(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0314 PaT4, Pseudomonas aeruginosa, 106 res
                 10        20        30        40        50        60  
                 |         |         |         |         |         |  
   1 ...MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVM
   2 ...MAITSQDICNAADQLKGFVGFHGKRGVHIVRFSEDAFGMDVADASITPCSEFVWRPEQGLRM
   3 gyvMAITSQDICNAADQLKGFVGFHGKRGVHIVRFSEDAFGMDVADASITPCSEFVWRPEQGQRM
   4 ...MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVM
   5 ...MAITSQDICNAADQLKGFVGFHGKRGTHIVRFSEDSFGMDVADDSITPCSEFVWRAEGDRRM
   6 ...MSISSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVPDDSITPTSEFVWSSVRDDVM
   7 ...MSITSELICQAADQLKGFVGFNRKTGRYIVRFSEDSFGMDVADDAIVPAHEFVWAPVSDQAM
   8 ...MRITSQLICQAADDLNGFVGLNRKTGQYIVRFSEDSFGMDVADDGIIPCSEFVWAPATEQTM


            70        80        90       100         
            |         |         |         |         
   1 RLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR...
   2 VLCRERLSLLLDQHVDDRLNIGEPLRAYLRRCDLPEIVAQRSLQqht
   3 ALCRERLSLLLDQHVDDRLNIGEPLRAYLRRCDLPEIVAQRSLQqrt
   4 RLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR...
   5 ALCRERLALLFGQHVDDRLNIGEPLRLYLRRTDLPEIVAERSPItr.
   6 RLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR...
   7 SLKREQIQLLLDQNIDDRINISEPLRVYMRRSDLPEIQAVRSLLstt
   8 TLKRELIQLLLDQNIDDRINITEPLRVYMNKREVPEIEAVRSLVkg.