# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vemA 516 8.25e-01 1kshA 186 1.05e+00 c.37.1.8 72914 1itcA 516 1.13e+00 b.3.1.1,c.1.8.1 83705,83706 2f1kA 279 1.53e+00 1din 236 2.26e+00 1din c.69.1.9 34682 2cb2A 318 2.52e+00 1zi8A 236 2.74e+00 1o17A 345 3.56e+00 a.46.2.1,c.27.1.1 80765,80766 1wjxA 122 5.25e+00 1o7iA 119 6.70e+00 b.40.4.3 86642 1j1hA 144 9.26e+00 b.111.1.1 77056 1oo0A 147 9.52e+00 d.232.1.1 87182 2agyA 361 1.02e+01 2cblA 305 1.15e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1yvhA 329 1.22e+01 1nzyA 269 1.24e+01 1nzyA c.14.1.3 30903 1l2uA 245 1.33e+01 c.1.2.3 73516 1jftA 340 1.39e+01 a.35.1.5,c.93.1.1 66652,66653 1uw4A 91 1.40e+01 d.58.7.4 100071 1dbqA 289 1.42e+01 1qpzA c.93.1.1 35666 1w3jA 468 1.45e+01 c.1.8.4 109156 2cbuA 468 1.71e+01 1jlyA 304 1.71e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1zd9A 188 1.85e+01 1y1uA 585 1.89e+01 1azo 232 1.89e+01 1azo c.52.1.14 33329 1f6bA 198 1.93e+01 c.37.1.8 64986 2a5dA 175 1.95e+01 4icb 76 2.10e+01 4icb a.39.1.1 17145 1rpyA 114 2.12e+01 d.93.1.1 97718 1q15A 503 2.21e+01 c.26.2.1,d.153.1.1 95538,95539 1iicA 422 2.25e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1rypD 241 2.37e+01 1rypD d.153.1.4 41935 1k0wA 231 2.41e+01 c.74.1.1 77220 1b35B 255 2.43e+01 1b35B b.121.4.1 23334 2fsrA 195 2.53e+01 1btl 263 2.61e+01 1btl e.3.1.1 42691 1q0eA 152 2.65e+01 b.1.8.1 95504 1cbjA 151 2.66e+01 1mfmA b.1.8.1 22213 1pbgA 468 2.71e+01 1e70M c.1.8.4 28946 1ig5A 75 2.72e+01 4icb a.39.1.1 62363 2agcA 162 2.75e+01 1irsA 112 3.14e+01 1qqgA b.55.1.2 26991 1ghpA 258 3.20e+01 1btl e.3.1.1 60520 1fa8A 135 3.21e+01 1qipA d.32.1.1 38486 1f9zA 135 3.37e+01 1qipA d.32.1.1 38484 1at0 145 3.41e+01 1at0 b.86.1.1 28374 1obdA 306 3.48e+01 d.143.1.1 86767 1pl4A 198 3.64e+01 a.2.11.1,d.44.1.1 94854,94855 1ap6A 198 3.66e+01 1avmA a.2.11.1,d.44.1.1 15746,38705 1f3uA 118 3.66e+01 1f3uA b.65.1.1 27521 2trxA 108 3.67e+01 1thx c.47.1.1 32719 1m40A 263 3.70e+01 e.3.1.1 74437 1d8wA 426 3.70e+01 1de5A c.1.15.2 29394 2b20A 403 3.71e+01 1mg4A 113 3.72e+01 d.15.11.1 84953 1n0nA 199 3.74e+01 a.2.11.1,d.44.1.1 79750,79751 2ax4A 198 3.80e+01 2fm8A 135 3.91e+01 1ermA 263 3.95e+01 1btl e.3.1.1 42690 1zbpA 273 3.97e+01 1m22A 503 3.99e+01 c.117.1.1 78464 1iq4A 179 4.01e+01 1iq4A d.77.1.1 62641 1i3zA 103 4.10e+01 d.93.1.1 83667 1e9pA 151 4.10e+01 1mfmA b.1.8.1 22215 1q0xH 221 4.11e+01 b.1.1.1,b.1.1.2 95517,95518 1wzvA 155 4.14e+01 1o3yA 166 4.15e+01 c.37.1.8 86618 1g2iA 166 4.17e+01 1g2iA c.23.16.2 31438 1g8yA 279 4.21e+01 1g8yA c.37.1.11 32302 1y80A 210 4.24e+01 1sqsA 242 4.24e+01 c.23.5.5 98968 2gfaA 119 4.27e+01 2b5iC 199 4.35e+01 1sy6A 204 4.35e+01 b.1.1.4,b.1.1.4 106111,106112 1s48A 609 4.36e+01 e.8.1.4 98475 1uz1A 468 4.40e+01 1bbpA 173 4.63e+01 1bbpA b.60.1.1 27147 1a48 306 4.65e+01 1a48 d.143.1.1 41590 1ifrA 121 4.76e+01 b.1.16.1 71203 2cx5A 158 4.85e+01 2fepA 289 4.90e+01 1f35A 162 4.93e+01 1f35A b.94.1.1 59628 1bb8 71 4.99e+01 2bb8 d.10.1.1 37478 1csn 298 5.04e+01 1csn d.144.1.7 41664 1lv7A 257 5.13e+01 c.37.1.20 78232 1nlfA 279 5.19e+01 c.37.1.11 85850 1krs 120 5.19e+01 1krs b.40.4.1 25256 1to4A 156 5.29e+01 b.1.8.1 107162 1k8tA 510 5.34e+01 e.41.1.1 68316 1o7fA 469 5.34e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1byqA 228 5.34e+01 1yer d.122.1.1 41100 2cnqA 306 5.36e+01 1kveB 77 5.53e+01 1kveB 1ejxC 567 5.58e+01 b.92.1.1,c.1.9.2 83184,83185 1o59A 355 5.62e+01 b.18.1.22,b.18.1.22 92495,92496 1uylA 236 5.68e+01 d.122.1.1 108147 1uurA 473 5.83e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1wcgA 464 6.05e+01 2dcyA 185 6.09e+01 1n2sA 299 6.21e+01 c.2.1.2 79857 1xxnA 185 6.26e+01 1xnb 185 6.28e+01 1axkA b.29.1.11 24308 1mg7A 417 6.34e+01 d.14.1.6,d.58.26.6 84954,84955 1f60A 458 6.48e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1shbA 104 6.49e+01 1fmk d.93.1.1 40425 1ir6A 424 6.55e+01 c.107.1.2 71342 2acaA 189 6.58e+01 1aerA 205 6.63e+01 1aerA d.166.1.1 42249 1zm8A 259 6.71e+01 1g5bA 221 6.95e+01 1g5bA d.159.1.3 60261 1o4rA 108 7.02e+01 d.93.1.1 92469 1k92A 455 7.05e+01 c.26.2.1,d.210.1.1 68325,68326 2gwnA 452 7.11e+01 1d2eA 397 7.13e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1gpr 162 7.13e+01 1gpr b.84.3.1 28267 1vg5A 73 7.17e+01 1qfxA 460 7.19e+01 1qfxA c.60.1.2 33994 2cr4A 126 7.22e+01 1cf2O 337 7.28e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1t8hA 277 7.31e+01 d.194.1.2 106664 1jmcA 246 7.32e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1yzbA 182 7.40e+01 1w2fA 276 7.44e+01 d.143.1.3 109125 1xniA 118 7.44e+01 1ieaA 192 7.50e+01 1iakA b.1.1.2,d.19.1.1 21631,38205 1qzgA 187 7.68e+01 b.40.4.3 96643 1em2A 229 7.90e+01 1em2A d.129.3.2 41321 1yadA 221 7.93e+01 1r7mA 235 7.99e+01 1yrbA 262 8.11e+01 1voqa 90 8.24e+01 2ey4C 82 8.28e+01 2aegA 268 8.33e+01 2c1iA 431 8.40e+01 1e44B 96 8.45e+01 1e44B b.101.1.1 59220 1rypJ 204 8.47e+01 d.153.1.4 41878 5reqA 727 8.62e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 1u24A 337 8.69e+01 1mr3F 181 8.74e+01 c.37.1.8 79422 3fib 249 8.84e+01 3fib d.171.1.1 42455 1ah6 220 8.87e+01 1yer d.122.1.1 41094