# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vemA 516 1.21e-01 1itcA 516 1.21e-01 b.3.1.1,c.1.8.1 83705,83706 2cb2A 318 9.72e-01 1xcbA 211 1.43e+00 a.4.5.38,c.2.1.12 109552,109553 1vkuA 100 2.10e+00 a.28.1.1 108690 1htjF 210 2.43e+00 1htjF a.91.1.1 61254 1g5bA 221 2.89e+00 1g5bA d.159.1.3 60261 1t2bA 397 2.98e+00 2aclB 244 3.82e+00 1kshA 186 5.13e+00 c.37.1.8 72914 1din 236 5.33e+00 1din c.69.1.9 34682 1zbpA 273 6.52e+00 1j09A 468 6.52e+00 a.97.1.1,c.26.1.1 77025,77026 1ig5A 75 8.56e+00 4icb a.39.1.1 62363 4icb 76 8.61e+00 4icb a.39.1.1 17145 1upvA 257 8.73e+00 1zi8A 236 8.87e+00 1gln 468 1.01e+01 1gln a.97.1.1,c.26.1.1 18752,31588 1oyjA 231 1.01e+01 a.45.1.1,c.47.1.5 87597,87598 1z57A 339 1.07e+01 1a4pA 96 1.08e+01 1b4cA a.39.1.2 17176 2bkdN 134 1.11e+01 1nmoA 247 1.25e+01 c.135.1.1 91980 1e5pA 151 1.28e+01 1bj7 b.60.1.1 59272 2gtrA 261 1.31e+01 1i5nA 146 1.38e+01 1i5nA a.24.10.3 61805 1yyaA 250 1.49e+01 1tfzA 424 1.65e+01 d.32.1.3,d.32.1.3 106886,106887 1pq9A 253 1.68e+01 a.123.1.1 95004 1q15A 503 1.68e+01 c.26.2.1,d.153.1.1 95538,95539 2fw2A 260 1.98e+01 1smbA 154 2.01e+01 d.111.1.1 105756 1xo1A 291 2.01e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1r29A 127 2.15e+01 d.42.1.1 96856 2fbmA 291 2.24e+01 2gfaA 119 2.28e+01 1j55A 95 2.29e+01 a.39.1.2 77078 2ew0A 192 2.30e+01 1b35B 255 2.38e+01 1b35B b.121.4.1 23334 1h1yA 228 2.39e+01 c.1.2.2 76506 1k8tA 510 2.40e+01 e.41.1.1 68316 2f1kA 279 2.50e+01 1xfuA 747 2.93e+01 2b7oA 464 2.94e+01 1gtmA 419 2.97e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 2agaA 190 3.11e+01 1w34A 304 3.15e+01 1t5bA 201 3.22e+01 c.23.5.3 106433 1ut8A 291 3.23e+01 a.60.7.1,c.120.1.2 99908,99909 2a19B 284 3.34e+01 1jlyA 304 3.49e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1v4pA 157 3.50e+01 2c1gA 431 3.50e+01 1go2A 304 3.51e+01 b.43.4.2,c.25.1.1 76243,76244 2breA 219 3.79e+01 1to4A 156 4.00e+01 b.1.8.1 107162 1h65A 270 4.04e+01 c.37.1.8 65640 1rcqA 357 4.09e+01 b.49.2.2,c.1.6.1 104882,104883 1yc9A 442 4.12e+01 1t06A 235 4.14e+01 a.118.1.17 106194 2bgkA 278 4.22e+01 1weoA 93 4.70e+01 1zy4A 303 4.71e+01 2brcA 214 4.73e+01 1irsA 112 4.77e+01 1qqgA b.55.1.2 26991 1ycqA 107 4.79e+01 1ycqA a.42.1.1 17419 1xfxA 777 4.82e+01 1uv4A 293 4.89e+01 1sr2A 116 4.93e+01 1ihnA 113 4.97e+01 1ihnA c.103.1.1 62388 1fj2A 232 5.04e+01 1auoA c.69.1.14 34720 1b43A 340 5.12e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1e9pA 151 5.14e+01 1mfmA b.1.8.1 22215 1vjrA 271 5.25e+01 c.108.1.14 100832 2basA 431 5.26e+01 1ogiA 303 5.28e+01 b.43.4.2,c.25.1.1 92914,92915 2bsaA 303 5.30e+01 1cbjA 151 5.44e+01 1mfmA b.1.8.1 22213 1yzbA 182 5.46e+01 1pw4A 451 5.49e+01 f.38.1.1 95198 1bj7 156 5.50e+01 1bj7 b.60.1.1 27113 1q0eA 152 5.51e+01 b.1.8.1 95504 1que 303 5.72e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1r9fA 136 5.79e+01 d.255.1.1 97257 1qqyA 130 5.85e+01 3lzt d.2.1.2 36586 1o70A 324 5.92e+01 b.118.1.1,b.118.1.1 81115,81116 1e6yB 433 6.02e+01 1mroB a.89.1.1,d.58.31.2 18535,39453 2fmlA 273 6.04e+01 1vaxA 287 6.07e+01 1xezA 721 6.17e+01 2f4mA 295 6.18e+01 1dd9A 338 6.28e+01 1dd9A e.13.1.1 43254 2aneA 125 6.30e+01 1v9mA 323 6.54e+01 f.40.1.1 100543 1ve6A 582 6.77e+01 1g13A 162 6.80e+01 1g13A b.95.1.1 60194 1s5pA 235 6.86e+01 c.31.1.5 98569 1hskA 326 6.87e+01 2mbr d.145.1.2,d.146.1.1 61241,61242 1ymmB 198 6.93e+01 1yfsA 465 6.99e+01 1y3tA 337 7.02e+01 1zejA 293 7.03e+01 1ijxA 127 7.17e+01 1ijxA a.141.1.1 62511 1r5zA 323 7.27e+01 f.40.1.1 97135 1cczA 171 7.31e+01 1cczA b.1.1.1,b.1.1.3 19758,21683 2agyA 361 7.37e+01 1uurA 473 7.37e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1zd9A 188 7.51e+01 1x6iA 91 7.52e+01 1aerA 205 7.56e+01 1aerA d.166.1.1 42249 1zgsA 447 7.63e+01 1ssqA 267 7.64e+01 b.81.1.6 105993 1q5dA 419 7.69e+01 a.104.1.1 95891 1x3pA 54 7.76e+01 1v02A 565 7.77e+01 c.1.8.4 108194 1y1uA 585 7.92e+01 1hziA 129 8.00e+01 1rcb a.26.1.2 61449 2fi9A 128 8.07e+01 1n83A 270 8.08e+01 a.123.1.1 80276 1ah6 220 8.12e+01 1yer d.122.1.1 41094 2akzA 439 8.23e+01 1wzvA 155 8.30e+01 1riqA 465 8.35e+01 a.203.1.1,d.104.1.1 97516,97517 1rcb 129 8.36e+01 1rcb a.26.1.2 16854 1f6bA 198 8.37e+01 c.37.1.8 64986 1lci 550 8.38e+01 1lci e.23.1.1 43349 1p3wA 404 8.54e+01 c.67.1.3 87752 2cblA 305 8.56e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1e55A 512 8.57e+01 1e70M c.1.8.4 28934 2cxxA 190 8.60e+01 1m22A 503 8.70e+01 c.117.1.1 78464 1of5B 184 8.73e+01 d.17.4.2 86934 1x0vA 354 8.87e+01 1ab4 477 8.93e+01 1ab4 e.11.1.1 43251