# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vemA 516 4.52e-01 1vkuA 100 1.29e+00 a.28.1.1 108690 1xcbA 211 1.38e+00 a.4.5.38,c.2.1.12 109552,109553 1v4pA 157 2.98e+00 1g5bA 221 3.82e+00 1g5bA d.159.1.3 60261 1t2bA 397 4.52e+00 1nmoA 247 4.97e+00 c.135.1.1 91980 2cb2A 318 5.28e+00 1j09A 468 6.21e+00 a.97.1.1,c.26.1.1 77025,77026 2gfaA 119 7.37e+00 1q15A 503 8.04e+00 c.26.2.1,d.153.1.1 95538,95539 1yc9A 442 8.89e+00 1kshA 186 1.01e+01 c.37.1.8 72914 1oyjA 231 1.02e+01 a.45.1.1,c.47.1.5 87597,87598 2ew0A 192 1.02e+01 1ig5A 75 1.06e+01 4icb a.39.1.1 62363 1upvA 257 1.30e+01 1b35B 255 1.34e+01 1b35B b.121.4.1 23334 1seiA 130 1.40e+01 1seiA d.140.1.1 41463 1din 236 1.42e+01 1din c.69.1.9 34682 1zy4A 303 1.52e+01 1xo1A 291 1.53e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 2bkdN 134 1.68e+01 1jlyA 304 1.80e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1rcqA 357 1.81e+01 b.49.2.2,c.1.6.1 104882,104883 1weoA 93 1.84e+01 1r9fA 136 1.86e+01 d.255.1.1 97257 1ywnA 316 1.95e+01 2ag4A 164 2.06e+01 1yewC 289 2.11e+01 1zi8A 236 2.11e+01 1h1yA 228 2.26e+01 c.1.2.2 76506 1z57A 339 2.32e+01 1a4pA 96 2.38e+01 1b4cA a.39.1.2 17176 1xs1A 193 2.45e+01 1tfzA 424 2.50e+01 d.32.1.3,d.32.1.3 106886,106887 1umqA 81 2.78e+01 a.4.1.12 99625 1t3qB 788 2.89e+01 d.41.1.1,d.133.1.1 106369,106370 1pzlA 237 3.18e+01 a.123.1.1 104393 1q5dA 419 3.29e+01 a.104.1.1 95891 1ijxA 127 3.30e+01 1ijxA a.141.1.1 62511 2ch8A 201 3.33e+01 1wjxA 122 3.40e+01 2brcA 214 3.41e+01 1twfC 318 3.42e+01 2f1kA 279 3.67e+01 2fmlA 273 3.84e+01 1pvaA 110 3.94e+01 1a75A a.39.1.4 17207 1b43A 340 4.02e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1sseB 86 4.03e+01 2gu3A 136 4.07e+01 1x47A 98 4.10e+01 1e5pA 151 4.22e+01 1bj7 b.60.1.1 59272 1cczA 171 4.28e+01 1cczA b.1.1.1,b.1.1.3 19758,21683 1j55A 95 4.49e+01 a.39.1.2 77078 2cn3A 737 4.60e+01 1sr2A 116 4.61e+01 1dd9A 338 4.77e+01 1dd9A e.13.1.1 43254 1r85A 379 4.81e+01 c.1.8.3 104839 1yyaA 250 4.85e+01 1t5bA 201 4.89e+01 c.23.5.3 106433 1bb8 71 5.00e+01 2bb8 d.10.1.1 37478 1e6yB 433 5.01e+01 1mroB a.89.1.1,d.58.31.2 18535,39453 1awd 94 5.20e+01 1awd d.15.4.1 37673 1to4A 156 5.55e+01 b.1.8.1 107162 2trxA 108 5.59e+01 1thx c.47.1.1 32719 1gtmA 419 5.67e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1smbA 154 5.73e+01 d.111.1.1 105756 1y6uA 70 5.75e+01 1h65A 270 5.75e+01 c.37.1.8 65640 1ssqA 267 5.85e+01 b.81.1.6 105993 1nhcA 336 5.85e+01 b.80.1.3 91879 1x6iA 91 5.95e+01 1ykhB 132 5.98e+01 2an9A 207 6.13e+01 1sgmA 191 6.24e+01 a.4.1.9,a.121.1.1 105537,105538 1s5pA 235 6.26e+01 c.31.1.5 98569 1t06A 235 6.42e+01 a.118.1.17 106194 2ct7A 86 6.62e+01 1ybzA 91 6.70e+01 1jx4A 352 6.82e+01 d.240.1.1,e.8.1.7 90378,90379 1epfA 191 6.84e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1wwiA 148 6.91e+01 1kutA 230 6.94e+01 d.143.1.1 73017 2dalA 62 7.19e+01 5pal 109 7.21e+01 1a75A a.39.1.4 17215 1z84A 351 7.22e+01 1sddA 306 7.32e+01 b.6.1.3,b.6.1.3 105431,105432 1i5nA 146 7.41e+01 1i5nA a.24.10.3 61805 1pw4A 451 7.45e+01 f.38.1.1 95198 1n83A 270 7.47e+01 a.123.1.1 80276 1klxA 138 7.60e+01 a.118.18.1 77440 2fu2A 102 7.66e+01 1uw4A 91 7.67e+01 d.58.7.4 100071 1f6bA 198 7.79e+01 c.37.1.8 64986 1m45B 25 7.83e+01 1go3F 107 7.84e+01 a.60.8.2 65407 1wmhA 89 7.84e+01 1vaxA 287 7.89e+01 1zejA 293 7.96e+01 1ji7A 89 8.06e+01 a.60.1.1 71682 1vjeA 166 8.23e+01 d.185.1.2 100807 1lq8B 31 8.31e+01 1yj7A 171 8.33e+01 1zbpA 273 8.36e+01 1mpgA 282 8.43e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 2aj6A 159 8.50e+01 1wp5A 323 8.65e+01 1l8aA 886 8.76e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2g1uA 155 8.77e+01 1vp7A 100 8.85e+01