# List of top-scoring protein chains for T0316.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 6.52e-01 1ok0A 74 2.96e+00 b.5.1.1 93191 1iq4A 179 3.03e+00 1iq4A d.77.1.1 62641 1s1iH 191 3.73e+00 i.1.1.1 105182 1vdgA 197 4.36e+00 1mkeA 152 5.22e+00 b.55.1.4 79231 2a2pA 129 7.28e+00 1zczA 464 1.04e+01 1pmzA 86 1.08e+01 a.39.1.10 104195 1cqqA 180 1.19e+01 1cqqA b.47.1.4 26422 1ugnA 198 1.38e+01 b.1.1.4,b.1.1.4 107828,107829 1uteA 313 1.38e+01 1uteA d.159.1.1 42078 1rc9A 221 1.40e+01 1vhqA 232 1.43e+01 c.23.16.2 100696 1g0xA 197 1.49e+01 1nkr b.1.1.4,b.1.1.4 21805,21806 1mjiA 182 1.53e+01 d.77.1.1 79208 1bkf 107 1.58e+01 1fkj d.26.1.1 38382 1am2 199 1.59e+01 1am2 b.86.1.2 28381 1cjbA 231 1.60e+01 1qk3A c.61.1.1 34079 1vorG 178 1.66e+01 1sg0A 230 1.69e+01 1zx1A 231 1.70e+01 1eal 127 1.71e+01 1hmt b.60.1.2 27227 1nkwD 180 1.71e+01 i.1.1.2 80589 2bzsA 236 1.71e+01 1n4kA 381 1.76e+01 a.118.22.1,b.42.6.1 79992,79993 1fkj 107 1.78e+01 1fkj d.26.1.1 38384 1oy1A 228 1.78e+01 c.23.16.2 87548 1tcoC 107 1.79e+01 1fkj d.26.1.1 38426 1eymA 107 1.81e+01 1fkj d.26.1.1 38403 1bl4A 107 1.84e+01 1fkj d.26.1.1 38393 2aw4F 178 1.88e+01 1qk5A 233 1.99e+01 1qk3A c.61.1.1 34035 1fsgA 233 2.09e+01 1qk3A c.61.1.1 34029 1dbrA 231 2.13e+01 1qk3A c.61.1.1 34041 1po5A 476 2.15e+01 a.104.1.1 94963 1fkl 107 2.20e+01 1fkj d.26.1.1 38423 1hey 128 2.30e+01 3chy c.23.1.1 31061 2dg4A 107 2.37e+01 1gpmA 525 2.42e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1suoA 476 2.42e+01 a.104.1.1 106026 1uszA 149 2.45e+01 b.2.3.6 108011 1m94A 93 2.51e+01 d.15.1.1 78865 2dg9A 107 2.67e+01 1lbvA 252 2.81e+01 e.7.1.1 73813 1rxlA 156 3.00e+01 1kn1A 160 3.18e+01 a.1.1.3 77455 1hm7A 336 3.32e+01 a.128.1.4 76719 1ps1A 337 3.33e+01 1ps1A a.128.1.4 19450 1mc8A 343 3.70e+01 a.60.7.1,c.120.1.2 78945,78946 1zo0A 126 3.97e+01 1fo0A 116 4.00e+01 1tvdA b.1.1.1 20610 1b43A 340 4.11e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1iruE 241 4.13e+01 d.153.1.4 71356 1gof 639 4.15e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1t2xA 639 4.15e+01 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 1k3iA 656 4.16e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1gzsB 165 4.21e+01 a.168.1.1 76425 2gpyA 233 4.25e+01 1tif 78 4.36e+01 1tif d.15.8.1 37836 1yx2A 365 4.38e+01 1allA 160 4.39e+01 1qgwC a.1.1.3 15647 1ntyA 311 4.55e+01 a.87.1.1,b.55.1.1 103873,103874 1o9aA 93 4.87e+01 g.27.1.1,g.27.1.1 86686,86687 1ojt 482 5.56e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1bhy 482 5.56e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1qtfA 246 5.57e+01 1agjA b.47.1.1 25830 1yat 113 5.60e+01 1fkj d.26.1.1 38427 1gknA 128 5.63e+01 g.18.1.1,g.18.1.1 70229,70230 2b7aA 293 5.65e+01 1dt2A 245 5.71e+01 b.47.1.1 76138 1pzgA 331 5.93e+01 c.2.1.5,d.162.1.1 95425,95426 1xcbA 211 6.01e+01 a.4.5.38,c.2.1.12 109552,109553 1xwyA 264 6.08e+01 2aajA 130 6.08e+01 1dn0B 232 6.08e+01 1igtB b.1.1.1,b.1.1.2 19831,20935 1qlrB 232 6.22e+01 1igtB b.1.1.1,b.1.1.2 19835,20939 1chmA 401 6.50e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1qtnA 164 6.69e+01 1pauA c.17.1.1 30999 1tocR 120 6.82e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1eo9A 209 7.03e+01 3pchA b.3.6.1 22731 1vrpA 381 7.05e+01 1rrsA 369 7.11e+01 a.96.1.2,d.113.1.3 97800,97801 1rrqA 369 7.19e+01 a.96.1.2,d.113.1.3 97798,97799 1b33A 160 7.19e+01 1qgwC a.1.1.3 15649 1eoaA 209 7.20e+01 3pchA b.3.6.1 22732 1wltA 196 7.27e+01 1wu9A 80 7.69e+01 6cgt 684 7.76e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21837,22506,27744,28731 1yyvA 131 7.83e+01 1kbaA 66 8.13e+01 3ebx g.7.1.1 44431 1jwiB 125 8.20e+01 d.169.1.1 67384 2erjC 247 8.21e+01 1qr0A 228 8.23e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1g5cA 170 8.27e+01 1g5cA c.53.2.1 60264 5cgt 684 8.41e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21824,22493,27731,28718 1txqB 86 8.45e+01 1czeA 396 8.46e+01 1ajsA c.67.1.1 34301 1qdqA 253 8.46e+01 1theB d.3.1.1 37064 1yoo 396 8.59e+01 1ajsA c.67.1.1 34295 2ezwA 50 8.67e+01 1wpqA 349 8.71e+01 8cgtA 684 8.72e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21831,22500,27738,28725 1cgt 684 8.73e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 4cgt 678 8.77e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21825,22494,27732,28719 1zs8A 274 8.81e+01