/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0315.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0315.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0315/ -e s/START_COL/1/ \ -e s/REAL_PDB/2gzxA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175138988 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 4.6103 sec, elapsed time= 4.68225 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 4.67229 sec, elapsed time= 4.77523 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0315 numbered 1 through 257 Created new target T0315 from T0315.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2gzxA expands to /projects/compbio/data/pdb/2gzx.pdb.gz 2gzxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Read 253 residues and 2015 atoms. # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 6.601 sec, elapsed time= 6.75211 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 208 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -87.3518 # GDT_score(maxd=8,maxw=2.9)= -91.7286 # GDT_score(maxd=8,maxw=3.2)= -88.6345 # GDT_score(maxd=8,maxw=3.5)= -85.2019 # GDT_score(maxd=10,maxw=3.8)= -86.6892 # GDT_score(maxd=10,maxw=4)= -84.383 # GDT_score(maxd=10,maxw=4.2)= -81.9429 # GDT_score(maxd=12,maxw=4.3)= -84.9246 # GDT_score(maxd=12,maxw=4.5)= -82.5682 # GDT_score(maxd=12,maxw=4.7)= -80.1881 # GDT_score(maxd=14,maxw=5.2)= -77.8437 # GDT_score(maxd=14,maxw=5.5)= -74.4148 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 3.0270000e+03 rmsd (weighted)= 1.9340650e+00 (unweighted)= 1.1567906e+01 superimposing iter= 1 total_weight= 8.3610470e+03 rmsd (weighted)= 8.8458683e-01 (unweighted)= 1.1587978e+01 superimposing iter= 2 total_weight= 3.2825550e+03 rmsd (weighted)= 6.8442113e-01 (unweighted)= 1.1594268e+01 superimposing iter= 3 total_weight= 2.2732317e+03 rmsd (weighted)= 6.4019528e-01 (unweighted)= 1.1597561e+01 superimposing iter= 4 total_weight= 2.0903823e+03 rmsd (weighted)= 6.2540461e-01 (unweighted)= 1.1599417e+01 superimposing iter= 5 total_weight= 2.0401445e+03 rmsd (weighted)= 6.1871864e-01 (unweighted)= 1.1600475e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_173137380.pdb -s /var/tmp/to_scwrl_173137380.seq -o /var/tmp/from_scwrl_173137380.pdb > /var/tmp/scwrl_173137380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_173137380.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -86.4625 # GDT_score(maxd=8,maxw=2.9)= -90.8805 # GDT_score(maxd=8,maxw=3.2)= -87.6704 # GDT_score(maxd=8,maxw=3.5)= -84.2276 # GDT_score(maxd=10,maxw=3.8)= -85.8042 # GDT_score(maxd=10,maxw=4)= -83.4464 # GDT_score(maxd=10,maxw=4.2)= -81.0399 # GDT_score(maxd=12,maxw=4.3)= -84.0406 # GDT_score(maxd=12,maxw=4.5)= -81.7241 # GDT_score(maxd=12,maxw=4.7)= -79.3495 # GDT_score(maxd=14,maxw=5.2)= -77.0929 # GDT_score(maxd=14,maxw=5.5)= -73.7519 # command:# request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_364990442.pdb -s /var/tmp/to_scwrl_364990442.seq -o /var/tmp/from_scwrl_364990442.pdb > /var/tmp/scwrl_364990442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364990442.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -87.4506 # GDT_score(maxd=8,maxw=2.9)= -92.4131 # GDT_score(maxd=8,maxw=3.2)= -89.2139 # GDT_score(maxd=8,maxw=3.5)= -85.644 # GDT_score(maxd=10,maxw=3.8)= -87.1082 # GDT_score(maxd=10,maxw=4)= -84.7238 # GDT_score(maxd=10,maxw=4.2)= -82.3011 # GDT_score(maxd=12,maxw=4.3)= -85.2439 # GDT_score(maxd=12,maxw=4.5)= -82.9045 # GDT_score(maxd=12,maxw=4.7)= -80.5504 # GDT_score(maxd=14,maxw=5.2)= -78.2674 # GDT_score(maxd=14,maxw=5.5)= -74.8666 # command:# request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1361346971.pdb -s /var/tmp/to_scwrl_1361346971.seq -o /var/tmp/from_scwrl_1361346971.pdb > /var/tmp/scwrl_1361346971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1361346971.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.98419 # GDT_score = -88.2411 # GDT_score(maxd=8,maxw=2.9)= -92.0623 # GDT_score(maxd=8,maxw=3.2)= -89.5146 # GDT_score(maxd=8,maxw=3.5)= -86.4947 # GDT_score(maxd=10,maxw=3.8)= -87.7238 # GDT_score(maxd=10,maxw=4)= -85.5986 # GDT_score(maxd=10,maxw=4.2)= -83.3449 # GDT_score(maxd=12,maxw=4.3)= -85.9989 # GDT_score(maxd=12,maxw=4.5)= -83.8241 # GDT_score(maxd=12,maxw=4.7)= -81.6048 # GDT_score(maxd=14,maxw=5.2)= -79.2219 # GDT_score(maxd=14,maxw=5.5)= -75.8035 # command:# request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_410691423.pdb -s /var/tmp/to_scwrl_410691423.seq -o /var/tmp/from_scwrl_410691423.pdb > /var/tmp/scwrl_410691423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410691423.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.956522 # GDT_score = -83.5968 # GDT_score(maxd=8,maxw=2.9)= -86.6646 # GDT_score(maxd=8,maxw=3.2)= -84.2019 # GDT_score(maxd=8,maxw=3.5)= -81.2951 # GDT_score(maxd=10,maxw=3.8)= -82.7141 # GDT_score(maxd=10,maxw=4)= -80.715 # GDT_score(maxd=10,maxw=4.2)= -78.6669 # GDT_score(maxd=12,maxw=4.3)= -81.2718 # GDT_score(maxd=12,maxw=4.5)= -79.3027 # GDT_score(maxd=12,maxw=4.7)= -77.3328 # GDT_score(maxd=14,maxw=5.2)= -75.4312 # GDT_score(maxd=14,maxw=5.5)= -72.4254 # command:# request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1733360945.pdb -s /var/tmp/to_scwrl_1733360945.seq -o /var/tmp/from_scwrl_1733360945.pdb > /var/tmp/scwrl_1733360945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1733360945.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0315.try1-opt2.pdb looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -87.5494 # GDT_score(maxd=8,maxw=2.9)= -92.4244 # GDT_score(maxd=8,maxw=3.2)= -89.2179 # GDT_score(maxd=8,maxw=3.5)= -85.6439 # GDT_score(maxd=10,maxw=3.8)= -87.1075 # GDT_score(maxd=10,maxw=4)= -84.723 # GDT_score(maxd=10,maxw=4.2)= -82.3031 # GDT_score(maxd=12,maxw=4.3)= -85.2432 # GDT_score(maxd=12,maxw=4.5)= -82.906 # GDT_score(maxd=12,maxw=4.7)= -80.5501 # GDT_score(maxd=14,maxw=5.2)= -78.2763 # GDT_score(maxd=14,maxw=5.5)= -74.8786 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 3.0270000e+03 rmsd (weighted)= 1.9628212e+00 (unweighted)= 1.1745932e+01 superimposing iter= 1 total_weight= 8.2443503e+03 rmsd (weighted)= 9.1885984e-01 (unweighted)= 1.1764914e+01 superimposing iter= 2 total_weight= 2.9573730e+03 rmsd (weighted)= 7.5383636e-01 (unweighted)= 1.1770183e+01 superimposing iter= 3 total_weight= 2.1500767e+03 rmsd (weighted)= 7.2830703e-01 (unweighted)= 1.1772477e+01 superimposing iter= 4 total_weight= 2.0543168e+03 rmsd (weighted)= 7.2034467e-01 (unweighted)= 1.1773691e+01 superimposing iter= 5 total_weight= 2.0349417e+03 rmsd (weighted)= 7.1595004e-01 (unweighted)= 1.1774415e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0315.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0315)I164.C and (T0315)V165.C only 0.0000000e+00 apart, marking (T0315)V165.C as missing WARNING: atoms too close: (T0315)V165.N and (T0315)T166.N only 0.0000000e+00 apart, marking (T0315)V165.N as missing WARNING: atoms too close: (T0315)V165.CA and (T0315)T166.CA only 0.0000000e+00 apart, marking (T0315)V165.CA as missing # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.992095 # GDT_score = -88.7352 # GDT_score(maxd=8,maxw=2.9)= -92.6494 # GDT_score(maxd=8,maxw=3.2)= -90.1136 # GDT_score(maxd=8,maxw=3.5)= -87.086 # GDT_score(maxd=10,maxw=3.8)= -88.3315 # GDT_score(maxd=10,maxw=4)= -86.1923 # GDT_score(maxd=10,maxw=4.2)= -83.91 # GDT_score(maxd=12,maxw=4.3)= -86.5992 # GDT_score(maxd=12,maxw=4.5)= -84.4001 # GDT_score(maxd=12,maxw=4.7)= -82.151 # GDT_score(maxd=14,maxw=5.2)= -79.7434 # GDT_score(maxd=14,maxw=5.5)= -76.2814 # command:# ReadConformPDB reading from PDB file T0315.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0315)E72.C and (T0315)H74.C only 0.0000000e+00 apart, marking (T0315)H74.C as missing WARNING: atoms too close: (T0315)E73.N and (T0315)L75.N only 0.0000000e+00 apart, marking (T0315)E73.N as missing WARNING: atoms too close: (T0315)E73.CA and (T0315)L75.CA only 0.0000000e+00 apart, marking (T0315)E73.CA as missing WARNING: atoms too close: (T0315)I164.C and (T0315)V165.C only 0.0000000e+00 apart, marking (T0315)V165.C as missing WARNING: atoms too close: (T0315)V165.N and (T0315)T166.N only 0.0000000e+00 apart, marking (T0315)V165.N as missing WARNING: atoms too close: (T0315)V165.CA and (T0315)T166.CA only 0.0000000e+00 apart, marking (T0315)V165.CA as missing # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.956522 # GDT_score = -83.5968 # GDT_score(maxd=8,maxw=2.9)= -86.6644 # GDT_score(maxd=8,maxw=3.2)= -84.1989 # GDT_score(maxd=8,maxw=3.5)= -81.2902 # GDT_score(maxd=10,maxw=3.8)= -82.7096 # GDT_score(maxd=10,maxw=4)= -80.7087 # GDT_score(maxd=10,maxw=4.2)= -78.6584 # GDT_score(maxd=12,maxw=4.3)= -81.2666 # GDT_score(maxd=12,maxw=4.5)= -79.2957 # GDT_score(maxd=12,maxw=4.7)= -77.3258 # GDT_score(maxd=14,maxw=5.2)= -75.425 # GDT_score(maxd=14,maxw=5.5)= -72.4188 # command:# ReadConformPDB reading from PDB file T0315.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0315)I164.C and (T0315)V165.C only 0.0000000e+00 apart, marking (T0315)V165.C as missing WARNING: atoms too close: (T0315)V165.N and (T0315)T166.N only 0.0000000e+00 apart, marking (T0315)V165.N as missing WARNING: atoms too close: (T0315)V165.CA and (T0315)T166.CA only 0.0000000e+00 apart, marking (T0315)V165.CA as missing # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0315.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0315)E146.C and (T0315)E147.C only 0.0000000e+00 apart, marking (T0315)E147.C as missing WARNING: atoms too close: (T0315)E147.N and (T0315)V148.N only 0.0000000e+00 apart, marking (T0315)E147.N as missing WARNING: atoms too close: (T0315)E147.CA and (T0315)V148.CA only 0.0000000e+00 apart, marking (T0315)E147.CA as missing WARNING: atoms too close: (T0315)I164.C and (T0315)V165.C only 0.0000000e+00 apart, marking (T0315)V165.C as missing WARNING: atoms too close: (T0315)V165.N and (T0315)T166.N only 0.0000000e+00 apart, marking (T0315)V165.N as missing WARNING: atoms too close: (T0315)V165.CA and (T0315)T166.CA only 0.0000000e+00 apart, marking (T0315)V165.CA as missing # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0315.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0315)L95.C and (T0315)H98.C only 0.0000000e+00 apart, marking (T0315)H98.C as missing WARNING: atoms too close: (T0315)D96.N and (T0315)W99.N only 0.0000000e+00 apart, marking (T0315)D96.N as missing WARNING: atoms too close: (T0315)D96.CA and (T0315)W99.CA only 0.0000000e+00 apart, marking (T0315)D96.CA as missing WARNING: atoms too close: (T0315)N167.C and (T0315)K168.C only 0.0000000e+00 apart, marking (T0315)K168.C as missing WARNING: atoms too close: (T0315)K168.N and (T0315)L169.N only 0.0000000e+00 apart, marking (T0315)K168.N as missing WARNING: atoms too close: (T0315)K168.CA and (T0315)L169.CA only 0.0000000e+00 apart, marking (T0315)K168.CA as missing WARNING: atoms too close: (T0315)E232.C and (T0315)L233.C only 0.0000000e+00 apart, marking (T0315)L233.C as missing WARNING: atoms too close: (T0315)L233.N and (T0315)K234.N only 0.0000000e+00 apart, marking (T0315)L233.N as missing WARNING: atoms too close: (T0315)L233.CA and (T0315)K234.CA only 0.0000000e+00 apart, marking (T0315)L233.CA as missing # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0315.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try2-opt2.gromacs0.pdb.gz looking for model 1 Error: Reading chain from PDB file T0315.try2-opt2.gromacs0.pdb.gz failed. # ReadConformPDB reading from PDB file T0315.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0315.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_552137922.pdb -s /var/tmp/to_scwrl_552137922.seq -o /var/tmp/from_scwrl_552137922.pdb > /var/tmp/scwrl_552137922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552137922.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2036819841.pdb -s /var/tmp/to_scwrl_2036819841.seq -o /var/tmp/from_scwrl_2036819841.pdb > /var/tmp/scwrl_2036819841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036819841.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1512171984.pdb -s /var/tmp/to_scwrl_1512171984.seq -o /var/tmp/from_scwrl_1512171984.pdb > /var/tmp/scwrl_1512171984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1512171984.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1878548244.pdb -s /var/tmp/to_scwrl_1878548244.seq -o /var/tmp/from_scwrl_1878548244.pdb > /var/tmp/scwrl_1878548244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1878548244.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2000111211.pdb -s /var/tmp/to_scwrl_2000111211.seq -o /var/tmp/from_scwrl_2000111211.pdb > /var/tmp/scwrl_2000111211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2000111211.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1398889768.pdb -s /var/tmp/to_scwrl_1398889768.seq -o /var/tmp/from_scwrl_1398889768.pdb > /var/tmp/scwrl_1398889768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1398889768.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1543992093.pdb -s /var/tmp/to_scwrl_1543992093.seq -o /var/tmp/from_scwrl_1543992093.pdb > /var/tmp/scwrl_1543992093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543992093.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1899414391.pdb -s /var/tmp/to_scwrl_1899414391.seq -o /var/tmp/from_scwrl_1899414391.pdb > /var/tmp/scwrl_1899414391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899414391.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1329070565.pdb -s /var/tmp/to_scwrl_1329070565.seq -o /var/tmp/from_scwrl_1329070565.pdb > /var/tmp/scwrl_1329070565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329070565.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_395549590.pdb -s /var/tmp/to_scwrl_395549590.seq -o /var/tmp/from_scwrl_395549590.pdb > /var/tmp/scwrl_395549590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_395549590.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1751662676.pdb -s /var/tmp/to_scwrl_1751662676.seq -o /var/tmp/from_scwrl_1751662676.pdb > /var/tmp/scwrl_1751662676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1751662676.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1111360754.pdb -s /var/tmp/to_scwrl_1111360754.seq -o /var/tmp/from_scwrl_1111360754.pdb > /var/tmp/scwrl_1111360754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111360754.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1305862510.pdb -s /var/tmp/to_scwrl_1305862510.seq -o /var/tmp/from_scwrl_1305862510.pdb > /var/tmp/scwrl_1305862510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1305862510.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2116174880.pdb -s /var/tmp/to_scwrl_2116174880.seq -o /var/tmp/from_scwrl_2116174880.pdb > /var/tmp/scwrl_2116174880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2116174880.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_814545215.pdb -s /var/tmp/to_scwrl_814545215.seq -o /var/tmp/from_scwrl_814545215.pdb > /var/tmp/scwrl_814545215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_814545215.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_867021825.pdb -s /var/tmp/to_scwrl_867021825.seq -o /var/tmp/from_scwrl_867021825.pdb > /var/tmp/scwrl_867021825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_867021825.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_821190491.pdb -s /var/tmp/to_scwrl_821190491.seq -o /var/tmp/from_scwrl_821190491.pdb > /var/tmp/scwrl_821190491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821190491.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1873138240.pdb -s /var/tmp/to_scwrl_1873138240.seq -o /var/tmp/from_scwrl_1873138240.pdb > /var/tmp/scwrl_1873138240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1873138240.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_717972637.pdb -s /var/tmp/to_scwrl_717972637.seq -o /var/tmp/from_scwrl_717972637.pdb > /var/tmp/scwrl_717972637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_717972637.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1177937887.pdb -s /var/tmp/to_scwrl_1177937887.seq -o /var/tmp/from_scwrl_1177937887.pdb > /var/tmp/scwrl_1177937887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1177937887.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2060177529.pdb -s /var/tmp/to_scwrl_2060177529.seq -o /var/tmp/from_scwrl_2060177529.pdb > /var/tmp/scwrl_2060177529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060177529.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_247969520.pdb -s /var/tmp/to_scwrl_247969520.seq -o /var/tmp/from_scwrl_247969520.pdb > /var/tmp/scwrl_247969520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_247969520.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_152999102.pdb -s /var/tmp/to_scwrl_152999102.seq -o /var/tmp/from_scwrl_152999102.pdb > /var/tmp/scwrl_152999102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152999102.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_570839785.pdb -s /var/tmp/to_scwrl_570839785.seq -o /var/tmp/from_scwrl_570839785.pdb > /var/tmp/scwrl_570839785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_570839785.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1931399070.pdb -s /var/tmp/to_scwrl_1931399070.seq -o /var/tmp/from_scwrl_1931399070.pdb > /var/tmp/scwrl_1931399070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931399070.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1978875803.pdb -s /var/tmp/to_scwrl_1978875803.seq -o /var/tmp/from_scwrl_1978875803.pdb > /var/tmp/scwrl_1978875803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1978875803.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_743977165.pdb -s /var/tmp/to_scwrl_743977165.seq -o /var/tmp/from_scwrl_743977165.pdb > /var/tmp/scwrl_743977165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_743977165.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_148905865.pdb -s /var/tmp/to_scwrl_148905865.seq -o /var/tmp/from_scwrl_148905865.pdb > /var/tmp/scwrl_148905865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_148905865.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1192739127.pdb -s /var/tmp/to_scwrl_1192739127.seq -o /var/tmp/from_scwrl_1192739127.pdb > /var/tmp/scwrl_1192739127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192739127.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1154668587.pdb -s /var/tmp/to_scwrl_1154668587.seq -o /var/tmp/from_scwrl_1154668587.pdb > /var/tmp/scwrl_1154668587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1154668587.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1882266811.pdb -s /var/tmp/to_scwrl_1882266811.seq -o /var/tmp/from_scwrl_1882266811.pdb > /var/tmp/scwrl_1882266811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882266811.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1744877049.pdb -s /var/tmp/to_scwrl_1744877049.seq -o /var/tmp/from_scwrl_1744877049.pdb > /var/tmp/scwrl_1744877049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744877049.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1044004782.pdb -s /var/tmp/to_scwrl_1044004782.seq -o /var/tmp/from_scwrl_1044004782.pdb > /var/tmp/scwrl_1044004782.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1044004782.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1246955148.pdb -s /var/tmp/to_scwrl_1246955148.seq -o /var/tmp/from_scwrl_1246955148.pdb > /var/tmp/scwrl_1246955148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246955148.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1475941646.pdb -s /var/tmp/to_scwrl_1475941646.seq -o /var/tmp/from_scwrl_1475941646.pdb > /var/tmp/scwrl_1475941646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475941646.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_896632346.pdb -s /var/tmp/to_scwrl_896632346.seq -o /var/tmp/from_scwrl_896632346.pdb > /var/tmp/scwrl_896632346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_896632346.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_498361271.pdb -s /var/tmp/to_scwrl_498361271.seq -o /var/tmp/from_scwrl_498361271.pdb > /var/tmp/scwrl_498361271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498361271.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_872450094.pdb -s /var/tmp/to_scwrl_872450094.seq -o /var/tmp/from_scwrl_872450094.pdb > /var/tmp/scwrl_872450094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_872450094.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_648563090.pdb -s /var/tmp/to_scwrl_648563090.seq -o /var/tmp/from_scwrl_648563090.pdb > /var/tmp/scwrl_648563090.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_648563090.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1827431836.pdb -s /var/tmp/to_scwrl_1827431836.seq -o /var/tmp/from_scwrl_1827431836.pdb > /var/tmp/scwrl_1827431836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1827431836.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1267999683.pdb -s /var/tmp/to_scwrl_1267999683.seq -o /var/tmp/from_scwrl_1267999683.pdb > /var/tmp/scwrl_1267999683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1267999683.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_252742120.pdb -s /var/tmp/to_scwrl_252742120.seq -o /var/tmp/from_scwrl_252742120.pdb > /var/tmp/scwrl_252742120.log Error: Couldn't open file /var/tmp/from_scwrl_252742120.pdb or /var/tmp/from_scwrl_252742120.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_252742120_b.pdb or decoys//var/tmp/from_scwrl_252742120_b.pdb.gz for input Trying /var/tmp/from_scwrl_252742120_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_252742120_b.pdb or /var/tmp/from_scwrl_252742120_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_252742120_a.pdb or decoys//var/tmp/from_scwrl_252742120_a.pdb.gz for input Trying /var/tmp/from_scwrl_252742120_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_252742120_a.pdb or /var/tmp/from_scwrl_252742120_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_252742120.pdb or /var/tmp/from_scwrl_252742120_b.pdb or /var/tmp/from_scwrl_252742120_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_791308944.pdb -s /var/tmp/to_scwrl_791308944.seq -o /var/tmp/from_scwrl_791308944.pdb > /var/tmp/scwrl_791308944.log Error: Couldn't open file /var/tmp/from_scwrl_791308944.pdb or /var/tmp/from_scwrl_791308944.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_791308944_b.pdb or decoys//var/tmp/from_scwrl_791308944_b.pdb.gz for input Trying /var/tmp/from_scwrl_791308944_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_791308944_b.pdb or /var/tmp/from_scwrl_791308944_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_791308944_a.pdb or decoys//var/tmp/from_scwrl_791308944_a.pdb.gz for input Trying /var/tmp/from_scwrl_791308944_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_791308944_a.pdb or /var/tmp/from_scwrl_791308944_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_791308944.pdb or /var/tmp/from_scwrl_791308944_b.pdb or /var/tmp/from_scwrl_791308944_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_426378547.pdb -s /var/tmp/to_scwrl_426378547.seq -o /var/tmp/from_scwrl_426378547.pdb > /var/tmp/scwrl_426378547.log Error: Couldn't open file /var/tmp/from_scwrl_426378547.pdb or /var/tmp/from_scwrl_426378547.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_426378547_b.pdb or decoys//var/tmp/from_scwrl_426378547_b.pdb.gz for input Trying /var/tmp/from_scwrl_426378547_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_426378547_b.pdb or /var/tmp/from_scwrl_426378547_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_426378547_a.pdb or decoys//var/tmp/from_scwrl_426378547_a.pdb.gz for input Trying /var/tmp/from_scwrl_426378547_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_426378547_a.pdb or /var/tmp/from_scwrl_426378547_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_426378547.pdb or /var/tmp/from_scwrl_426378547_b.pdb or /var/tmp/from_scwrl_426378547_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_221433353.pdb -s /var/tmp/to_scwrl_221433353.seq -o /var/tmp/from_scwrl_221433353.pdb > /var/tmp/scwrl_221433353.log Error: Couldn't open file /var/tmp/from_scwrl_221433353.pdb or /var/tmp/from_scwrl_221433353.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_221433353_b.pdb or decoys//var/tmp/from_scwrl_221433353_b.pdb.gz for input Trying /var/tmp/from_scwrl_221433353_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_221433353_b.pdb or /var/tmp/from_scwrl_221433353_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_221433353_a.pdb or decoys//var/tmp/from_scwrl_221433353_a.pdb.gz for input Trying /var/tmp/from_scwrl_221433353_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_221433353_a.pdb or /var/tmp/from_scwrl_221433353_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_221433353.pdb or /var/tmp/from_scwrl_221433353_b.pdb or /var/tmp/from_scwrl_221433353_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1605854158.pdb -s /var/tmp/to_scwrl_1605854158.seq -o /var/tmp/from_scwrl_1605854158.pdb > /var/tmp/scwrl_1605854158.log Error: Couldn't open file /var/tmp/from_scwrl_1605854158.pdb or /var/tmp/from_scwrl_1605854158.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1605854158_b.pdb or decoys//var/tmp/from_scwrl_1605854158_b.pdb.gz for input Trying /var/tmp/from_scwrl_1605854158_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1605854158_b.pdb or /var/tmp/from_scwrl_1605854158_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1605854158_a.pdb or decoys//var/tmp/from_scwrl_1605854158_a.pdb.gz for input Trying /var/tmp/from_scwrl_1605854158_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1605854158_a.pdb or /var/tmp/from_scwrl_1605854158_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1605854158.pdb or /var/tmp/from_scwrl_1605854158_b.pdb or /var/tmp/from_scwrl_1605854158_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1293400372.pdb -s /var/tmp/to_scwrl_1293400372.seq -o /var/tmp/from_scwrl_1293400372.pdb > /var/tmp/scwrl_1293400372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1293400372.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1042623844.pdb -s /var/tmp/to_scwrl_1042623844.seq -o /var/tmp/from_scwrl_1042623844.pdb > /var/tmp/scwrl_1042623844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1042623844.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1331508751.pdb -s /var/tmp/to_scwrl_1331508751.seq -o /var/tmp/from_scwrl_1331508751.pdb > /var/tmp/scwrl_1331508751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331508751.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2011373009.pdb -s /var/tmp/to_scwrl_2011373009.seq -o /var/tmp/from_scwrl_2011373009.pdb > /var/tmp/scwrl_2011373009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2011373009.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_73078084.pdb -s /var/tmp/to_scwrl_73078084.seq -o /var/tmp/from_scwrl_73078084.pdb > /var/tmp/scwrl_73078084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_73078084.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1244202634.pdb -s /var/tmp/to_scwrl_1244202634.seq -o /var/tmp/from_scwrl_1244202634.pdb > /var/tmp/scwrl_1244202634.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1244202634.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_111858882.pdb -s /var/tmp/to_scwrl_111858882.seq -o /var/tmp/from_scwrl_111858882.pdb > /var/tmp/scwrl_111858882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_111858882.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_226077187.pdb -s /var/tmp/to_scwrl_226077187.seq -o /var/tmp/from_scwrl_226077187.pdb > /var/tmp/scwrl_226077187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_226077187.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1815042419.pdb -s /var/tmp/to_scwrl_1815042419.seq -o /var/tmp/from_scwrl_1815042419.pdb > /var/tmp/scwrl_1815042419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1815042419.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2043257952.pdb -s /var/tmp/to_scwrl_2043257952.seq -o /var/tmp/from_scwrl_2043257952.pdb > /var/tmp/scwrl_2043257952.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2043257952.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_57469343.pdb -s /var/tmp/to_scwrl_57469343.seq -o /var/tmp/from_scwrl_57469343.pdb > /var/tmp/scwrl_57469343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_57469343.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_411535938.pdb -s /var/tmp/to_scwrl_411535938.seq -o /var/tmp/from_scwrl_411535938.pdb > /var/tmp/scwrl_411535938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411535938.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_44680170.pdb -s /var/tmp/to_scwrl_44680170.seq -o /var/tmp/from_scwrl_44680170.pdb > /var/tmp/scwrl_44680170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_44680170.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1250208470.pdb -s /var/tmp/to_scwrl_1250208470.seq -o /var/tmp/from_scwrl_1250208470.pdb > /var/tmp/scwrl_1250208470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1250208470.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1566204525.pdb -s /var/tmp/to_scwrl_1566204525.seq -o /var/tmp/from_scwrl_1566204525.pdb > /var/tmp/scwrl_1566204525.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566204525.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1926946981.pdb -s /var/tmp/to_scwrl_1926946981.seq -o /var/tmp/from_scwrl_1926946981.pdb > /var/tmp/scwrl_1926946981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1926946981.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_847601874.pdb -s /var/tmp/to_scwrl_847601874.seq -o /var/tmp/from_scwrl_847601874.pdb > /var/tmp/scwrl_847601874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847601874.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_462725661.pdb -s /var/tmp/to_scwrl_462725661.seq -o /var/tmp/from_scwrl_462725661.pdb > /var/tmp/scwrl_462725661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_462725661.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1026418484.pdb -s /var/tmp/to_scwrl_1026418484.seq -o /var/tmp/from_scwrl_1026418484.pdb > /var/tmp/scwrl_1026418484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1026418484.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_176059873.pdb -s /var/tmp/to_scwrl_176059873.seq -o /var/tmp/from_scwrl_176059873.pdb > /var/tmp/scwrl_176059873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_176059873.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1359358006.pdb -s /var/tmp/to_scwrl_1359358006.seq -o /var/tmp/from_scwrl_1359358006.pdb > /var/tmp/scwrl_1359358006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1359358006.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1524779754.pdb -s /var/tmp/to_scwrl_1524779754.seq -o /var/tmp/from_scwrl_1524779754.pdb > /var/tmp/scwrl_1524779754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1524779754.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1048509967.pdb -s /var/tmp/to_scwrl_1048509967.seq -o /var/tmp/from_scwrl_1048509967.pdb > /var/tmp/scwrl_1048509967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1048509967.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2007921097.pdb -s /var/tmp/to_scwrl_2007921097.seq -o /var/tmp/from_scwrl_2007921097.pdb > /var/tmp/scwrl_2007921097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2007921097.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1204727943.pdb -s /var/tmp/to_scwrl_1204727943.seq -o /var/tmp/from_scwrl_1204727943.pdb > /var/tmp/scwrl_1204727943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1204727943.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_169026003.pdb -s /var/tmp/to_scwrl_169026003.seq -o /var/tmp/from_scwrl_169026003.pdb > /var/tmp/scwrl_169026003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169026003.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_113179570.pdb -s /var/tmp/to_scwrl_113179570.seq -o /var/tmp/from_scwrl_113179570.pdb > /var/tmp/scwrl_113179570.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_113179570.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1996036888.pdb -s /var/tmp/to_scwrl_1996036888.seq -o /var/tmp/from_scwrl_1996036888.pdb > /var/tmp/scwrl_1996036888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1996036888.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_595404551.pdb -s /var/tmp/to_scwrl_595404551.seq -o /var/tmp/from_scwrl_595404551.pdb > /var/tmp/scwrl_595404551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_595404551.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_334612923.pdb -s /var/tmp/to_scwrl_334612923.seq -o /var/tmp/from_scwrl_334612923.pdb > /var/tmp/scwrl_334612923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334612923.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1454407399.pdb -s /var/tmp/to_scwrl_1454407399.seq -o /var/tmp/from_scwrl_1454407399.pdb > /var/tmp/scwrl_1454407399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1454407399.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1888804923.pdb -s /var/tmp/to_scwrl_1888804923.seq -o /var/tmp/from_scwrl_1888804923.pdb > /var/tmp/scwrl_1888804923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888804923.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1377236766.pdb -s /var/tmp/to_scwrl_1377236766.seq -o /var/tmp/from_scwrl_1377236766.pdb > /var/tmp/scwrl_1377236766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377236766.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_638432505.pdb -s /var/tmp/to_scwrl_638432505.seq -o /var/tmp/from_scwrl_638432505.pdb > /var/tmp/scwrl_638432505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_638432505.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1752694285.pdb -s /var/tmp/to_scwrl_1752694285.seq -o /var/tmp/from_scwrl_1752694285.pdb > /var/tmp/scwrl_1752694285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1752694285.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1450314850.pdb -s /var/tmp/to_scwrl_1450314850.seq -o /var/tmp/from_scwrl_1450314850.pdb > /var/tmp/scwrl_1450314850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1450314850.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1882635139.pdb -s /var/tmp/to_scwrl_1882635139.seq -o /var/tmp/from_scwrl_1882635139.pdb > /var/tmp/scwrl_1882635139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882635139.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1864553167.pdb -s /var/tmp/to_scwrl_1864553167.seq -o /var/tmp/from_scwrl_1864553167.pdb > /var/tmp/scwrl_1864553167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864553167.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1676392037.pdb -s /var/tmp/to_scwrl_1676392037.seq -o /var/tmp/from_scwrl_1676392037.pdb > /var/tmp/scwrl_1676392037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1676392037.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1550193911.pdb -s /var/tmp/to_scwrl_1550193911.seq -o /var/tmp/from_scwrl_1550193911.pdb > /var/tmp/scwrl_1550193911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550193911.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1760327472.pdb -s /var/tmp/to_scwrl_1760327472.seq -o /var/tmp/from_scwrl_1760327472.pdb > /var/tmp/scwrl_1760327472.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1760327472.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1733861380.pdb -s /var/tmp/to_scwrl_1733861380.seq -o /var/tmp/from_scwrl_1733861380.pdb > /var/tmp/scwrl_1733861380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1733861380.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1961729849.pdb -s /var/tmp/to_scwrl_1961729849.seq -o /var/tmp/from_scwrl_1961729849.pdb > /var/tmp/scwrl_1961729849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1961729849.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1805007642.pdb -s /var/tmp/to_scwrl_1805007642.seq -o /var/tmp/from_scwrl_1805007642.pdb > /var/tmp/scwrl_1805007642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1805007642.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_836586205.pdb -s /var/tmp/to_scwrl_836586205.seq -o /var/tmp/from_scwrl_836586205.pdb > /var/tmp/scwrl_836586205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_836586205.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1380450728.pdb -s /var/tmp/to_scwrl_1380450728.seq -o /var/tmp/from_scwrl_1380450728.pdb > /var/tmp/scwrl_1380450728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380450728.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1584470977.pdb -s /var/tmp/to_scwrl_1584470977.seq -o /var/tmp/from_scwrl_1584470977.pdb > /var/tmp/scwrl_1584470977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1584470977.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1684188078.pdb -s /var/tmp/to_scwrl_1684188078.seq -o /var/tmp/from_scwrl_1684188078.pdb > /var/tmp/scwrl_1684188078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1684188078.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1843176389.pdb -s /var/tmp/to_scwrl_1843176389.seq -o /var/tmp/from_scwrl_1843176389.pdb > /var/tmp/scwrl_1843176389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1843176389.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_463405814.pdb -s /var/tmp/to_scwrl_463405814.seq -o /var/tmp/from_scwrl_463405814.pdb > /var/tmp/scwrl_463405814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463405814.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1860247951.pdb -s /var/tmp/to_scwrl_1860247951.seq -o /var/tmp/from_scwrl_1860247951.pdb > /var/tmp/scwrl_1860247951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860247951.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1055050749.pdb -s /var/tmp/to_scwrl_1055050749.seq -o /var/tmp/from_scwrl_1055050749.pdb > /var/tmp/scwrl_1055050749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1055050749.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1988185568.pdb -s /var/tmp/to_scwrl_1988185568.seq -o /var/tmp/from_scwrl_1988185568.pdb > /var/tmp/scwrl_1988185568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1988185568.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_761274272.pdb -s /var/tmp/to_scwrl_761274272.seq -o /var/tmp/from_scwrl_761274272.pdb > /var/tmp/scwrl_761274272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_761274272.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_915488199.pdb -s /var/tmp/to_scwrl_915488199.seq -o /var/tmp/from_scwrl_915488199.pdb > /var/tmp/scwrl_915488199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_915488199.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1045429865.pdb -s /var/tmp/to_scwrl_1045429865.seq -o /var/tmp/from_scwrl_1045429865.pdb > /var/tmp/scwrl_1045429865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1045429865.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_930300275.pdb -s /var/tmp/to_scwrl_930300275.seq -o /var/tmp/from_scwrl_930300275.pdb > /var/tmp/scwrl_930300275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_930300275.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1028667769.pdb -s /var/tmp/to_scwrl_1028667769.seq -o /var/tmp/from_scwrl_1028667769.pdb > /var/tmp/scwrl_1028667769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1028667769.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_893983106.pdb -s /var/tmp/to_scwrl_893983106.seq -o /var/tmp/from_scwrl_893983106.pdb > /var/tmp/scwrl_893983106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_893983106.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1525704825.pdb -s /var/tmp/to_scwrl_1525704825.seq -o /var/tmp/from_scwrl_1525704825.pdb > /var/tmp/scwrl_1525704825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1525704825.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1363280691.pdb -s /var/tmp/to_scwrl_1363280691.seq -o /var/tmp/from_scwrl_1363280691.pdb > /var/tmp/scwrl_1363280691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1363280691.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_200906859.pdb -s /var/tmp/to_scwrl_200906859.seq -o /var/tmp/from_scwrl_200906859.pdb > /var/tmp/scwrl_200906859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_200906859.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1267026101.pdb -s /var/tmp/to_scwrl_1267026101.seq -o /var/tmp/from_scwrl_1267026101.pdb > /var/tmp/scwrl_1267026101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1267026101.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_593033811.pdb -s /var/tmp/to_scwrl_593033811.seq -o /var/tmp/from_scwrl_593033811.pdb > /var/tmp/scwrl_593033811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593033811.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_839339364.pdb -s /var/tmp/to_scwrl_839339364.seq -o /var/tmp/from_scwrl_839339364.pdb > /var/tmp/scwrl_839339364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_839339364.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_872236740.pdb -s /var/tmp/to_scwrl_872236740.seq -o /var/tmp/from_scwrl_872236740.pdb > /var/tmp/scwrl_872236740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_872236740.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2043348662.pdb -s /var/tmp/to_scwrl_2043348662.seq -o /var/tmp/from_scwrl_2043348662.pdb > /var/tmp/scwrl_2043348662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2043348662.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_574490856.pdb -s /var/tmp/to_scwrl_574490856.seq -o /var/tmp/from_scwrl_574490856.pdb > /var/tmp/scwrl_574490856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_574490856.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_589306260.pdb -s /var/tmp/to_scwrl_589306260.seq -o /var/tmp/from_scwrl_589306260.pdb > /var/tmp/scwrl_589306260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_589306260.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1572257052.pdb -s /var/tmp/to_scwrl_1572257052.seq -o /var/tmp/from_scwrl_1572257052.pdb > /var/tmp/scwrl_1572257052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1572257052.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2124684767.pdb -s /var/tmp/to_scwrl_2124684767.seq -o /var/tmp/from_scwrl_2124684767.pdb > /var/tmp/scwrl_2124684767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124684767.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_202150085.pdb -s /var/tmp/to_scwrl_202150085.seq -o /var/tmp/from_scwrl_202150085.pdb > /var/tmp/scwrl_202150085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202150085.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1158634786.pdb -s /var/tmp/to_scwrl_1158634786.seq -o /var/tmp/from_scwrl_1158634786.pdb > /var/tmp/scwrl_1158634786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1158634786.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1938930970.pdb -s /var/tmp/to_scwrl_1938930970.seq -o /var/tmp/from_scwrl_1938930970.pdb > /var/tmp/scwrl_1938930970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938930970.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2007157728.pdb -s /var/tmp/to_scwrl_2007157728.seq -o /var/tmp/from_scwrl_2007157728.pdb > /var/tmp/scwrl_2007157728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2007157728.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1995220991.pdb -s /var/tmp/to_scwrl_1995220991.seq -o /var/tmp/from_scwrl_1995220991.pdb > /var/tmp/scwrl_1995220991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1995220991.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1171898051.pdb -s /var/tmp/to_scwrl_1171898051.seq -o /var/tmp/from_scwrl_1171898051.pdb > /var/tmp/scwrl_1171898051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1171898051.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1444145058.pdb -s /var/tmp/to_scwrl_1444145058.seq -o /var/tmp/from_scwrl_1444145058.pdb > /var/tmp/scwrl_1444145058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1444145058.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1531925422.pdb -s /var/tmp/to_scwrl_1531925422.seq -o /var/tmp/from_scwrl_1531925422.pdb > /var/tmp/scwrl_1531925422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1531925422.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_867590794.pdb -s /var/tmp/to_scwrl_867590794.seq -o /var/tmp/from_scwrl_867590794.pdb > /var/tmp/scwrl_867590794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_867590794.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1907550872.pdb -s /var/tmp/to_scwrl_1907550872.seq -o /var/tmp/from_scwrl_1907550872.pdb > /var/tmp/scwrl_1907550872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1907550872.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1244689726.pdb -s /var/tmp/to_scwrl_1244689726.seq -o /var/tmp/from_scwrl_1244689726.pdb > /var/tmp/scwrl_1244689726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1244689726.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1922641542.pdb -s /var/tmp/to_scwrl_1922641542.seq -o /var/tmp/from_scwrl_1922641542.pdb > /var/tmp/scwrl_1922641542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1922641542.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1748252793.pdb -s /var/tmp/to_scwrl_1748252793.seq -o /var/tmp/from_scwrl_1748252793.pdb > /var/tmp/scwrl_1748252793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1748252793.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2005963998.pdb -s /var/tmp/to_scwrl_2005963998.seq -o /var/tmp/from_scwrl_2005963998.pdb > /var/tmp/scwrl_2005963998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2005963998.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_690646095.pdb -s /var/tmp/to_scwrl_690646095.seq -o /var/tmp/from_scwrl_690646095.pdb > /var/tmp/scwrl_690646095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690646095.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_646199011.pdb -s /var/tmp/to_scwrl_646199011.seq -o /var/tmp/from_scwrl_646199011.pdb > /var/tmp/scwrl_646199011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_646199011.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_788780627.pdb -s /var/tmp/to_scwrl_788780627.seq -o /var/tmp/from_scwrl_788780627.pdb > /var/tmp/scwrl_788780627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_788780627.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1719313863.pdb -s /var/tmp/to_scwrl_1719313863.seq -o /var/tmp/from_scwrl_1719313863.pdb > /var/tmp/scwrl_1719313863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1719313863.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1540182117.pdb -s /var/tmp/to_scwrl_1540182117.seq -o /var/tmp/from_scwrl_1540182117.pdb > /var/tmp/scwrl_1540182117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1540182117.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_167001805.pdb -s /var/tmp/to_scwrl_167001805.seq -o /var/tmp/from_scwrl_167001805.pdb > /var/tmp/scwrl_167001805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_167001805.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_935110909.pdb -s /var/tmp/to_scwrl_935110909.seq -o /var/tmp/from_scwrl_935110909.pdb > /var/tmp/scwrl_935110909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_935110909.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1741088976.pdb -s /var/tmp/to_scwrl_1741088976.seq -o /var/tmp/from_scwrl_1741088976.pdb > /var/tmp/scwrl_1741088976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1741088976.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1434027907.pdb -s /var/tmp/to_scwrl_1434027907.seq -o /var/tmp/from_scwrl_1434027907.pdb > /var/tmp/scwrl_1434027907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1434027907.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1528144719.pdb -s /var/tmp/to_scwrl_1528144719.seq -o /var/tmp/from_scwrl_1528144719.pdb > /var/tmp/scwrl_1528144719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1528144719.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_432944693.pdb -s /var/tmp/to_scwrl_432944693.seq -o /var/tmp/from_scwrl_432944693.pdb > /var/tmp/scwrl_432944693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_432944693.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_158781000.pdb -s /var/tmp/to_scwrl_158781000.seq -o /var/tmp/from_scwrl_158781000.pdb > /var/tmp/scwrl_158781000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_158781000.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1424009734.pdb -s /var/tmp/to_scwrl_1424009734.seq -o /var/tmp/from_scwrl_1424009734.pdb > /var/tmp/scwrl_1424009734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424009734.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1007435549.pdb -s /var/tmp/to_scwrl_1007435549.seq -o /var/tmp/from_scwrl_1007435549.pdb > /var/tmp/scwrl_1007435549.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1007435549.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_748087261.pdb -s /var/tmp/to_scwrl_748087261.seq -o /var/tmp/from_scwrl_748087261.pdb > /var/tmp/scwrl_748087261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_748087261.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_848783141.pdb -s /var/tmp/to_scwrl_848783141.seq -o /var/tmp/from_scwrl_848783141.pdb > /var/tmp/scwrl_848783141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_848783141.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_984636669.pdb -s /var/tmp/to_scwrl_984636669.seq -o /var/tmp/from_scwrl_984636669.pdb > /var/tmp/scwrl_984636669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_984636669.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_950237346.pdb -s /var/tmp/to_scwrl_950237346.seq -o /var/tmp/from_scwrl_950237346.pdb > /var/tmp/scwrl_950237346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_950237346.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2007417927.pdb -s /var/tmp/to_scwrl_2007417927.seq -o /var/tmp/from_scwrl_2007417927.pdb > /var/tmp/scwrl_2007417927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2007417927.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_776083992.pdb -s /var/tmp/to_scwrl_776083992.seq -o /var/tmp/from_scwrl_776083992.pdb > /var/tmp/scwrl_776083992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_776083992.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_809911427.pdb -s /var/tmp/to_scwrl_809911427.seq -o /var/tmp/from_scwrl_809911427.pdb > /var/tmp/scwrl_809911427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_809911427.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1855155271.pdb -s /var/tmp/to_scwrl_1855155271.seq -o /var/tmp/from_scwrl_1855155271.pdb > /var/tmp/scwrl_1855155271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855155271.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1947982043.pdb -s /var/tmp/to_scwrl_1947982043.seq -o /var/tmp/from_scwrl_1947982043.pdb > /var/tmp/scwrl_1947982043.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1947982043.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_106572838.pdb -s /var/tmp/to_scwrl_106572838.seq -o /var/tmp/from_scwrl_106572838.pdb > /var/tmp/scwrl_106572838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_106572838.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1239597046.pdb -s /var/tmp/to_scwrl_1239597046.seq -o /var/tmp/from_scwrl_1239597046.pdb > /var/tmp/scwrl_1239597046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239597046.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_668089190.pdb -s /var/tmp/to_scwrl_668089190.seq -o /var/tmp/from_scwrl_668089190.pdb > /var/tmp/scwrl_668089190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668089190.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2014123710.pdb -s /var/tmp/to_scwrl_2014123710.seq -o /var/tmp/from_scwrl_2014123710.pdb > /var/tmp/scwrl_2014123710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2014123710.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_336803126.pdb -s /var/tmp/to_scwrl_336803126.seq -o /var/tmp/from_scwrl_336803126.pdb > /var/tmp/scwrl_336803126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336803126.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_443247086.pdb -s /var/tmp/to_scwrl_443247086.seq -o /var/tmp/from_scwrl_443247086.pdb > /var/tmp/scwrl_443247086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_443247086.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1614892856.pdb -s /var/tmp/to_scwrl_1614892856.seq -o /var/tmp/from_scwrl_1614892856.pdb > /var/tmp/scwrl_1614892856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1614892856.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_195283478.pdb -s /var/tmp/to_scwrl_195283478.seq -o /var/tmp/from_scwrl_195283478.pdb > /var/tmp/scwrl_195283478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_195283478.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1133893180.pdb -s /var/tmp/to_scwrl_1133893180.seq -o /var/tmp/from_scwrl_1133893180.pdb > /var/tmp/scwrl_1133893180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1133893180.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_113608221.pdb -s /var/tmp/to_scwrl_113608221.seq -o /var/tmp/from_scwrl_113608221.pdb > /var/tmp/scwrl_113608221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_113608221.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_984064105.pdb -s /var/tmp/to_scwrl_984064105.seq -o /var/tmp/from_scwrl_984064105.pdb > /var/tmp/scwrl_984064105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_984064105.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_705723397.pdb -s /var/tmp/to_scwrl_705723397.seq -o /var/tmp/from_scwrl_705723397.pdb > /var/tmp/scwrl_705723397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_705723397.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1653790338.pdb -s /var/tmp/to_scwrl_1653790338.seq -o /var/tmp/from_scwrl_1653790338.pdb > /var/tmp/scwrl_1653790338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1653790338.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1151065909.pdb -s /var/tmp/to_scwrl_1151065909.seq -o /var/tmp/from_scwrl_1151065909.pdb > /var/tmp/scwrl_1151065909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1151065909.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1640834305.pdb -s /var/tmp/to_scwrl_1640834305.seq -o /var/tmp/from_scwrl_1640834305.pdb > /var/tmp/scwrl_1640834305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1640834305.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1247395667.pdb -s /var/tmp/to_scwrl_1247395667.seq -o /var/tmp/from_scwrl_1247395667.pdb > /var/tmp/scwrl_1247395667.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1247395667.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_437610170.pdb -s /var/tmp/to_scwrl_437610170.seq -o /var/tmp/from_scwrl_437610170.pdb > /var/tmp/scwrl_437610170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437610170.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1021495379.pdb -s /var/tmp/to_scwrl_1021495379.seq -o /var/tmp/from_scwrl_1021495379.pdb > /var/tmp/scwrl_1021495379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1021495379.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1680340360.pdb -s /var/tmp/to_scwrl_1680340360.seq -o /var/tmp/from_scwrl_1680340360.pdb > /var/tmp/scwrl_1680340360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1680340360.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_596391171.pdb -s /var/tmp/to_scwrl_596391171.seq -o /var/tmp/from_scwrl_596391171.pdb > /var/tmp/scwrl_596391171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_596391171.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_298021466.pdb -s /var/tmp/to_scwrl_298021466.seq -o /var/tmp/from_scwrl_298021466.pdb > /var/tmp/scwrl_298021466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_298021466.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_540292262.pdb -s /var/tmp/to_scwrl_540292262.seq -o /var/tmp/from_scwrl_540292262.pdb > /var/tmp/scwrl_540292262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_540292262.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1344478431.pdb -s /var/tmp/to_scwrl_1344478431.seq -o /var/tmp/from_scwrl_1344478431.pdb > /var/tmp/scwrl_1344478431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1344478431.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1146804606.pdb -s /var/tmp/to_scwrl_1146804606.seq -o /var/tmp/from_scwrl_1146804606.pdb > /var/tmp/scwrl_1146804606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1146804606.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1524928930.pdb -s /var/tmp/to_scwrl_1524928930.seq -o /var/tmp/from_scwrl_1524928930.pdb > /var/tmp/scwrl_1524928930.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1524928930.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_147232130.pdb -s /var/tmp/to_scwrl_147232130.seq -o /var/tmp/from_scwrl_147232130.pdb > /var/tmp/scwrl_147232130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_147232130.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1006738887.pdb -s /var/tmp/to_scwrl_1006738887.seq -o /var/tmp/from_scwrl_1006738887.pdb > /var/tmp/scwrl_1006738887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006738887.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_153529276.pdb -s /var/tmp/to_scwrl_153529276.seq -o /var/tmp/from_scwrl_153529276.pdb > /var/tmp/scwrl_153529276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_153529276.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_957143558.pdb -s /var/tmp/to_scwrl_957143558.seq -o /var/tmp/from_scwrl_957143558.pdb > /var/tmp/scwrl_957143558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_957143558.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_714410511.pdb -s /var/tmp/to_scwrl_714410511.seq -o /var/tmp/from_scwrl_714410511.pdb > /var/tmp/scwrl_714410511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_714410511.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2101511319.pdb -s /var/tmp/to_scwrl_2101511319.seq -o /var/tmp/from_scwrl_2101511319.pdb > /var/tmp/scwrl_2101511319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2101511319.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1063716396.pdb -s /var/tmp/to_scwrl_1063716396.seq -o /var/tmp/from_scwrl_1063716396.pdb > /var/tmp/scwrl_1063716396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1063716396.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1954007557.pdb -s /var/tmp/to_scwrl_1954007557.seq -o /var/tmp/from_scwrl_1954007557.pdb > /var/tmp/scwrl_1954007557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954007557.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_622116863.pdb -s /var/tmp/to_scwrl_622116863.seq -o /var/tmp/from_scwrl_622116863.pdb > /var/tmp/scwrl_622116863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_622116863.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_930356460.pdb -s /var/tmp/to_scwrl_930356460.seq -o /var/tmp/from_scwrl_930356460.pdb > /var/tmp/scwrl_930356460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_930356460.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_143327037.pdb -s /var/tmp/to_scwrl_143327037.seq -o /var/tmp/from_scwrl_143327037.pdb > /var/tmp/scwrl_143327037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_143327037.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1065363949.pdb -s /var/tmp/to_scwrl_1065363949.seq -o /var/tmp/from_scwrl_1065363949.pdb > /var/tmp/scwrl_1065363949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1065363949.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_397765669.pdb -s /var/tmp/to_scwrl_397765669.seq -o /var/tmp/from_scwrl_397765669.pdb > /var/tmp/scwrl_397765669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_397765669.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_338610515.pdb -s /var/tmp/to_scwrl_338610515.seq -o /var/tmp/from_scwrl_338610515.pdb > /var/tmp/scwrl_338610515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_338610515.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_51773482.pdb -s /var/tmp/to_scwrl_51773482.seq -o /var/tmp/from_scwrl_51773482.pdb > /var/tmp/scwrl_51773482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_51773482.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_511373890.pdb -s /var/tmp/to_scwrl_511373890.seq -o /var/tmp/from_scwrl_511373890.pdb > /var/tmp/scwrl_511373890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_511373890.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1322674619.pdb -s /var/tmp/to_scwrl_1322674619.seq -o /var/tmp/from_scwrl_1322674619.pdb > /var/tmp/scwrl_1322674619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1322674619.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_757496879.pdb -s /var/tmp/to_scwrl_757496879.seq -o /var/tmp/from_scwrl_757496879.pdb > /var/tmp/scwrl_757496879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_757496879.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_17680581.pdb -s /var/tmp/to_scwrl_17680581.seq -o /var/tmp/from_scwrl_17680581.pdb > /var/tmp/scwrl_17680581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_17680581.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_326256882.pdb -s /var/tmp/to_scwrl_326256882.seq -o /var/tmp/from_scwrl_326256882.pdb > /var/tmp/scwrl_326256882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326256882.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_250847538.pdb -s /var/tmp/to_scwrl_250847538.seq -o /var/tmp/from_scwrl_250847538.pdb > /var/tmp/scwrl_250847538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_250847538.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1265076248.pdb -s /var/tmp/to_scwrl_1265076248.seq -o /var/tmp/from_scwrl_1265076248.pdb > /var/tmp/scwrl_1265076248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1265076248.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_763867053.pdb -s /var/tmp/to_scwrl_763867053.seq -o /var/tmp/from_scwrl_763867053.pdb > /var/tmp/scwrl_763867053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_763867053.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1272342916.pdb -s /var/tmp/to_scwrl_1272342916.seq -o /var/tmp/from_scwrl_1272342916.pdb > /var/tmp/scwrl_1272342916.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1272342916.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_797932962.pdb -s /var/tmp/to_scwrl_797932962.seq -o /var/tmp/from_scwrl_797932962.pdb > /var/tmp/scwrl_797932962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797932962.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1360258223.pdb -s /var/tmp/to_scwrl_1360258223.seq -o /var/tmp/from_scwrl_1360258223.pdb > /var/tmp/scwrl_1360258223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1360258223.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1570364382.pdb -s /var/tmp/to_scwrl_1570364382.seq -o /var/tmp/from_scwrl_1570364382.pdb > /var/tmp/scwrl_1570364382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1570364382.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1338225223.pdb -s /var/tmp/to_scwrl_1338225223.seq -o /var/tmp/from_scwrl_1338225223.pdb > /var/tmp/scwrl_1338225223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1338225223.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_557253008.pdb -s /var/tmp/to_scwrl_557253008.seq -o /var/tmp/from_scwrl_557253008.pdb > /var/tmp/scwrl_557253008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557253008.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_569685343.pdb -s /var/tmp/to_scwrl_569685343.seq -o /var/tmp/from_scwrl_569685343.pdb > /var/tmp/scwrl_569685343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_569685343.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_715670508.pdb -s /var/tmp/to_scwrl_715670508.seq -o /var/tmp/from_scwrl_715670508.pdb > /var/tmp/scwrl_715670508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715670508.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_704485138.pdb -s /var/tmp/to_scwrl_704485138.seq -o /var/tmp/from_scwrl_704485138.pdb > /var/tmp/scwrl_704485138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704485138.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1576424229.pdb -s /var/tmp/to_scwrl_1576424229.seq -o /var/tmp/from_scwrl_1576424229.pdb > /var/tmp/scwrl_1576424229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1576424229.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_869199784.pdb -s /var/tmp/to_scwrl_869199784.seq -o /var/tmp/from_scwrl_869199784.pdb > /var/tmp/scwrl_869199784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_869199784.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1661628695.pdb -s /var/tmp/to_scwrl_1661628695.seq -o /var/tmp/from_scwrl_1661628695.pdb > /var/tmp/scwrl_1661628695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661628695.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_143351094.pdb -s /var/tmp/to_scwrl_143351094.seq -o /var/tmp/from_scwrl_143351094.pdb > /var/tmp/scwrl_143351094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_143351094.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_823227456.pdb -s /var/tmp/to_scwrl_823227456.seq -o /var/tmp/from_scwrl_823227456.pdb > /var/tmp/scwrl_823227456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823227456.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_577861445.pdb -s /var/tmp/to_scwrl_577861445.seq -o /var/tmp/from_scwrl_577861445.pdb > /var/tmp/scwrl_577861445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577861445.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2097358651.pdb -s /var/tmp/to_scwrl_2097358651.seq -o /var/tmp/from_scwrl_2097358651.pdb > /var/tmp/scwrl_2097358651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2097358651.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1445344318.pdb -s /var/tmp/to_scwrl_1445344318.seq -o /var/tmp/from_scwrl_1445344318.pdb > /var/tmp/scwrl_1445344318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1445344318.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1508217904.pdb -s /var/tmp/to_scwrl_1508217904.seq -o /var/tmp/from_scwrl_1508217904.pdb > /var/tmp/scwrl_1508217904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1508217904.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_93202041.pdb -s /var/tmp/to_scwrl_93202041.seq -o /var/tmp/from_scwrl_93202041.pdb > /var/tmp/scwrl_93202041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93202041.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_363224620.pdb -s /var/tmp/to_scwrl_363224620.seq -o /var/tmp/from_scwrl_363224620.pdb > /var/tmp/scwrl_363224620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_363224620.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1905983573.pdb -s /var/tmp/to_scwrl_1905983573.seq -o /var/tmp/from_scwrl_1905983573.pdb > /var/tmp/scwrl_1905983573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1905983573.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_431812556.pdb -s /var/tmp/to_scwrl_431812556.seq -o /var/tmp/from_scwrl_431812556.pdb > /var/tmp/scwrl_431812556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_431812556.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_414998102.pdb -s /var/tmp/to_scwrl_414998102.seq -o /var/tmp/from_scwrl_414998102.pdb > /var/tmp/scwrl_414998102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_414998102.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_269873817.pdb -s /var/tmp/to_scwrl_269873817.seq -o /var/tmp/from_scwrl_269873817.pdb > /var/tmp/scwrl_269873817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_269873817.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1754487175.pdb -s /var/tmp/to_scwrl_1754487175.seq -o /var/tmp/from_scwrl_1754487175.pdb > /var/tmp/scwrl_1754487175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754487175.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1172494981.pdb -s /var/tmp/to_scwrl_1172494981.seq -o /var/tmp/from_scwrl_1172494981.pdb > /var/tmp/scwrl_1172494981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1172494981.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_287554398.pdb -s /var/tmp/to_scwrl_287554398.seq -o /var/tmp/from_scwrl_287554398.pdb > /var/tmp/scwrl_287554398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_287554398.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2080744058.pdb -s /var/tmp/to_scwrl_2080744058.seq -o /var/tmp/from_scwrl_2080744058.pdb > /var/tmp/scwrl_2080744058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2080744058.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1423342519.pdb -s /var/tmp/to_scwrl_1423342519.seq -o /var/tmp/from_scwrl_1423342519.pdb > /var/tmp/scwrl_1423342519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423342519.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1552630647.pdb -s /var/tmp/to_scwrl_1552630647.seq -o /var/tmp/from_scwrl_1552630647.pdb > /var/tmp/scwrl_1552630647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1552630647.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_697127464.pdb -s /var/tmp/to_scwrl_697127464.seq -o /var/tmp/from_scwrl_697127464.pdb > /var/tmp/scwrl_697127464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_697127464.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0315)R32.O and (T0315)M33.N only 0.0000000e+00 apart, marking (T0315)M33.N as missing # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_548201789.pdb -s /var/tmp/to_scwrl_548201789.seq -o /var/tmp/from_scwrl_548201789.pdb > /var/tmp/scwrl_548201789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_548201789.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_203079962.pdb -s /var/tmp/to_scwrl_203079962.seq -o /var/tmp/from_scwrl_203079962.pdb > /var/tmp/scwrl_203079962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203079962.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2057385687.pdb -s /var/tmp/to_scwrl_2057385687.seq -o /var/tmp/from_scwrl_2057385687.pdb > /var/tmp/scwrl_2057385687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2057385687.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2118566171.pdb -s /var/tmp/to_scwrl_2118566171.seq -o /var/tmp/from_scwrl_2118566171.pdb > /var/tmp/scwrl_2118566171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2118566171.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1541305186.pdb -s /var/tmp/to_scwrl_1541305186.seq -o /var/tmp/from_scwrl_1541305186.pdb > /var/tmp/scwrl_1541305186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541305186.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_467155048.pdb -s /var/tmp/to_scwrl_467155048.seq -o /var/tmp/from_scwrl_467155048.pdb > /var/tmp/scwrl_467155048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467155048.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_540767867.pdb -s /var/tmp/to_scwrl_540767867.seq -o /var/tmp/from_scwrl_540767867.pdb > /var/tmp/scwrl_540767867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_540767867.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_109492047.pdb -s /var/tmp/to_scwrl_109492047.seq -o /var/tmp/from_scwrl_109492047.pdb > /var/tmp/scwrl_109492047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_109492047.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1171640185.pdb -s /var/tmp/to_scwrl_1171640185.seq -o /var/tmp/from_scwrl_1171640185.pdb > /var/tmp/scwrl_1171640185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1171640185.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_2117192097.pdb -s /var/tmp/to_scwrl_2117192097.seq -o /var/tmp/from_scwrl_2117192097.pdb > /var/tmp/scwrl_2117192097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117192097.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_978691831.pdb -s /var/tmp/to_scwrl_978691831.seq -o /var/tmp/from_scwrl_978691831.pdb > /var/tmp/scwrl_978691831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_978691831.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_685785235.pdb -s /var/tmp/to_scwrl_685785235.seq -o /var/tmp/from_scwrl_685785235.pdb > /var/tmp/scwrl_685785235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_685785235.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_113059544.pdb -s /var/tmp/to_scwrl_113059544.seq -o /var/tmp/from_scwrl_113059544.pdb > /var/tmp/scwrl_113059544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_113059544.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1801919286.pdb -s /var/tmp/to_scwrl_1801919286.seq -o /var/tmp/from_scwrl_1801919286.pdb > /var/tmp/scwrl_1801919286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1801919286.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1263646679.pdb -s /var/tmp/to_scwrl_1263646679.seq -o /var/tmp/from_scwrl_1263646679.pdb > /var/tmp/scwrl_1263646679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1263646679.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_62934548.pdb -s /var/tmp/to_scwrl_62934548.seq -o /var/tmp/from_scwrl_62934548.pdb > /var/tmp/scwrl_62934548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62934548.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1099779958.pdb -s /var/tmp/to_scwrl_1099779958.seq -o /var/tmp/from_scwrl_1099779958.pdb > /var/tmp/scwrl_1099779958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1099779958.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_624380937.pdb -s /var/tmp/to_scwrl_624380937.seq -o /var/tmp/from_scwrl_624380937.pdb > /var/tmp/scwrl_624380937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_624380937.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_156136590.pdb -s /var/tmp/to_scwrl_156136590.seq -o /var/tmp/from_scwrl_156136590.pdb > /var/tmp/scwrl_156136590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_156136590.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_1463004578.pdb -s /var/tmp/to_scwrl_1463004578.seq -o /var/tmp/from_scwrl_1463004578.pdb > /var/tmp/scwrl_1463004578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463004578.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0315 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_382880863.pdb -s /var/tmp/to_scwrl_382880863.seq -o /var/tmp/from_scwrl_382880863.pdb > /var/tmp/scwrl_382880863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_382880863.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 232 ; scwrl3 -i /var/tmp/to_scwrl_587949146.pdb -s /var/tmp/to_scwrl_587949146.seq -o /var/tmp/from_scwrl_587949146.pdb > /var/tmp/scwrl_587949146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_587949146.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 49.2005 sec, elapsed time= 601.831 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -233.332 shub_TS1 costs 0 real_cost = -229.492 panther2_TS1-scwrl costs 0 real_cost = -231.88 panther2_TS1 costs 0 real_cost = -226.273 nFOLD_TS5-scwrl costs 0 real_cost = 194.214 nFOLD_TS5 costs 0 real_cost = 194.229 nFOLD_TS4-scwrl costs 0 real_cost = 61.3516 nFOLD_TS4 costs 0 real_cost = 207.744 nFOLD_TS3-scwrl costs 0 real_cost = -247.305 nFOLD_TS3 costs 0 real_cost = -97.7389 nFOLD_TS2-scwrl costs 0 real_cost = -246.86 nFOLD_TS2 costs 0 real_cost = -99.9002 nFOLD_TS1-scwrl costs 0 real_cost = -283.978 nFOLD_TS1 costs 0 real_cost = -136.754 mGen-3D_TS1-scwrl costs 0 real_cost = -245.634 mGen-3D_TS1 costs 0 real_cost = -99.2205 keasar-server_TS5-scwrl costs 0 real_cost = -218.636 keasar-server_TS5 costs 0 real_cost = -200.667 keasar-server_TS4-scwrl costs 0 real_cost = -224.787 keasar-server_TS4 costs 0 real_cost = -212.166 keasar-server_TS3-scwrl costs 0 real_cost = -212.196 keasar-server_TS3 costs 0 real_cost = -194.209 keasar-server_TS2-scwrl costs 0 real_cost = -217.669 keasar-server_TS2 costs 0 real_cost = -208.323 keasar-server_TS1-scwrl costs 0 real_cost = -230.456 keasar-server_TS1 costs 0 real_cost = -215.882 karypis.srv_TS5-scwrl costs 0 real_cost = 179.769 karypis.srv_TS5 costs 0 real_cost = 179.848 karypis.srv_TS4-scwrl costs 0 real_cost = 98.2375 karypis.srv_TS4 costs 0 real_cost = 98.0147 karypis.srv_TS3-scwrl costs 0 real_cost = 63.0134 karypis.srv_TS3 costs 0 real_cost = 63.1862 karypis.srv_TS2-scwrl costs 0 real_cost = 33.097 karypis.srv_TS2 costs 0 real_cost = 33.1043 karypis.srv_TS1-scwrl costs 0 real_cost = 18.0857 karypis.srv_TS1 costs 0 real_cost = 16.0583 karypis.srv.4_TS5-scwrl costs 0 real_cost = 305.319 karypis.srv.4_TS5 costs 0 real_cost = 301.657 karypis.srv.4_TS4-scwrl costs 0 real_cost = 280.94 karypis.srv.4_TS4 costs 0 real_cost = 280.94 karypis.srv.4_TS3-scwrl costs 0 real_cost = 278.609 karypis.srv.4_TS3 costs 0 real_cost = 279.562 karypis.srv.4_TS2-scwrl costs 0 real_cost = 325.133 karypis.srv.4_TS2 costs 0 real_cost = 325.378 karypis.srv.4_TS1-scwrl costs 0 real_cost = 304.94 karypis.srv.4_TS1 costs 0 real_cost = 304.086 karypis.srv.2_TS5-scwrl costs 0 real_cost = 41.7511 karypis.srv.2_TS5 costs 0 real_cost = 41.7511 karypis.srv.2_TS4-scwrl costs 0 real_cost = 35.6417 karypis.srv.2_TS4 costs 0 real_cost = 35.7604 karypis.srv.2_TS3-scwrl costs 0 real_cost = -275.885 karypis.srv.2_TS3 costs 0 real_cost = -275.857 karypis.srv.2_TS2-scwrl costs 0 real_cost = -281.072 karypis.srv.2_TS2 costs 0 real_cost = -281.906 karypis.srv.2_TS1-scwrl costs 0 real_cost = -280.825 karypis.srv.2_TS1 costs 0 real_cost = -280.798 gtg_AL5-scwrl costs 0 real_cost = 255.004 gtg_AL5 costs 0 real_cost = 361.74 gtg_AL4-scwrl costs 0 real_cost = -77.5283 gtg_AL4 costs 0 real_cost = 65.7731 gtg_AL3-scwrl costs 0 real_cost = -89.8138 gtg_AL3 costs 0 real_cost = 47.0788 gtg_AL2-scwrl costs 0 real_cost = -69.9443 gtg_AL2 costs 0 real_cost = 83.1201 gtg_AL1-scwrl costs 0 real_cost = -105.089 gtg_AL1 costs 0 real_cost = 44.992 forecast-s_AL5-scwrl costs 0 real_cost = 93.8637 forecast-s_AL5 costs 0 real_cost = 283.766 forecast-s_AL4-scwrl costs 0 real_cost = 266.991 forecast-s_AL4 costs 0 real_cost = 434.327 forecast-s_AL3-scwrl costs 0 real_cost = 52.7886 forecast-s_AL3 costs 0 real_cost = 229.583 forecast-s_AL2-scwrl costs 0 real_cost = 253.105 forecast-s_AL2 costs 0 real_cost = 253.105 forecast-s_AL1-scwrl costs 0 real_cost = -271.198 forecast-s_AL1 costs 0 real_cost = -81.6366 beautshotbase_TS1-scwrl costs 0 real_cost = -260.855 beautshotbase_TS1 costs 0 real_cost = -256.607 beautshot_TS1-scwrl costs 0 real_cost = -238.464 beautshot_TS1 costs 0 real_cost = -233.075 Zhang-Server_TS5-scwrl costs 0 real_cost = -291.412 Zhang-Server_TS5 costs 0 real_cost = -289.598 Zhang-Server_TS4-scwrl costs 0 real_cost = -311.08 Zhang-Server_TS4 costs 0 real_cost = -306.976 Zhang-Server_TS3-scwrl costs 0 real_cost = -312.858 Zhang-Server_TS3 costs 0 real_cost = -313.084 Zhang-Server_TS2-scwrl costs 0 real_cost = -314.901 Zhang-Server_TS2 costs 0 real_cost = -306.312 Zhang-Server_TS1-scwrl costs 0 real_cost = -308.274 Zhang-Server_TS1 costs 0 real_cost = -304.418 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 70.2972 UNI-EID_sfst_AL5 costs 0 real_cost = 235.444 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -239.046 UNI-EID_sfst_AL4 costs 0 real_cost = -50.0724 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -253.493 UNI-EID_sfst_AL3 costs 0 real_cost = -56.6861 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -272.343 UNI-EID_sfst_AL2 costs 0 real_cost = -92.1519 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -242.094 UNI-EID_sfst_AL1 costs 0 real_cost = -50.4941 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -88.5575 UNI-EID_expm_TS1 costs 0 real_cost = -88.6071 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 52.6886 UNI-EID_bnmx_TS5 costs 0 real_cost = 227.81 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -239.046 UNI-EID_bnmx_TS4 costs 0 real_cost = -50.0724 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -253.493 UNI-EID_bnmx_TS3 costs 0 real_cost = -56.6861 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -272.343 UNI-EID_bnmx_TS2 costs 0 real_cost = -92.1519 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -242.094 UNI-EID_bnmx_TS1 costs 0 real_cost = -50.4941 SPARKS2_TS5-scwrl costs 0 real_cost = 10.373 SPARKS2_TS5 costs 0 real_cost = 11.6839 SPARKS2_TS4-scwrl costs 0 real_cost = -261.946 SPARKS2_TS4 costs 0 real_cost = -262.052 SPARKS2_TS3-scwrl costs 0 real_cost = -265.295 SPARKS2_TS3 costs 0 real_cost = -266.344 SPARKS2_TS2-scwrl costs 0 real_cost = -253.43 SPARKS2_TS2 costs 0 real_cost = -248.09 SPARKS2_TS1-scwrl costs 0 real_cost = -277.514 SPARKS2_TS1 costs 0 real_cost = -280.34 SP4_TS5-scwrl costs 0 real_cost = -12.7009 SP4_TS5 costs 0 real_cost = -11.365 SP4_TS4-scwrl costs 0 real_cost = -262.617 SP4_TS4 costs 0 real_cost = -258.895 SP4_TS3-scwrl costs 0 real_cost = -249.232 SP4_TS3 costs 0 real_cost = -252.016 SP4_TS2-scwrl costs 0 real_cost = -277.981 SP4_TS2 costs 0 real_cost = -278.45 SP4_TS1-scwrl costs 0 real_cost = -251.699 SP4_TS1 costs 0 real_cost = -246.305 SP3_TS5-scwrl costs 0 real_cost = -12.1476 SP3_TS5 costs 0 real_cost = -11.0089 SP3_TS4-scwrl costs 0 real_cost = -261.946 SP3_TS4 costs 0 real_cost = -262.052 SP3_TS3-scwrl costs 0 real_cost = -265.295 SP3_TS3 costs 0 real_cost = -266.344 SP3_TS2-scwrl costs 0 real_cost = -254.207 SP3_TS2 costs 0 real_cost = -244.12 SP3_TS1-scwrl costs 0 real_cost = -277.514 SP3_TS1 costs 0 real_cost = -280.34 SAM_T06_server_TS5-scwrl costs 0 real_cost = -214.254 SAM_T06_server_TS5 costs 0 real_cost = -232.791 SAM_T06_server_TS4-scwrl costs 0 real_cost = -208.779 SAM_T06_server_TS4 costs 0 real_cost = -209.34 SAM_T06_server_TS3-scwrl costs 0 real_cost = -216.826 SAM_T06_server_TS3 costs 0 real_cost = -215.791 SAM_T06_server_TS2-scwrl costs 0 real_cost = -230.057 SAM_T06_server_TS2 costs 0 real_cost = -255.429 SAM_T06_server_TS1-scwrl costs 0 real_cost = -230.916 SAM_T06_server_TS1 costs 0 real_cost = -230.502 SAM-T99_AL5-scwrl costs 0 real_cost = -242.597 SAM-T99_AL5 costs 0 real_cost = -46.3239 SAM-T99_AL4-scwrl costs 0 real_cost = -236.253 SAM-T99_AL4 costs 0 real_cost = -47.6478 SAM-T99_AL3-scwrl costs 0 real_cost = -239.151 SAM-T99_AL3 costs 0 real_cost = -56.8894 SAM-T99_AL2-scwrl costs 0 real_cost = -250.73 SAM-T99_AL2 costs 0 real_cost = -64.6089 SAM-T99_AL1-scwrl costs 0 real_cost = -271.901 SAM-T99_AL1 costs 0 real_cost = -89.9282 SAM-T02_AL5-scwrl costs 0 real_cost = 125.926 SAM-T02_AL5 costs 0 real_cost = 274.149 SAM-T02_AL4-scwrl costs 0 real_cost = -235.712 SAM-T02_AL4 costs 0 real_cost = -43.5305 SAM-T02_AL3-scwrl costs 0 real_cost = -240.081 SAM-T02_AL3 costs 0 real_cost = -53.6761 SAM-T02_AL2-scwrl costs 0 real_cost = -240.873 SAM-T02_AL2 costs 0 real_cost = -54.233 SAM-T02_AL1-scwrl costs 0 real_cost = -256.043 SAM-T02_AL1 costs 0 real_cost = -80.0039 ROKKY_TS5-scwrl costs 0 real_cost = 103.518 ROKKY_TS5 costs 0 real_cost = 106.084 ROKKY_TS4-scwrl costs 0 real_cost = -243.111 ROKKY_TS4 costs 0 real_cost = -240.791 ROKKY_TS3-scwrl costs 0 real_cost = -243.994 ROKKY_TS3 costs 0 real_cost = -236.995 ROKKY_TS2-scwrl costs 0 real_cost = -256.832 ROKKY_TS2 costs 0 real_cost = -254.711 ROKKY_TS1-scwrl costs 0 real_cost = -283.065 ROKKY_TS1 costs 0 real_cost = -282.296 ROBETTA_TS5-scwrl costs 0 real_cost = -266.675 ROBETTA_TS5 costs 0 real_cost = -266.053 ROBETTA_TS4-scwrl costs 0 real_cost = -290.838 ROBETTA_TS4 costs 0 real_cost = -292.054 ROBETTA_TS3-scwrl costs 0 real_cost = -286.651 ROBETTA_TS3 costs 0 real_cost = -285.124 ROBETTA_TS2-scwrl costs 0 real_cost = -262.145 ROBETTA_TS2 costs 0 real_cost = -263.831 ROBETTA_TS1-scwrl costs 0 real_cost = -290.89 ROBETTA_TS1 costs 0 real_cost = -292.926 RAPTOR_TS5-scwrl costs 0 real_cost = -277.915 RAPTOR_TS5 costs 0 real_cost = -275.702 RAPTOR_TS4-scwrl costs 0 real_cost = -270.535 RAPTOR_TS4 costs 0 real_cost = -268.616 RAPTOR_TS3-scwrl costs 0 real_cost = 34.0851 RAPTOR_TS3 costs 0 real_cost = 30.3135 RAPTOR_TS2-scwrl costs 0 real_cost = -48.8731 RAPTOR_TS2 costs 0 real_cost = -38.9773 RAPTOR_TS1-scwrl costs 0 real_cost = -277.956 RAPTOR_TS1 costs 0 real_cost = -281.297 RAPTORESS_TS5-scwrl costs 0 real_cost = -277.901 RAPTORESS_TS5 costs 0 real_cost = -268.072 RAPTORESS_TS4-scwrl costs 0 real_cost = -272.352 RAPTORESS_TS4 costs 0 real_cost = -263.032 RAPTORESS_TS3-scwrl costs 0 real_cost = 34.2962 RAPTORESS_TS3 costs 0 real_cost = 41.6506 RAPTORESS_TS2-scwrl costs 0 real_cost = -30.6401 RAPTORESS_TS2 costs 0 real_cost = -26.9257 RAPTORESS_TS1-scwrl costs 0 real_cost = -272.1 RAPTORESS_TS1 costs 0 real_cost = -271.905 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -277.514 RAPTOR-ACE_TS5 costs 0 real_cost = -280.34 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -258.878 RAPTOR-ACE_TS4 costs 0 real_cost = -257.449 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -251.015 RAPTOR-ACE_TS3 costs 0 real_cost = -246.675 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -278.477 RAPTOR-ACE_TS2 costs 0 real_cost = -277.895 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -275.547 RAPTOR-ACE_TS1 costs 0 real_cost = -276.795 Pmodeller6_TS5-scwrl costs 0 real_cost = -250.111 Pmodeller6_TS5 costs 0 real_cost = -249.33 Pmodeller6_TS4-scwrl costs 0 real_cost = -290.89 Pmodeller6_TS4 costs 0 real_cost = -292.926 Pmodeller6_TS3-scwrl costs 0 real_cost = -244.722 Pmodeller6_TS3 costs 0 real_cost = -244.463 Pmodeller6_TS2-scwrl costs 0 real_cost = -253.773 Pmodeller6_TS2 costs 0 real_cost = -253.769 Pmodeller6_TS1-scwrl costs 0 real_cost = -266.675 Pmodeller6_TS1 costs 0 real_cost = -266.053 Phyre-2_TS5-scwrl costs 0 real_cost = -247.909 Phyre-2_TS5 costs 0 real_cost = -249.334 Phyre-2_TS4-scwrl costs 0 real_cost = -284.907 Phyre-2_TS4 costs 0 real_cost = -284.025 Phyre-2_TS3-scwrl costs 0 real_cost = -201.049 Phyre-2_TS3 costs 0 real_cost = -201.941 Phyre-2_TS2-scwrl costs 0 real_cost = -209.383 Phyre-2_TS2 costs 0 real_cost = -210.024 Phyre-2_TS1-scwrl costs 0 real_cost = -209.707 Phyre-2_TS1 costs 0 real_cost = -210.916 Phyre-1_TS1-scwrl costs 0 real_cost = -254.996 Phyre-1_TS1 costs 0 real_cost = -254.884 Pcons6_TS5-scwrl costs 0 real_cost = -259.516 Pcons6_TS5 costs 0 real_cost = -270.01 Pcons6_TS4-scwrl costs 0 real_cost = -260.13 Pcons6_TS4 costs 0 real_cost = -265.284 Pcons6_TS3-scwrl costs 0 real_cost = -272.759 Pcons6_TS3 costs 0 real_cost = -272.236 Pcons6_TS2-scwrl costs 0 real_cost = -274.209 Pcons6_TS2 costs 0 real_cost = -279.848 Pcons6_TS1-scwrl costs 0 real_cost = -259.516 Pcons6_TS1 costs 0 real_cost = -270.01 PROTINFO_TS5-scwrl costs 0 real_cost = -247.732 PROTINFO_TS5 costs 0 real_cost = -247.313 PROTINFO_TS4-scwrl costs 0 real_cost = -268.752 PROTINFO_TS4 costs 0 real_cost = -268.603 PROTINFO_TS3-scwrl costs 0 real_cost = -282.157 PROTINFO_TS3 costs 0 real_cost = -284.316 PROTINFO_TS2-scwrl costs 0 real_cost = -250.871 PROTINFO_TS2 costs 0 real_cost = -258.163 PROTINFO_TS1-scwrl costs 0 real_cost = -260.602 PROTINFO_TS1 costs 0 real_cost = -265.195 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -264.404 PROTINFO-AB_TS5 costs 0 real_cost = -267.429 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -252.908 PROTINFO-AB_TS4 costs 0 real_cost = -254.033 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -264.465 PROTINFO-AB_TS3 costs 0 real_cost = -268.773 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -260.602 PROTINFO-AB_TS2 costs 0 real_cost = -265.195 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -268.752 PROTINFO-AB_TS1 costs 0 real_cost = -268.603 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -212.96 NN_PUT_lab_TS1 costs 0 real_cost = -213.667 MetaTasser_TS3-scwrl costs 0 real_cost = 123.281 MetaTasser_TS3 costs 0 real_cost = 135.316 MetaTasser_TS2-scwrl costs 0 real_cost = 75.896 MetaTasser_TS2 costs 0 real_cost = 73.8444 MetaTasser_TS1-scwrl costs 0 real_cost = -291.868 MetaTasser_TS1 costs 0 real_cost = -283.909 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -7.89958 Ma-OPUS-server_TS5 costs 0 real_cost = 1.25539 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -266.36 Ma-OPUS-server_TS4 costs 0 real_cost = -266.51 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -264.983 Ma-OPUS-server_TS3 costs 0 real_cost = -258.943 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -246.59 Ma-OPUS-server_TS2 costs 0 real_cost = -243.255 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -274.89 Ma-OPUS-server_TS1 costs 0 real_cost = -276.186 LOOPP_TS5-scwrl costs 0 real_cost = 58.7845 LOOPP_TS5 costs 0 real_cost = 62.4196 LOOPP_TS4-scwrl costs 0 real_cost = -225.906 LOOPP_TS4 costs 0 real_cost = -220.139 LOOPP_TS3-scwrl costs 0 real_cost = -220.877 LOOPP_TS3 costs 0 real_cost = -212.906 LOOPP_TS2-scwrl costs 0 real_cost = -208.864 LOOPP_TS2 costs 0 real_cost = -206.447 LOOPP_TS1-scwrl costs 0 real_cost = -212.96 LOOPP_TS1 costs 0 real_cost = -213.667 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 351.151 Huber-Torda-Server_TS5 costs 0 real_cost = 437.344 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -201.122 Huber-Torda-Server_TS4 costs 0 real_cost = -64.8134 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -86.1946 Huber-Torda-Server_TS3 costs 0 real_cost = 46.3636 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -190.636 Huber-Torda-Server_TS2 costs 0 real_cost = -51.4733 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -250.975 Huber-Torda-Server_TS1 costs 0 real_cost = -109.666 HHpred3_TS1-scwrl costs 0 real_cost = -336.599 HHpred3_TS1 costs 0 real_cost = -338.072 HHpred2_TS1-scwrl costs 0 real_cost = -333.606 HHpred2_TS1 costs 0 real_cost = -338.508 HHpred1_TS1-scwrl costs 0 real_cost = -250.779 HHpred1_TS1 costs 0 real_cost = -254.901 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -256.457 GeneSilicoMetaServer_TS5 costs 0 real_cost = -251.242 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -281.032 GeneSilicoMetaServer_TS4 costs 0 real_cost = -286.334 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -278.86 GeneSilicoMetaServer_TS3 costs 0 real_cost = -281.889 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -276.233 GeneSilicoMetaServer_TS2 costs 0 real_cost = -274.401 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -276.249 GeneSilicoMetaServer_TS1 costs 0 real_cost = -273.54 FUNCTION_TS5-scwrl costs 0 real_cost = -241.458 FUNCTION_TS5 costs 0 real_cost = -242.424 FUNCTION_TS4-scwrl costs 0 real_cost = -210.017 FUNCTION_TS4 costs 0 real_cost = -211.683 FUNCTION_TS3-scwrl costs 0 real_cost = -240.817 FUNCTION_TS3 costs 0 real_cost = -248.559 FUNCTION_TS2-scwrl costs 0 real_cost = -270.911 FUNCTION_TS2 costs 0 real_cost = -273.944 FUNCTION_TS1-scwrl costs 0 real_cost = -263.502 FUNCTION_TS1 costs 0 real_cost = -265.148 FUGUE_AL5-scwrl costs 0 real_cost = 136.415 FUGUE_AL5 costs 0 real_cost = 333.428 FUGUE_AL4-scwrl costs 0 real_cost = 202.65 FUGUE_AL4 costs 0 real_cost = 400.508 FUGUE_AL3-scwrl costs 0 real_cost = 147.7 FUGUE_AL3 costs 0 real_cost = 323.531 FUGUE_AL2-scwrl costs 0 real_cost = 56.9868 FUGUE_AL2 costs 0 real_cost = 237.737 FUGUE_AL1-scwrl costs 0 real_cost = -278.512 FUGUE_AL1 costs 0 real_cost = -85.8463 FUGMOD_TS5-scwrl costs 0 real_cost = 147.238 FUGMOD_TS5 costs 0 real_cost = 143.644 FUGMOD_TS4-scwrl costs 0 real_cost = 206.882 FUGMOD_TS4 costs 0 real_cost = 206.796 FUGMOD_TS3-scwrl costs 0 real_cost = 121.548 FUGMOD_TS3 costs 0 real_cost = 121.538 FUGMOD_TS2-scwrl costs 0 real_cost = 35.1178 FUGMOD_TS2 costs 0 real_cost = 38.0875 FUGMOD_TS1-scwrl costs 0 real_cost = -277.438 FUGMOD_TS1 costs 0 real_cost = -279.398 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 263.784 FPSOLVER-SERVER_TS5 costs 0 real_cost = 272.378 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 299.932 FPSOLVER-SERVER_TS4 costs 0 real_cost = 303.746 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 284.751 FPSOLVER-SERVER_TS3 costs 0 real_cost = 288.964 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 297.518 FPSOLVER-SERVER_TS2 costs 0 real_cost = 305.013 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 305.913 FPSOLVER-SERVER_TS1 costs 0 real_cost = 306.355 FORTE2_AL5-scwrl costs 0 real_cost = 168.686 FORTE2_AL5 costs 0 real_cost = 338.023 FORTE2_AL4-scwrl costs 0 real_cost = 183.708 FORTE2_AL4 costs 0 real_cost = 374.737 FORTE2_AL3-scwrl costs 0 real_cost = 72.4916 FORTE2_AL3 costs 0 real_cost = 246.006 FORTE2_AL2-scwrl costs 0 real_cost = -283.996 FORTE2_AL2 costs 0 real_cost = -90.7439 FORTE2_AL1-scwrl costs 0 real_cost = 189.412 FORTE2_AL1 costs 0 real_cost = 384.034 FORTE1_AL5-scwrl costs 0 real_cost = 346.165 FORTE1_AL5 costs 0 real_cost = 346.165 FORTE1_AL4-scwrl costs 0 real_cost = 69.5932 FORTE1_AL4 costs 0 real_cost = 253.187 FORTE1_AL3-scwrl costs 0 real_cost = 167.472 FORTE1_AL3 costs 0 real_cost = 352.896 FORTE1_AL2-scwrl costs 0 real_cost = -278.546 FORTE1_AL2 costs 0 real_cost = -85.3855 FORTE1_AL1-scwrl costs 0 real_cost = 189.412 FORTE1_AL1 costs 0 real_cost = 384.034 FOLDpro_TS5-scwrl costs 0 real_cost = -243.44 FOLDpro_TS5 costs 0 real_cost = -241.314 FOLDpro_TS4-scwrl costs 0 real_cost = -18.0547 FOLDpro_TS4 costs 0 real_cost = -16.6105 FOLDpro_TS3-scwrl costs 0 real_cost = 13.6018 FOLDpro_TS3 costs 0 real_cost = 15.7644 FOLDpro_TS2-scwrl costs 0 real_cost = -337.56 FOLDpro_TS2 costs 0 real_cost = -336.903 FOLDpro_TS1-scwrl costs 0 real_cost = -340.195 FOLDpro_TS1 costs 0 real_cost = -334.645 FAMS_TS5-scwrl costs 0 real_cost = -270.911 FAMS_TS5 costs 0 real_cost = -273.944 FAMS_TS4-scwrl costs 0 real_cost = -235.397 FAMS_TS4 costs 0 real_cost = -236.601 FAMS_TS3-scwrl costs 0 real_cost = -251.17 FAMS_TS3 costs 0 real_cost = -246.615 FAMS_TS2-scwrl costs 0 real_cost = -273.874 FAMS_TS2 costs 0 real_cost = -270.425 FAMS_TS1-scwrl costs 0 real_cost = -289.184 FAMS_TS1 costs 0 real_cost = -288.243 FAMSD_TS5-scwrl costs 0 real_cost = -286.795 FAMSD_TS5 costs 0 real_cost = -277.303 FAMSD_TS4-scwrl costs 0 real_cost = -255.126 FAMSD_TS4 costs 0 real_cost = -265.137 FAMSD_TS3-scwrl costs 0 real_cost = -278.306 FAMSD_TS3 costs 0 real_cost = -270.313 FAMSD_TS2-scwrl costs 0 real_cost = -235.397 FAMSD_TS2 costs 0 real_cost = -236.601 FAMSD_TS1-scwrl costs 0 real_cost = -280.62 FAMSD_TS1 costs 0 real_cost = -279.045 Distill_TS5-scwrl costs 0 real_cost = 364.721 Distill_TS4-scwrl costs 0 real_cost = 361.607 Distill_TS3-scwrl costs 0 real_cost = 361.046 Distill_TS2-scwrl costs 0 real_cost = 366.075 Distill_TS1-scwrl costs 0 real_cost = 344.908 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 120.847 CaspIta-FOX_TS5 costs 0 real_cost = 116.868 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -257.041 CaspIta-FOX_TS4 costs 0 real_cost = -256.539 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -254.979 CaspIta-FOX_TS3 costs 0 real_cost = -260.354 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -279.04 CaspIta-FOX_TS2 costs 0 real_cost = -280.599 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -256.687 CaspIta-FOX_TS1 costs 0 real_cost = -258.343 CPHmodels_TS1-scwrl costs 0 real_cost = -257.777 CPHmodels_TS1 costs 0 real_cost = -264.593 CIRCLE_TS5-scwrl costs 0 real_cost = -236.15 CIRCLE_TS5 costs 0 real_cost = -238.734 CIRCLE_TS4-scwrl costs 0 real_cost = -251.17 CIRCLE_TS4 costs 0 real_cost = -246.615 CIRCLE_TS3-scwrl costs 0 real_cost = -243.914 CIRCLE_TS3 costs 0 real_cost = -242.44 CIRCLE_TS2-scwrl costs 0 real_cost = -235.682 CIRCLE_TS2 costs 0 real_cost = -241.055 CIRCLE_TS1-scwrl costs 0 real_cost = -273.874 CIRCLE_TS1 costs 0 real_cost = -270.425 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -265.676 Bilab-ENABLE_TS5 costs 0 real_cost = -265.676 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -251.061 Bilab-ENABLE_TS4 costs 0 real_cost = -251.061 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -245.809 Bilab-ENABLE_TS3 costs 0 real_cost = -245.684 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -242.868 Bilab-ENABLE_TS2 costs 0 real_cost = -242.868 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -255.668 Bilab-ENABLE_TS1 costs 0 real_cost = -255.691 BayesHH_TS1-scwrl costs 0 real_cost = -346.108 BayesHH_TS1 costs 0 real_cost = -344.862 ABIpro_TS5-scwrl costs 0 real_cost = 203.641 ABIpro_TS5 costs 0 real_cost = 204.688 ABIpro_TS4-scwrl costs 0 real_cost = 239.496 ABIpro_TS4 costs 0 real_cost = 239.498 ABIpro_TS3-scwrl costs 0 real_cost = 216.853 ABIpro_TS3 costs 0 real_cost = 216.262 ABIpro_TS2-scwrl costs 0 real_cost = 205.156 ABIpro_TS2 costs 0 real_cost = 205.148 ABIpro_TS1-scwrl costs 0 real_cost = 226.313 ABIpro_TS1 costs 0 real_cost = 226.313 3Dpro_TS5-scwrl costs 0 real_cost = 144.06 3Dpro_TS5 costs 0 real_cost = 142.874 3Dpro_TS4-scwrl costs 0 real_cost = 19.2108 3Dpro_TS4 costs 0 real_cost = 19.8113 3Dpro_TS3-scwrl costs 0 real_cost = 166.891 3Dpro_TS3 costs 0 real_cost = 168.479 3Dpro_TS2-scwrl costs 0 real_cost = -328.487 3Dpro_TS2 costs 0 real_cost = -332.523 3Dpro_TS1-scwrl costs 0 real_cost = -339.661 3Dpro_TS1 costs 0 real_cost = -340.507 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -262.206 3D-JIGSAW_TS4 costs 0 real_cost = -258.227 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -223.134 3D-JIGSAW_TS3 costs 0 real_cost = -220.957 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -219.185 3D-JIGSAW_TS2 costs 0 real_cost = -211.477 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -222.788 3D-JIGSAW_TS1 costs 0 real_cost = -217.431 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -264.567 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -260.323 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -280.438 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -277.57 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -275.363 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -275.927 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -270.191 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -276.882 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -261.131 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -259.425 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -239.654 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -245.484 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -210.13 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -210.206 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -242.542 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -248.895 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -248.126 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -248.2 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -247.812 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -247.883 T0315.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -269.024 T0315.try3-opt2.pdb.gz costs 0 real_cost = -269.918 T0315.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -269.184 T0315.try3-opt1.pdb.gz costs 0 real_cost = -267.241 T0315.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -267.311 T0315.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -262.377 T0315.try2-opt2.pdb.gz costs 0 real_cost = -264.557 T0315.try2-opt1.pdb.gz costs 0 real_cost = -262.301 T0315.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -265.801 T0315.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -270.995 T0315.try1-opt2.pdb.gz costs 0 real_cost = -274.313 T0315.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -274.142 T0315.try1-opt1.pdb.gz costs 0 real_cost = -272.994 T0315.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -274.099 ../model5.ts-submitted costs 0 real_cost = -228.082 ../model4.ts-submitted costs 0 real_cost = -265.375 ../model3.ts-submitted costs 0 real_cost = -274.452 ../model2.ts-submitted costs 0 real_cost = -262.481 ../model1.ts-submitted costs 0 real_cost = -270.022 align5 costs 0 real_cost = -7.8626 align4 costs 0 real_cost = -244.656 align3 costs 0 real_cost = -223.652 align2 costs 0 real_cost = -225.497 align1 costs 0 real_cost = -267.096 T0315.try1-opt2.pdb costs 0 real_cost = -274.314 model5-scwrl costs 0 real_cost = -206.234 model5.ts-submitted costs 0 real_cost = -228.082 model4-scwrl costs 0 real_cost = -240.502 model4.ts-submitted costs 0 real_cost = -265.375 model3-scwrl costs 0 real_cost = -275.489 model3.ts-submitted costs 0 real_cost = -274.452 model2-scwrl costs 0 real_cost = -264.629 model2.ts-submitted costs 0 real_cost = -262.481 model1-scwrl costs 0 real_cost = -271.053 model1.ts-submitted costs 0 real_cost = -270.016 2gzxA costs 0 real_cost = -885.6 # command:CPU_time= 1633.46 sec, elapsed time= 2191.38 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty