 5.06e+00 b.5.1.1 93191 1qtnA 164 1.00e+01 1pauA c.17.1.1 30999 2f5gA 133 1.05e+01 2ag4A 164 1.19e+01 1p4xA 250 1.20e+01 a.4.5.28,a.4.5.28 87784,87785 1ew0A 130 1.27e+01 1drmA d.110.3.2 40905 1wr2A 238 1.30e+01 1go3E 187 1.34e+01 b.40.4.5,d.230.1.1 83054,83055 2cxaA 256 1.41e+01 1i58A 189 1.42e+01 1b3qA d.122.1.3 61773 2bvbA 137 1.48e+01 1zljA 78 1.49e+01 1pmzA 86 1.57e+01 a.39.1.10 104195 1yovA 537 1.64e+01 1at3A 247 1.75e+01 1at3A b.57.1.1 27021 1p30A 952 1.84e+01 b.121.2.2,b.121.2.2 93964,93965 1bkf 107 2.00e+01 1fkj d.26.1.1 38382 1f06A 320 2.14e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1g5cA 170 2.16e+01 1g5cA c.53.2.1 60264 2ck3H 146 2.26e+01 1yxcA 292 2.28e+01 2a1vA 144 2.33e+01 1luzA 88 2.55e+01 b.40.4.5 74271 1gzsB 165 2.60e+01 a.168.1.1 76425 1hlvA 131 2.62e+01 a.4.1.7,a.4.1.7 65854,65855 1m6yA 301 2.62e+01 a.60.13.1,c.66.1.23 78716,78717 1rypI 222 2.69e+01 d.153.1.4 41877 2fyxA 143 2.75e+01 1xngA 268 2.83e+01 1s3cA 141 2.85e+01 1vhqA 232 2.91e+01 c.23.16.2 100696 1i2aA 219 2.91e+01 e.24.1.1 90660 1wu7A 434 2.93e+01 1ro7A 259 3.09e+01 c.130.1.1 97667 1i40A 175 3.11e+01 b.40.5.1 66024 1ntyA 311 3.22e+01 a.87.1.1,b.55.1.1 103873,103874 1a4pA 96 3.35e+01 1b4cA a.39.1.2 17176 1nw3A 416 3.37e+01 c.66.1.31 86288 1k9uA 78 3.41e+01 a.39.1.10 84348 1gxuA 91 3.52e+01 d.58.10.1 76378 2ch4A 320 3.53e+01 2dlbA 80 3.55e+01 1n4kA 381 3.55e+01 a.118.22.1,b.42.6.1 79992,79993 1dz3A 130 3.64e+01 1dz3A c.23.1.1 31105 1pzwA 80 3.65e+01 g.39.1.10 95483 1k8kF 168 3.66e+01 d.198.2.1 68312 1s6lA 212 3.68e+01 2bl0B 145 3.77e+01 2f2gA 221 3.77e+01 2fftA 84 3.81e+01 5eau 548 3.88e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1kjs 74 3.95e+01 1kjs a.50.1.1 17792 1xj4A 119 4.02e+01 1t5iA 172 4.08e+01 c.37.1.19 106450 1hgxA 183 4.12e+01 1tc1A c.61.1.1 34027 1u55A 188 4.35e+01 d.278.1.1 107677 2c7pA 327 4.49e+01 2g58A 121 4.82e+01 1qsgA 265 4.82e+01 1eny c.2.1.2 29935 1zczA 464 4.85e+01 1cxqA 162 4.86e+01 1cxqA c.55.3.2 33621 1yqbA 100 4.86e+01 1hjrA 158 4.96e+01 1hjrA c.55.3.6 33727 2cveA 191 5.07e+01 1keaA 221 5.09e+01 a.96.1.2 68491 1vddA 228 5.28e+01 e.49.1.1 108519 1tqnA 486 5.37e+01 a.104.1.1 107238 2a8jA 420 5.37e+01 1a2pA 110 5.41e+01 1b20A d.1.1.2 36140 1vr5A 547 5.44e+01 1p2zA 968 5.44e+01 b.121.2.2,b.121.2.2 93962,93963 1wdcB 156 5.46e+01 1wdcB a.39.1.5 17302 1lmzA 187 5.58e+01 a.96.1.4 74037 1po5A 476 5.63e+01 a.104.1.1 94963 1csh 435 5.65e+01 1csh a.103.1.1 18880 1gmyA 261 5.76e+01 d.3.1.1 76236 1l1eA 287 5.83e+01 c.66.1.18 73454 1r1hA 696 5.90e+01 d.92.1.4 104756 1whzA 70 6.01e+01 1wzdA 215 6.02e+01 2ctoA 93 6.08e+01 1aop 497 6.14e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1vqoP 149 6.17e+01 2b5eA 504 6.22e+01 1fsgA 233 6.25e+01 1qk3A c.61.1.1 34029 1vyoA 128 6.28e+01 2lhb 149 6.41e+01 2fal a.1.1.2 15597 2bopA 85 6.46e+01 2bopA d.58.8.1 39217 2bibA 547 6.53e+01 1h6kZ 98 6.57e+01 d.58.7.1 60686 1gjwA 637 6.70e+01 b.71.1.1,c.1.8.1 60582,60583 2bj0A 203 6.81e+01 1k3iA 656 6.85e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1w2wB 191 6.89e+01 1jpaA 312 6.91e+01 d.144.1.7 67011 1iloA 77 6.96e+01 c.47.1.1 66205 2amxA 376 7.03e+01 1fdr 248 7.05e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1p6oA 161 7.07e+01 c.97.1.2 94185 1qysA 106 7.14e+01 k.41.1.1 96603 2fug5 207 7.16e+01 1o5kA 306 7.19e+01 c.1.10.1 92504 1ka8A 100 7.20e+01 a.4.5.20 72241 1tfe 145 7.25e+01 1tfe d.43.1.1 38680 2bl0C 142 7.33e+01 1fnd 314 7.38e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1ykhA 108 7.40e+01 1ek0A 170 7.70e+01 1ctqA c.37.1.8 32076 1tuzA 118 7.79e+01 1q1vA 70 7.97e+01 a.159.4.1 104479 1v8hA 107 8.13e+01 1ppjD 241 8.15e+01 a.3.1.3,f.23.11.1 104258,104259 1ta0A 197 8.18e+01 c.108.1.16 106729 1ykjA 394 8.25e+01 1kk8B 139 8.29e+01 a.39.1.5 77430 1vmjA 151 8.41e+01 1kb9D 246 8.49e+01 a.3.1.3,f.23.11.1 77317,77318 1f9yA 158 8.61e+01 d.58.30.1 83249 2bnuA 203 8.61e+01 2g76A 335 8.66e+01 1m07A 111 8.85e+01 d.5.1.1 78328