# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1din 236 6.36e-01 1din c.69.1.9 34682 2f1kA 279 7.27e-01 1zi8A 236 1.07e+00 1vemA 516 1.56e+00 2cb2A 318 1.70e+00 1wjxA 122 2.25e+00 2cbuA 468 2.98e+00 1kshA 186 4.86e+00 c.37.1.8 72914 2brcA 214 9.80e+00 2fsrA 195 1.15e+01 2b20A 403 1.23e+01 1at0 145 1.36e+01 1at0 b.86.1.1 28374 1csn 298 1.51e+01 1csn d.144.1.7 41664 1ywnA 316 1.67e+01 1o7iA 119 1.73e+01 b.40.4.3 86642 1dkuA 317 1.82e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 2agyA 361 1.89e+01 1q15A 503 2.01e+01 c.26.2.1,d.153.1.1 95538,95539 1iicA 422 2.01e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1k0wA 231 2.02e+01 c.74.1.1 77220 1em2A 229 2.11e+01 1em2A d.129.3.2 41321 2c1iA 431 2.15e+01 1yyaA 250 2.15e+01 1vjeA 166 2.16e+01 d.185.1.2 100807 1jlyA 304 2.17e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 2dcyA 185 2.23e+01 1nlfA 279 2.37e+01 c.37.1.11 85850 1yvhA 329 2.39e+01 1b35B 255 2.48e+01 1b35B b.121.4.1 23334 1voqa 90 2.55e+01 2ag4A 164 2.60e+01 1crzA 403 2.61e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 2fm8A 135 2.65e+01 1xcbA 211 2.76e+01 a.4.5.38,c.2.1.12 109552,109553 1qmeA 702 2.97e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1ig5A 75 2.97e+01 4icb a.39.1.1 62363 1uw4A 91 2.98e+01 d.58.7.4 100071 1xs1A 193 3.12e+01 1w9yA 319 3.13e+01 1wzvA 155 3.24e+01 1nar 290 3.29e+01 1nar c.1.8.5 28988 1mg4A 113 3.38e+01 d.15.11.1 84953 1m22A 503 3.55e+01 c.117.1.1 78464 1o17A 345 3.69e+01 a.46.2.1,c.27.1.1 80765,80766 1pl4A 198 3.71e+01 a.2.11.1,d.44.1.1 94854,94855 1v4pA 157 3.73e+01 1obdA 306 3.91e+01 d.143.1.1 86767 1q0eA 152 4.12e+01 b.1.8.1 95504 1rcqA 357 4.20e+01 b.49.2.2,c.1.6.1 104882,104883 1rypF 233 4.28e+01 1rypF d.153.1.4 41937 2gfaA 119 4.30e+01 2cnqA 306 4.32e+01 2trxA 108 4.46e+01 1thx c.47.1.1 32719 1d8wA 426 4.60e+01 1de5A c.1.15.2 29394 1oo0A 147 4.61e+01 d.232.1.1 87182 1r29A 127 4.62e+01 d.42.1.1 96856 1f3uA 118 4.77e+01 1f3uA b.65.1.1 27521 1zt2B 212 4.77e+01 1p4kA 295 4.83e+01 d.153.1.5 87772 1r9fA 136 4.98e+01 d.255.1.1 97257 1rypD 241 5.00e+01 1rypD d.153.1.4 41935 1y93A 159 5.09e+01 1hyhA 309 5.25e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 2f0aA 98 5.32e+01 1f9zA 135 5.35e+01 1qipA d.32.1.1 38484 1xahA 354 5.37e+01 1g5bA 221 5.39e+01 1g5bA d.159.1.3 60261 1to4A 156 5.50e+01 b.1.8.1 107162 1j55A 95 5.56e+01 a.39.1.2 77078 3fib 249 5.67e+01 3fib d.171.1.1 42455 1suuA 312 5.70e+01 b.68.10.1 99006 1f35A 162 5.79e+01 1f35A b.94.1.1 59628 2bj0A 203 5.95e+01 1nmoA 247 5.99e+01 c.135.1.1 91980 2aegA 268 6.14e+01 1mrzA 293 6.26e+01 b.43.5.1,c.26.1.3 91452,91453 2ca6A 386 6.36e+01 1kveB 77 6.40e+01 1kveB 1i3zA 103 6.52e+01 d.93.1.1 83667 1uylA 236 6.64e+01 d.122.1.1 108147 1m40A 263 6.70e+01 e.3.1.1 74437 1krs 120 6.95e+01 1krs b.40.4.1 25256 1pcfA 66 6.95e+01 1pcfA d.18.1.1 38142 2bkdN 134 6.97e+01 1vyiA 112 6.99e+01 2b5iC 199 7.05e+01 1zbpA 273 7.15e+01 1y7wA 291 7.26e+01 1nzyA 269 7.28e+01 1nzyA c.14.1.3 30903 1o4rA 108 7.33e+01 d.93.1.1 92469 1nnsA 326 7.34e+01 c.88.1.1 85910 2fa8A 105 7.42e+01 2gu3A 136 7.50e+01 1x0vA 354 7.52e+01 1p4oA 322 7.63e+01 d.144.1.7 87775 1z8gA 372 7.69e+01 1t2jA 116 7.86e+01 1zyiA 171 7.95e+01 1mo9A 523 8.12e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1qzgA 187 8.17e+01 b.40.4.3 96643 1sddA 306 8.19e+01 b.6.1.3,b.6.1.3 105431,105432 1qy6A 274 8.44e+01 b.47.1.1 96574 1weoA 93 8.45e+01 1xypA 190 8.50e+01 1axkA b.29.1.11 24327 1o50A 157 8.51e+01 d.37.1.1,d.37.1.1 92478,92479 1qfxA 460 8.58e+01 1qfxA c.60.1.2 33994 2cx5A 158 8.60e+01 2ey4C 82 8.76e+01 1awd 94 8.91e+01 1awd d.15.4.1 37673 1nqkA 381 8.95e+01 c.1.16.4 92050 1mr7A 209 8.99e+01 b.81.1.3 91430