/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0313.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0313.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0313/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h58A/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174946967 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 4.5953 sec, elapsed time= 4.65193 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 4.65929 sec, elapsed time= 4.72952 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0313 numbered 1 through 322 Created new target T0313 from T0313.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2h58A expands to /projects/compbio/data/pdb/2h58.pdb.gz 2h58A:Skipped atom 440, because occupancy 5.0000000e-01 <= existing 0.500 in 2h58A Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 452, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 506, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 510, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 512, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 514, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 516, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 518, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1116, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1120, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1122, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1124, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1126, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1128, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1456, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1460, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1462, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1464, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1466, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1468, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1470, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1591, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1595, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1597, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1599, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1601, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1603, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1605, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1607, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1676, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1680, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1682, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1684, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1686, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1688, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1690, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1692, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1854, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1858, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1860, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1862, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1864, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1866, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1868, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1870, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1901, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1905, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1907, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1909, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1911, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1980, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1984, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 1986, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2094, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2098, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2100, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2102, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2104, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2106, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2108, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2136, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2140, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2142, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2144, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2146, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2148, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2150, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2152, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2163, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2167, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2169, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2361, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2365, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2367, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2369, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2371, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2373, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2481, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2485, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2487, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2489, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2491, because occupancy 0.500 <= existing 0.500 in 2h58A Skipped atom 2493, because occupancy 0.500 <= existing 0.500 in 2h58A Read 316 residues and 2429 atoms. # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 6.578 sec, elapsed time= 6.68805 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 307 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -76.9778 # GDT_score(maxd=8,maxw=2.9)= -77.9307 # GDT_score(maxd=8,maxw=3.2)= -75.6967 # GDT_score(maxd=8,maxw=3.5)= -73.3266 # GDT_score(maxd=10,maxw=3.8)= -75.6083 # GDT_score(maxd=10,maxw=4)= -74.018 # GDT_score(maxd=10,maxw=4.2)= -72.3778 # GDT_score(maxd=12,maxw=4.3)= -75.2843 # GDT_score(maxd=12,maxw=4.5)= -73.6623 # GDT_score(maxd=12,maxw=4.7)= -71.9965 # GDT_score(maxd=14,maxw=5.2)= -70.8962 # GDT_score(maxd=14,maxw=5.5)= -68.3202 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 3693.000 rmsd (weighted)= 4.014 (unweighted)= 13.610 superimposing iter= 1 total_weight= 11289.329 rmsd (weighted)= 1.474 (unweighted)= 13.640 superimposing iter= 2 total_weight= 6957.689 rmsd (weighted)= 0.797 (unweighted)= 13.673 superimposing iter= 3 total_weight= 4319.119 rmsd (weighted)= 0.578 (unweighted)= 13.688 superimposing iter= 4 total_weight= 3183.036 rmsd (weighted)= 0.496 (unweighted)= 13.695 superimposing iter= 5 total_weight= 2730.455 rmsd (weighted)= 0.463 (unweighted)= 13.697 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2137427404.pdb -s /var/tmp/to_scwrl_2137427404.seq -o /var/tmp/from_scwrl_2137427404.pdb > /var/tmp/scwrl_2137427404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2137427404.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -77.1361 # GDT_score(maxd=8,maxw=2.9)= -77.7088 # GDT_score(maxd=8,maxw=3.2)= -75.7168 # GDT_score(maxd=8,maxw=3.5)= -73.5699 # GDT_score(maxd=10,maxw=3.8)= -75.7508 # GDT_score(maxd=10,maxw=4)= -74.2402 # GDT_score(maxd=10,maxw=4.2)= -72.6939 # GDT_score(maxd=12,maxw=4.3)= -75.4588 # GDT_score(maxd=12,maxw=4.5)= -73.9344 # GDT_score(maxd=12,maxw=4.7)= -72.3874 # GDT_score(maxd=14,maxw=5.2)= -71.4409 # GDT_score(maxd=14,maxw=5.5)= -69.027 # command:# request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1495235745.pdb -s /var/tmp/to_scwrl_1495235745.seq -o /var/tmp/from_scwrl_1495235745.pdb > /var/tmp/scwrl_1495235745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1495235745.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -76.7405 # GDT_score(maxd=8,maxw=2.9)= -78.0659 # GDT_score(maxd=8,maxw=3.2)= -75.8311 # GDT_score(maxd=8,maxw=3.5)= -73.4106 # GDT_score(maxd=10,maxw=3.8)= -75.6756 # GDT_score(maxd=10,maxw=4)= -74.0533 # GDT_score(maxd=10,maxw=4.2)= -72.3863 # GDT_score(maxd=12,maxw=4.3)= -75.3001 # GDT_score(maxd=12,maxw=4.5)= -73.6512 # GDT_score(maxd=12,maxw=4.7)= -71.9408 # GDT_score(maxd=14,maxw=5.2)= -70.8018 # GDT_score(maxd=14,maxw=5.5)= -68.208 # command:# request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_295941422.pdb -s /var/tmp/to_scwrl_295941422.seq -o /var/tmp/from_scwrl_295941422.pdb > /var/tmp/scwrl_295941422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295941422.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -76.7405 # GDT_score(maxd=8,maxw=2.9)= -78.9398 # GDT_score(maxd=8,maxw=3.2)= -76.1009 # GDT_score(maxd=8,maxw=3.5)= -73.1918 # GDT_score(maxd=10,maxw=3.8)= -75.4147 # GDT_score(maxd=10,maxw=4)= -73.4866 # GDT_score(maxd=10,maxw=4.2)= -71.521 # GDT_score(maxd=12,maxw=4.3)= -74.7386 # GDT_score(maxd=12,maxw=4.5)= -72.8183 # GDT_score(maxd=12,maxw=4.7)= -70.9015 # GDT_score(maxd=14,maxw=5.2)= -69.6558 # GDT_score(maxd=14,maxw=5.5)= -66.9244 # command:# request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_137600857.pdb -s /var/tmp/to_scwrl_137600857.seq -o /var/tmp/from_scwrl_137600857.pdb > /var/tmp/scwrl_137600857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_137600857.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -77.2152 # GDT_score(maxd=8,maxw=2.9)= -79.3532 # GDT_score(maxd=8,maxw=3.2)= -76.5553 # GDT_score(maxd=8,maxw=3.5)= -73.6759 # GDT_score(maxd=10,maxw=3.8)= -75.8881 # GDT_score(maxd=10,maxw=4)= -73.9816 # GDT_score(maxd=10,maxw=4.2)= -72.0085 # GDT_score(maxd=12,maxw=4.3)= -75.2095 # GDT_score(maxd=12,maxw=4.5)= -73.2737 # GDT_score(maxd=12,maxw=4.7)= -71.3224 # GDT_score(maxd=14,maxw=5.2)= -69.9758 # GDT_score(maxd=14,maxw=5.5)= -67.161 # command:# request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_878973329.pdb -s /var/tmp/to_scwrl_878973329.seq -o /var/tmp/from_scwrl_878973329.pdb > /var/tmp/scwrl_878973329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_878973329.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0313.try1-opt2.pdb looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -77.2152 # GDT_score(maxd=8,maxw=2.9)= -79.3479 # GDT_score(maxd=8,maxw=3.2)= -76.5482 # GDT_score(maxd=8,maxw=3.5)= -73.6685 # GDT_score(maxd=10,maxw=3.8)= -75.8813 # GDT_score(maxd=10,maxw=4)= -73.9704 # GDT_score(maxd=10,maxw=4.2)= -71.9987 # GDT_score(maxd=12,maxw=4.3)= -75.1992 # GDT_score(maxd=12,maxw=4.5)= -73.2636 # GDT_score(maxd=12,maxw=4.7)= -71.313 # GDT_score(maxd=14,maxw=5.2)= -69.9669 # GDT_score(maxd=14,maxw=5.5)= -67.1528 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 3693.000 rmsd (weighted)= 3.905 (unweighted)= 13.147 superimposing iter= 1 total_weight= 13929.840 rmsd (weighted)= 1.324 (unweighted)= 13.201 superimposing iter= 2 total_weight= 6628.732 rmsd (weighted)= 0.766 (unweighted)= 13.212 superimposing iter= 3 total_weight= 3701.351 rmsd (weighted)= 0.611 (unweighted)= 13.213 superimposing iter= 4 total_weight= 2826.439 rmsd (weighted)= 0.561 (unweighted)= 13.212 superimposing iter= 5 total_weight= 2540.186 rmsd (weighted)= 0.545 (unweighted)= 13.211 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0313.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0313)I35.C and (T0313)K42.C only 0.000 apart, marking (T0313)K42.C as missing WARNING: atoms too close: (T0313)H36.N and (T0313)P43.N only 0.000 apart, marking (T0313)H36.N as missing WARNING: atoms too close: (T0313)H36.CA and (T0313)P43.CA only 0.000 apart, marking (T0313)H36.CA as missing WARNING: atoms too close: (T0313)Q147.C and (T0313)L150.C only 0.000 apart, marking (T0313)L150.C as missing WARNING: atoms too close: (T0313)E148.N and (T0313)E151.N only 0.000 apart, marking (T0313)E148.N as missing WARNING: atoms too close: (T0313)E148.CA and (T0313)E151.CA only 0.000 apart, marking (T0313)E148.CA as missing WARNING: atoms too close: (T0313)R246.C and (T0313)I253.C only 0.000 apart, marking (T0313)I253.C as missing WARNING: atoms too close: (T0313)L247.N and (T0313)N254.N only 0.000 apart, marking (T0313)L247.N as missing WARNING: atoms too close: (T0313)L247.CA and (T0313)N254.CA only 0.000 apart, marking (T0313)L247.CA as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.943038 # GDT_score = -74.7627 # GDT_score(maxd=8,maxw=2.9)= -76.8932 # GDT_score(maxd=8,maxw=3.2)= -74.2282 # GDT_score(maxd=8,maxw=3.5)= -71.473 # GDT_score(maxd=10,maxw=3.8)= -73.4551 # GDT_score(maxd=10,maxw=4)= -71.6214 # GDT_score(maxd=10,maxw=4.2)= -69.7724 # GDT_score(maxd=12,maxw=4.3)= -72.6571 # GDT_score(maxd=12,maxw=4.5)= -70.8452 # GDT_score(maxd=12,maxw=4.7)= -68.9909 # GDT_score(maxd=14,maxw=5.2)= -67.6328 # GDT_score(maxd=14,maxw=5.5)= -64.9218 # command:# ReadConformPDB reading from PDB file T0313.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0313)V115.C and (T0313)E117.C only 0.000 apart, marking (T0313)E117.C as missing WARNING: atoms too close: (T0313)Q116.N and (T0313)K118.N only 0.000 apart, marking (T0313)Q116.N as missing WARNING: atoms too close: (T0313)Q116.CA and (T0313)K118.CA only 0.000 apart, marking (T0313)Q116.CA as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.962025 # GDT_score = -68.038 # GDT_score(maxd=8,maxw=2.9)= -69.2108 # GDT_score(maxd=8,maxw=3.2)= -66.6285 # GDT_score(maxd=8,maxw=3.5)= -64.1431 # GDT_score(maxd=10,maxw=3.8)= -66.8813 # GDT_score(maxd=10,maxw=4)= -65.1538 # GDT_score(maxd=10,maxw=4.2)= -63.4638 # GDT_score(maxd=12,maxw=4.3)= -66.7229 # GDT_score(maxd=12,maxw=4.5)= -65.0446 # GDT_score(maxd=12,maxw=4.7)= -63.3504 # GDT_score(maxd=14,maxw=5.2)= -62.5312 # GDT_score(maxd=14,maxw=5.5)= -60.0927 # command:# ReadConformPDB reading from PDB file T0313.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0313)I35.C and (T0313)H39.C only 0.000 apart, marking (T0313)H39.C as missing WARNING: atoms too close: (T0313)H36.N and (T0313)K40.N only 0.000 apart, marking (T0313)H36.N as missing WARNING: atoms too close: (T0313)H36.CA and (T0313)K40.CA only 0.000 apart, marking (T0313)H36.CA as missing WARNING: atoms too close: (T0313)E117.C and (T0313)K118.C only 0.000 apart, marking (T0313)K118.C as missing WARNING: atoms too close: (T0313)K118.N and (T0313)A119.N only 0.000 apart, marking (T0313)K118.N as missing WARNING: atoms too close: (T0313)K118.CA and (T0313)A119.CA only 0.000 apart, marking (T0313)K118.CA as missing WARNING: atoms too close: (T0313)L150.C and (T0313)E151.C only 0.000 apart, marking (T0313)E151.C as missing WARNING: atoms too close: (T0313)E151.N and (T0313)I152.N only 0.000 apart, marking (T0313)E151.N as missing WARNING: atoms too close: (T0313)E151.CA and (T0313)I152.CA only 0.000 apart, marking (T0313)E151.CA as missing WARNING: atoms too close: (T0313)V304.C and (T0313)K306.C only 0.000 apart, marking (T0313)K306.C as missing WARNING: atoms too close: (T0313)E305.N and (T0313)N307.N only 0.000 apart, marking (T0313)E305.N as missing WARNING: atoms too close: (T0313)E305.CA and (T0313)N307.CA only 0.000 apart, marking (T0313)E305.CA as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0313.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0313)Q147.C and (T0313)E151.C only 0.000 apart, marking (T0313)E151.C as missing WARNING: atoms too close: (T0313)E148.N and (T0313)I152.N only 0.000 apart, marking (T0313)E148.N as missing WARNING: atoms too close: (T0313)E148.CA and (T0313)I152.CA only 0.000 apart, marking (T0313)E148.CA as missing WARNING: atoms too close: (T0313)C216.C and (T0313)R221.C only 0.000 apart, marking (T0313)R221.C as missing WARNING: atoms too close: (T0313)S217.N and (T0313)T222.N only 0.000 apart, marking (T0313)S217.N as missing WARNING: atoms too close: (T0313)S217.CA and (T0313)T222.CA only 0.000 apart, marking (T0313)S217.CA as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0313.undertaker-align.pdb looking for model 5 Error: Reading chain from PDB file T0313.undertaker-align.pdb failed. # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0313.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_819907552.pdb -s /var/tmp/to_scwrl_819907552.seq -o /var/tmp/from_scwrl_819907552.pdb > /var/tmp/scwrl_819907552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_819907552.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_42972564.pdb -s /var/tmp/to_scwrl_42972564.seq -o /var/tmp/from_scwrl_42972564.pdb > /var/tmp/scwrl_42972564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_42972564.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_253755580.pdb -s /var/tmp/to_scwrl_253755580.seq -o /var/tmp/from_scwrl_253755580.pdb > /var/tmp/scwrl_253755580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_253755580.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1020129790.pdb -s /var/tmp/to_scwrl_1020129790.seq -o /var/tmp/from_scwrl_1020129790.pdb > /var/tmp/scwrl_1020129790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1020129790.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_301189379.pdb -s /var/tmp/to_scwrl_301189379.seq -o /var/tmp/from_scwrl_301189379.pdb > /var/tmp/scwrl_301189379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_301189379.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_152909581.pdb -s /var/tmp/to_scwrl_152909581.seq -o /var/tmp/from_scwrl_152909581.pdb > /var/tmp/scwrl_152909581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152909581.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_767881854.pdb -s /var/tmp/to_scwrl_767881854.seq -o /var/tmp/from_scwrl_767881854.pdb > /var/tmp/scwrl_767881854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_767881854.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_528437323.pdb -s /var/tmp/to_scwrl_528437323.seq -o /var/tmp/from_scwrl_528437323.pdb > /var/tmp/scwrl_528437323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_528437323.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1129265783.pdb -s /var/tmp/to_scwrl_1129265783.seq -o /var/tmp/from_scwrl_1129265783.pdb > /var/tmp/scwrl_1129265783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1129265783.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1272597419.pdb -s /var/tmp/to_scwrl_1272597419.seq -o /var/tmp/from_scwrl_1272597419.pdb > /var/tmp/scwrl_1272597419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1272597419.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_313886959.pdb -s /var/tmp/to_scwrl_313886959.seq -o /var/tmp/from_scwrl_313886959.pdb > /var/tmp/scwrl_313886959.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_313886959.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_323503357.pdb -s /var/tmp/to_scwrl_323503357.seq -o /var/tmp/from_scwrl_323503357.pdb > /var/tmp/scwrl_323503357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323503357.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_211228966.pdb -s /var/tmp/to_scwrl_211228966.seq -o /var/tmp/from_scwrl_211228966.pdb > /var/tmp/scwrl_211228966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211228966.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2049030672.pdb -s /var/tmp/to_scwrl_2049030672.seq -o /var/tmp/from_scwrl_2049030672.pdb > /var/tmp/scwrl_2049030672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2049030672.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1438070867.pdb -s /var/tmp/to_scwrl_1438070867.seq -o /var/tmp/from_scwrl_1438070867.pdb > /var/tmp/scwrl_1438070867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1438070867.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2101023818.pdb -s /var/tmp/to_scwrl_2101023818.seq -o /var/tmp/from_scwrl_2101023818.pdb > /var/tmp/scwrl_2101023818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2101023818.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1406883405.pdb -s /var/tmp/to_scwrl_1406883405.seq -o /var/tmp/from_scwrl_1406883405.pdb > /var/tmp/scwrl_1406883405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1406883405.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1466777576.pdb -s /var/tmp/to_scwrl_1466777576.seq -o /var/tmp/from_scwrl_1466777576.pdb > /var/tmp/scwrl_1466777576.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1466777576.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_906747931.pdb -s /var/tmp/to_scwrl_906747931.seq -o /var/tmp/from_scwrl_906747931.pdb > /var/tmp/scwrl_906747931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906747931.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_975375832.pdb -s /var/tmp/to_scwrl_975375832.seq -o /var/tmp/from_scwrl_975375832.pdb > /var/tmp/scwrl_975375832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_975375832.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_615423520.pdb -s /var/tmp/to_scwrl_615423520.seq -o /var/tmp/from_scwrl_615423520.pdb > /var/tmp/scwrl_615423520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_615423520.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_383395230.pdb -s /var/tmp/to_scwrl_383395230.seq -o /var/tmp/from_scwrl_383395230.pdb > /var/tmp/scwrl_383395230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_383395230.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1053026786.pdb -s /var/tmp/to_scwrl_1053026786.seq -o /var/tmp/from_scwrl_1053026786.pdb > /var/tmp/scwrl_1053026786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053026786.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_336799898.pdb -s /var/tmp/to_scwrl_336799898.seq -o /var/tmp/from_scwrl_336799898.pdb > /var/tmp/scwrl_336799898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336799898.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1331535890.pdb -s /var/tmp/to_scwrl_1331535890.seq -o /var/tmp/from_scwrl_1331535890.pdb > /var/tmp/scwrl_1331535890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331535890.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1299012990.pdb -s /var/tmp/to_scwrl_1299012990.seq -o /var/tmp/from_scwrl_1299012990.pdb > /var/tmp/scwrl_1299012990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1299012990.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_326743655.pdb -s /var/tmp/to_scwrl_326743655.seq -o /var/tmp/from_scwrl_326743655.pdb > /var/tmp/scwrl_326743655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326743655.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_679287989.pdb -s /var/tmp/to_scwrl_679287989.seq -o /var/tmp/from_scwrl_679287989.pdb > /var/tmp/scwrl_679287989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_679287989.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1594954412.pdb -s /var/tmp/to_scwrl_1594954412.seq -o /var/tmp/from_scwrl_1594954412.pdb > /var/tmp/scwrl_1594954412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1594954412.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_464344512.pdb -s /var/tmp/to_scwrl_464344512.seq -o /var/tmp/from_scwrl_464344512.pdb > /var/tmp/scwrl_464344512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464344512.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1558261317.pdb -s /var/tmp/to_scwrl_1558261317.seq -o /var/tmp/from_scwrl_1558261317.pdb > /var/tmp/scwrl_1558261317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1558261317.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_267378318.pdb -s /var/tmp/to_scwrl_267378318.seq -o /var/tmp/from_scwrl_267378318.pdb > /var/tmp/scwrl_267378318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_267378318.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_507317076.pdb -s /var/tmp/to_scwrl_507317076.seq -o /var/tmp/from_scwrl_507317076.pdb > /var/tmp/scwrl_507317076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_507317076.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1812016898.pdb -s /var/tmp/to_scwrl_1812016898.seq -o /var/tmp/from_scwrl_1812016898.pdb > /var/tmp/scwrl_1812016898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812016898.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1287508107.pdb -s /var/tmp/to_scwrl_1287508107.seq -o /var/tmp/from_scwrl_1287508107.pdb > /var/tmp/scwrl_1287508107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1287508107.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_808506455.pdb -s /var/tmp/to_scwrl_808506455.seq -o /var/tmp/from_scwrl_808506455.pdb > /var/tmp/scwrl_808506455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_808506455.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1964926479.pdb -s /var/tmp/to_scwrl_1964926479.seq -o /var/tmp/from_scwrl_1964926479.pdb > /var/tmp/scwrl_1964926479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964926479.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2055389961.pdb -s /var/tmp/to_scwrl_2055389961.seq -o /var/tmp/from_scwrl_2055389961.pdb > /var/tmp/scwrl_2055389961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2055389961.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1336943778.pdb -s /var/tmp/to_scwrl_1336943778.seq -o /var/tmp/from_scwrl_1336943778.pdb > /var/tmp/scwrl_1336943778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1336943778.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_946708616.pdb -s /var/tmp/to_scwrl_946708616.seq -o /var/tmp/from_scwrl_946708616.pdb > /var/tmp/scwrl_946708616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_946708616.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1180503734.pdb -s /var/tmp/to_scwrl_1180503734.seq -o /var/tmp/from_scwrl_1180503734.pdb > /var/tmp/scwrl_1180503734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1180503734.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1650830737.pdb -s /var/tmp/to_scwrl_1650830737.seq -o /var/tmp/from_scwrl_1650830737.pdb > /var/tmp/scwrl_1650830737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650830737.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1270211973.pdb -s /var/tmp/to_scwrl_1270211973.seq -o /var/tmp/from_scwrl_1270211973.pdb > /var/tmp/scwrl_1270211973.log Error: Couldn't open file /var/tmp/from_scwrl_1270211973.pdb or /var/tmp/from_scwrl_1270211973.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1270211973_b.pdb or decoys//var/tmp/from_scwrl_1270211973_b.pdb.gz for input Trying /var/tmp/from_scwrl_1270211973_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1270211973_b.pdb or /var/tmp/from_scwrl_1270211973_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1270211973_a.pdb or decoys//var/tmp/from_scwrl_1270211973_a.pdb.gz for input Trying /var/tmp/from_scwrl_1270211973_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1270211973_a.pdb or /var/tmp/from_scwrl_1270211973_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1270211973.pdb or /var/tmp/from_scwrl_1270211973_b.pdb or /var/tmp/from_scwrl_1270211973_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1391732700.pdb -s /var/tmp/to_scwrl_1391732700.seq -o /var/tmp/from_scwrl_1391732700.pdb > /var/tmp/scwrl_1391732700.log Error: Couldn't open file /var/tmp/from_scwrl_1391732700.pdb or /var/tmp/from_scwrl_1391732700.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1391732700_b.pdb or decoys//var/tmp/from_scwrl_1391732700_b.pdb.gz for input Trying /var/tmp/from_scwrl_1391732700_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1391732700_b.pdb or /var/tmp/from_scwrl_1391732700_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1391732700_a.pdb or decoys//var/tmp/from_scwrl_1391732700_a.pdb.gz for input Trying /var/tmp/from_scwrl_1391732700_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1391732700_a.pdb or /var/tmp/from_scwrl_1391732700_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1391732700.pdb or /var/tmp/from_scwrl_1391732700_b.pdb or /var/tmp/from_scwrl_1391732700_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1552377762.pdb -s /var/tmp/to_scwrl_1552377762.seq -o /var/tmp/from_scwrl_1552377762.pdb > /var/tmp/scwrl_1552377762.log Error: Couldn't open file /var/tmp/from_scwrl_1552377762.pdb or /var/tmp/from_scwrl_1552377762.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1552377762_b.pdb or decoys//var/tmp/from_scwrl_1552377762_b.pdb.gz for input Trying /var/tmp/from_scwrl_1552377762_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1552377762_b.pdb or /var/tmp/from_scwrl_1552377762_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1552377762_a.pdb or decoys//var/tmp/from_scwrl_1552377762_a.pdb.gz for input Trying /var/tmp/from_scwrl_1552377762_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1552377762_a.pdb or /var/tmp/from_scwrl_1552377762_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1552377762.pdb or /var/tmp/from_scwrl_1552377762_b.pdb or /var/tmp/from_scwrl_1552377762_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_560799194.pdb -s /var/tmp/to_scwrl_560799194.seq -o /var/tmp/from_scwrl_560799194.pdb > /var/tmp/scwrl_560799194.log Error: Couldn't open file /var/tmp/from_scwrl_560799194.pdb or /var/tmp/from_scwrl_560799194.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_560799194_b.pdb or decoys//var/tmp/from_scwrl_560799194_b.pdb.gz for input Trying /var/tmp/from_scwrl_560799194_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_560799194_b.pdb or /var/tmp/from_scwrl_560799194_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_560799194_a.pdb or decoys//var/tmp/from_scwrl_560799194_a.pdb.gz for input Trying /var/tmp/from_scwrl_560799194_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_560799194_a.pdb or /var/tmp/from_scwrl_560799194_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_560799194.pdb or /var/tmp/from_scwrl_560799194_b.pdb or /var/tmp/from_scwrl_560799194_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1345272872.pdb -s /var/tmp/to_scwrl_1345272872.seq -o /var/tmp/from_scwrl_1345272872.pdb > /var/tmp/scwrl_1345272872.log Error: Couldn't open file /var/tmp/from_scwrl_1345272872.pdb or /var/tmp/from_scwrl_1345272872.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1345272872_b.pdb or decoys//var/tmp/from_scwrl_1345272872_b.pdb.gz for input Trying /var/tmp/from_scwrl_1345272872_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1345272872_b.pdb or /var/tmp/from_scwrl_1345272872_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1345272872_a.pdb or decoys//var/tmp/from_scwrl_1345272872_a.pdb.gz for input Trying /var/tmp/from_scwrl_1345272872_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1345272872_a.pdb or /var/tmp/from_scwrl_1345272872_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1345272872.pdb or /var/tmp/from_scwrl_1345272872_b.pdb or /var/tmp/from_scwrl_1345272872_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_811777522.pdb -s /var/tmp/to_scwrl_811777522.seq -o /var/tmp/from_scwrl_811777522.pdb > /var/tmp/scwrl_811777522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_811777522.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2027576771.pdb -s /var/tmp/to_scwrl_2027576771.seq -o /var/tmp/from_scwrl_2027576771.pdb > /var/tmp/scwrl_2027576771.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2027576771.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_104537156.pdb -s /var/tmp/to_scwrl_104537156.seq -o /var/tmp/from_scwrl_104537156.pdb > /var/tmp/scwrl_104537156.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_104537156.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1787153353.pdb -s /var/tmp/to_scwrl_1787153353.seq -o /var/tmp/from_scwrl_1787153353.pdb > /var/tmp/scwrl_1787153353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787153353.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_495516644.pdb -s /var/tmp/to_scwrl_495516644.seq -o /var/tmp/from_scwrl_495516644.pdb > /var/tmp/scwrl_495516644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_495516644.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_487932387.pdb -s /var/tmp/to_scwrl_487932387.seq -o /var/tmp/from_scwrl_487932387.pdb > /var/tmp/scwrl_487932387.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487932387.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_692696492.pdb -s /var/tmp/to_scwrl_692696492.seq -o /var/tmp/from_scwrl_692696492.pdb > /var/tmp/scwrl_692696492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_692696492.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_832316542.pdb -s /var/tmp/to_scwrl_832316542.seq -o /var/tmp/from_scwrl_832316542.pdb > /var/tmp/scwrl_832316542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_832316542.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1819468277.pdb -s /var/tmp/to_scwrl_1819468277.seq -o /var/tmp/from_scwrl_1819468277.pdb > /var/tmp/scwrl_1819468277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1819468277.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1991709482.pdb -s /var/tmp/to_scwrl_1991709482.seq -o /var/tmp/from_scwrl_1991709482.pdb > /var/tmp/scwrl_1991709482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991709482.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1159060197.pdb -s /var/tmp/to_scwrl_1159060197.seq -o /var/tmp/from_scwrl_1159060197.pdb > /var/tmp/scwrl_1159060197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1159060197.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_351272620.pdb -s /var/tmp/to_scwrl_351272620.seq -o /var/tmp/from_scwrl_351272620.pdb > /var/tmp/scwrl_351272620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_351272620.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1439180248.pdb -s /var/tmp/to_scwrl_1439180248.seq -o /var/tmp/from_scwrl_1439180248.pdb > /var/tmp/scwrl_1439180248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1439180248.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1623404709.pdb -s /var/tmp/to_scwrl_1623404709.seq -o /var/tmp/from_scwrl_1623404709.pdb > /var/tmp/scwrl_1623404709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623404709.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1909533937.pdb -s /var/tmp/to_scwrl_1909533937.seq -o /var/tmp/from_scwrl_1909533937.pdb > /var/tmp/scwrl_1909533937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909533937.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1706558566.pdb -s /var/tmp/to_scwrl_1706558566.seq -o /var/tmp/from_scwrl_1706558566.pdb > /var/tmp/scwrl_1706558566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706558566.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2130721786.pdb -s /var/tmp/to_scwrl_2130721786.seq -o /var/tmp/from_scwrl_2130721786.pdb > /var/tmp/scwrl_2130721786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130721786.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1574067188.pdb -s /var/tmp/to_scwrl_1574067188.seq -o /var/tmp/from_scwrl_1574067188.pdb > /var/tmp/scwrl_1574067188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1574067188.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_846583027.pdb -s /var/tmp/to_scwrl_846583027.seq -o /var/tmp/from_scwrl_846583027.pdb > /var/tmp/scwrl_846583027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_846583027.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_791744594.pdb -s /var/tmp/to_scwrl_791744594.seq -o /var/tmp/from_scwrl_791744594.pdb > /var/tmp/scwrl_791744594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_791744594.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1391510021.pdb -s /var/tmp/to_scwrl_1391510021.seq -o /var/tmp/from_scwrl_1391510021.pdb > /var/tmp/scwrl_1391510021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1391510021.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_754489341.pdb -s /var/tmp/to_scwrl_754489341.seq -o /var/tmp/from_scwrl_754489341.pdb > /var/tmp/scwrl_754489341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_754489341.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2128688372.pdb -s /var/tmp/to_scwrl_2128688372.seq -o /var/tmp/from_scwrl_2128688372.pdb > /var/tmp/scwrl_2128688372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2128688372.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_190734990.pdb -s /var/tmp/to_scwrl_190734990.seq -o /var/tmp/from_scwrl_190734990.pdb > /var/tmp/scwrl_190734990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190734990.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1934993075.pdb -s /var/tmp/to_scwrl_1934993075.seq -o /var/tmp/from_scwrl_1934993075.pdb > /var/tmp/scwrl_1934993075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1934993075.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1632035462.pdb -s /var/tmp/to_scwrl_1632035462.seq -o /var/tmp/from_scwrl_1632035462.pdb > /var/tmp/scwrl_1632035462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1632035462.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1460946963.pdb -s /var/tmp/to_scwrl_1460946963.seq -o /var/tmp/from_scwrl_1460946963.pdb > /var/tmp/scwrl_1460946963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1460946963.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1179242129.pdb -s /var/tmp/to_scwrl_1179242129.seq -o /var/tmp/from_scwrl_1179242129.pdb > /var/tmp/scwrl_1179242129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1179242129.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1036929579.pdb -s /var/tmp/to_scwrl_1036929579.seq -o /var/tmp/from_scwrl_1036929579.pdb > /var/tmp/scwrl_1036929579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1036929579.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2021746158.pdb -s /var/tmp/to_scwrl_2021746158.seq -o /var/tmp/from_scwrl_2021746158.pdb > /var/tmp/scwrl_2021746158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2021746158.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_377031355.pdb -s /var/tmp/to_scwrl_377031355.seq -o /var/tmp/from_scwrl_377031355.pdb > /var/tmp/scwrl_377031355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_377031355.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1848707100.pdb -s /var/tmp/to_scwrl_1848707100.seq -o /var/tmp/from_scwrl_1848707100.pdb > /var/tmp/scwrl_1848707100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1848707100.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1901839282.pdb -s /var/tmp/to_scwrl_1901839282.seq -o /var/tmp/from_scwrl_1901839282.pdb > /var/tmp/scwrl_1901839282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1901839282.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_481568511.pdb -s /var/tmp/to_scwrl_481568511.seq -o /var/tmp/from_scwrl_481568511.pdb > /var/tmp/scwrl_481568511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_481568511.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1488376806.pdb -s /var/tmp/to_scwrl_1488376806.seq -o /var/tmp/from_scwrl_1488376806.pdb > /var/tmp/scwrl_1488376806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1488376806.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_249872279.pdb -s /var/tmp/to_scwrl_249872279.seq -o /var/tmp/from_scwrl_249872279.pdb > /var/tmp/scwrl_249872279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_249872279.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_969500898.pdb -s /var/tmp/to_scwrl_969500898.seq -o /var/tmp/from_scwrl_969500898.pdb > /var/tmp/scwrl_969500898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969500898.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 314 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_33589652.pdb -s /var/tmp/to_scwrl_33589652.seq -o /var/tmp/from_scwrl_33589652.pdb > /var/tmp/scwrl_33589652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_33589652.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1082188821.pdb -s /var/tmp/to_scwrl_1082188821.seq -o /var/tmp/from_scwrl_1082188821.pdb > /var/tmp/scwrl_1082188821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1082188821.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_641485529.pdb -s /var/tmp/to_scwrl_641485529.seq -o /var/tmp/from_scwrl_641485529.pdb > /var/tmp/scwrl_641485529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_641485529.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2025299134.pdb -s /var/tmp/to_scwrl_2025299134.seq -o /var/tmp/from_scwrl_2025299134.pdb > /var/tmp/scwrl_2025299134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2025299134.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_93765372.pdb -s /var/tmp/to_scwrl_93765372.seq -o /var/tmp/from_scwrl_93765372.pdb > /var/tmp/scwrl_93765372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93765372.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_992758149.pdb -s /var/tmp/to_scwrl_992758149.seq -o /var/tmp/from_scwrl_992758149.pdb > /var/tmp/scwrl_992758149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_992758149.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1316995735.pdb -s /var/tmp/to_scwrl_1316995735.seq -o /var/tmp/from_scwrl_1316995735.pdb > /var/tmp/scwrl_1316995735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1316995735.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1717170081.pdb -s /var/tmp/to_scwrl_1717170081.seq -o /var/tmp/from_scwrl_1717170081.pdb > /var/tmp/scwrl_1717170081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1717170081.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_754808439.pdb -s /var/tmp/to_scwrl_754808439.seq -o /var/tmp/from_scwrl_754808439.pdb > /var/tmp/scwrl_754808439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_754808439.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_876070655.pdb -s /var/tmp/to_scwrl_876070655.seq -o /var/tmp/from_scwrl_876070655.pdb > /var/tmp/scwrl_876070655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_876070655.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1700408220.pdb -s /var/tmp/to_scwrl_1700408220.seq -o /var/tmp/from_scwrl_1700408220.pdb > /var/tmp/scwrl_1700408220.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700408220.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_181391981.pdb -s /var/tmp/to_scwrl_181391981.seq -o /var/tmp/from_scwrl_181391981.pdb > /var/tmp/scwrl_181391981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_181391981.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1722653681.pdb -s /var/tmp/to_scwrl_1722653681.seq -o /var/tmp/from_scwrl_1722653681.pdb > /var/tmp/scwrl_1722653681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1722653681.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_344669168.pdb -s /var/tmp/to_scwrl_344669168.seq -o /var/tmp/from_scwrl_344669168.pdb > /var/tmp/scwrl_344669168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_344669168.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1572902002.pdb -s /var/tmp/to_scwrl_1572902002.seq -o /var/tmp/from_scwrl_1572902002.pdb > /var/tmp/scwrl_1572902002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1572902002.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_329659376.pdb -s /var/tmp/to_scwrl_329659376.seq -o /var/tmp/from_scwrl_329659376.pdb > /var/tmp/scwrl_329659376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329659376.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_325873893.pdb -s /var/tmp/to_scwrl_325873893.seq -o /var/tmp/from_scwrl_325873893.pdb > /var/tmp/scwrl_325873893.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_325873893.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1763636992.pdb -s /var/tmp/to_scwrl_1763636992.seq -o /var/tmp/from_scwrl_1763636992.pdb > /var/tmp/scwrl_1763636992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1763636992.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_117168804.pdb -s /var/tmp/to_scwrl_117168804.seq -o /var/tmp/from_scwrl_117168804.pdb > /var/tmp/scwrl_117168804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_117168804.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1957909356.pdb -s /var/tmp/to_scwrl_1957909356.seq -o /var/tmp/from_scwrl_1957909356.pdb > /var/tmp/scwrl_1957909356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1957909356.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1077100309.pdb -s /var/tmp/to_scwrl_1077100309.seq -o /var/tmp/from_scwrl_1077100309.pdb > /var/tmp/scwrl_1077100309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1077100309.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1296410933.pdb -s /var/tmp/to_scwrl_1296410933.seq -o /var/tmp/from_scwrl_1296410933.pdb > /var/tmp/scwrl_1296410933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1296410933.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_847355288.pdb -s /var/tmp/to_scwrl_847355288.seq -o /var/tmp/from_scwrl_847355288.pdb > /var/tmp/scwrl_847355288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847355288.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_951362821.pdb -s /var/tmp/to_scwrl_951362821.seq -o /var/tmp/from_scwrl_951362821.pdb > /var/tmp/scwrl_951362821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_951362821.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1673442288.pdb -s /var/tmp/to_scwrl_1673442288.seq -o /var/tmp/from_scwrl_1673442288.pdb > /var/tmp/scwrl_1673442288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1673442288.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_548578741.pdb -s /var/tmp/to_scwrl_548578741.seq -o /var/tmp/from_scwrl_548578741.pdb > /var/tmp/scwrl_548578741.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_548578741.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_705718456.pdb -s /var/tmp/to_scwrl_705718456.seq -o /var/tmp/from_scwrl_705718456.pdb > /var/tmp/scwrl_705718456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_705718456.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_7527153.pdb -s /var/tmp/to_scwrl_7527153.seq -o /var/tmp/from_scwrl_7527153.pdb > /var/tmp/scwrl_7527153.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_7527153.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2036955547.pdb -s /var/tmp/to_scwrl_2036955547.seq -o /var/tmp/from_scwrl_2036955547.pdb > /var/tmp/scwrl_2036955547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036955547.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_955590735.pdb -s /var/tmp/to_scwrl_955590735.seq -o /var/tmp/from_scwrl_955590735.pdb > /var/tmp/scwrl_955590735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_955590735.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_977028051.pdb -s /var/tmp/to_scwrl_977028051.seq -o /var/tmp/from_scwrl_977028051.pdb > /var/tmp/scwrl_977028051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_977028051.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2070545199.pdb -s /var/tmp/to_scwrl_2070545199.seq -o /var/tmp/from_scwrl_2070545199.pdb > /var/tmp/scwrl_2070545199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2070545199.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2037779556.pdb -s /var/tmp/to_scwrl_2037779556.seq -o /var/tmp/from_scwrl_2037779556.pdb > /var/tmp/scwrl_2037779556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2037779556.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1618513579.pdb -s /var/tmp/to_scwrl_1618513579.seq -o /var/tmp/from_scwrl_1618513579.pdb > /var/tmp/scwrl_1618513579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1618513579.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1948360687.pdb -s /var/tmp/to_scwrl_1948360687.seq -o /var/tmp/from_scwrl_1948360687.pdb > /var/tmp/scwrl_1948360687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1948360687.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2131544928.pdb -s /var/tmp/to_scwrl_2131544928.seq -o /var/tmp/from_scwrl_2131544928.pdb > /var/tmp/scwrl_2131544928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2131544928.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_463788081.pdb -s /var/tmp/to_scwrl_463788081.seq -o /var/tmp/from_scwrl_463788081.pdb > /var/tmp/scwrl_463788081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463788081.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1117872775.pdb -s /var/tmp/to_scwrl_1117872775.seq -o /var/tmp/from_scwrl_1117872775.pdb > /var/tmp/scwrl_1117872775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1117872775.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1701231363.pdb -s /var/tmp/to_scwrl_1701231363.seq -o /var/tmp/from_scwrl_1701231363.pdb > /var/tmp/scwrl_1701231363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1701231363.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1218596520.pdb -s /var/tmp/to_scwrl_1218596520.seq -o /var/tmp/from_scwrl_1218596520.pdb > /var/tmp/scwrl_1218596520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218596520.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1993943431.pdb -s /var/tmp/to_scwrl_1993943431.seq -o /var/tmp/from_scwrl_1993943431.pdb > /var/tmp/scwrl_1993943431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1993943431.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1254155936.pdb -s /var/tmp/to_scwrl_1254155936.seq -o /var/tmp/from_scwrl_1254155936.pdb > /var/tmp/scwrl_1254155936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1254155936.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1399988501.pdb -s /var/tmp/to_scwrl_1399988501.seq -o /var/tmp/from_scwrl_1399988501.pdb > /var/tmp/scwrl_1399988501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399988501.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1569113465.pdb -s /var/tmp/to_scwrl_1569113465.seq -o /var/tmp/from_scwrl_1569113465.pdb > /var/tmp/scwrl_1569113465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569113465.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1598825104.pdb -s /var/tmp/to_scwrl_1598825104.seq -o /var/tmp/from_scwrl_1598825104.pdb > /var/tmp/scwrl_1598825104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1598825104.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_825406857.pdb -s /var/tmp/to_scwrl_825406857.seq -o /var/tmp/from_scwrl_825406857.pdb > /var/tmp/scwrl_825406857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_825406857.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1898772841.pdb -s /var/tmp/to_scwrl_1898772841.seq -o /var/tmp/from_scwrl_1898772841.pdb > /var/tmp/scwrl_1898772841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1898772841.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1924698998.pdb -s /var/tmp/to_scwrl_1924698998.seq -o /var/tmp/from_scwrl_1924698998.pdb > /var/tmp/scwrl_1924698998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1924698998.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_441560202.pdb -s /var/tmp/to_scwrl_441560202.seq -o /var/tmp/from_scwrl_441560202.pdb > /var/tmp/scwrl_441560202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441560202.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2015941646.pdb -s /var/tmp/to_scwrl_2015941646.seq -o /var/tmp/from_scwrl_2015941646.pdb > /var/tmp/scwrl_2015941646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2015941646.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1735124707.pdb -s /var/tmp/to_scwrl_1735124707.seq -o /var/tmp/from_scwrl_1735124707.pdb > /var/tmp/scwrl_1735124707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1735124707.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1518660511.pdb -s /var/tmp/to_scwrl_1518660511.seq -o /var/tmp/from_scwrl_1518660511.pdb > /var/tmp/scwrl_1518660511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518660511.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1164868932.pdb -s /var/tmp/to_scwrl_1164868932.seq -o /var/tmp/from_scwrl_1164868932.pdb > /var/tmp/scwrl_1164868932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164868932.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_434996348.pdb -s /var/tmp/to_scwrl_434996348.seq -o /var/tmp/from_scwrl_434996348.pdb > /var/tmp/scwrl_434996348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_434996348.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_322539685.pdb -s /var/tmp/to_scwrl_322539685.seq -o /var/tmp/from_scwrl_322539685.pdb > /var/tmp/scwrl_322539685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322539685.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_690827575.pdb -s /var/tmp/to_scwrl_690827575.seq -o /var/tmp/from_scwrl_690827575.pdb > /var/tmp/scwrl_690827575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690827575.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_983575089.pdb -s /var/tmp/to_scwrl_983575089.seq -o /var/tmp/from_scwrl_983575089.pdb > /var/tmp/scwrl_983575089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_983575089.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1028258141.pdb -s /var/tmp/to_scwrl_1028258141.seq -o /var/tmp/from_scwrl_1028258141.pdb > /var/tmp/scwrl_1028258141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1028258141.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_698354728.pdb -s /var/tmp/to_scwrl_698354728.seq -o /var/tmp/from_scwrl_698354728.pdb > /var/tmp/scwrl_698354728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698354728.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_873046989.pdb -s /var/tmp/to_scwrl_873046989.seq -o /var/tmp/from_scwrl_873046989.pdb > /var/tmp/scwrl_873046989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_873046989.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1983848876.pdb -s /var/tmp/to_scwrl_1983848876.seq -o /var/tmp/from_scwrl_1983848876.pdb > /var/tmp/scwrl_1983848876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983848876.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1675382778.pdb -s /var/tmp/to_scwrl_1675382778.seq -o /var/tmp/from_scwrl_1675382778.pdb > /var/tmp/scwrl_1675382778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1675382778.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_796108542.pdb -s /var/tmp/to_scwrl_796108542.seq -o /var/tmp/from_scwrl_796108542.pdb > /var/tmp/scwrl_796108542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796108542.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1874144785.pdb -s /var/tmp/to_scwrl_1874144785.seq -o /var/tmp/from_scwrl_1874144785.pdb > /var/tmp/scwrl_1874144785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1874144785.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1146412711.pdb -s /var/tmp/to_scwrl_1146412711.seq -o /var/tmp/from_scwrl_1146412711.pdb > /var/tmp/scwrl_1146412711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1146412711.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_596985582.pdb -s /var/tmp/to_scwrl_596985582.seq -o /var/tmp/from_scwrl_596985582.pdb > /var/tmp/scwrl_596985582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_596985582.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1858206067.pdb -s /var/tmp/to_scwrl_1858206067.seq -o /var/tmp/from_scwrl_1858206067.pdb > /var/tmp/scwrl_1858206067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1858206067.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1610200792.pdb -s /var/tmp/to_scwrl_1610200792.seq -o /var/tmp/from_scwrl_1610200792.pdb > /var/tmp/scwrl_1610200792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1610200792.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1714858357.pdb -s /var/tmp/to_scwrl_1714858357.seq -o /var/tmp/from_scwrl_1714858357.pdb > /var/tmp/scwrl_1714858357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1714858357.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1411953783.pdb -s /var/tmp/to_scwrl_1411953783.seq -o /var/tmp/from_scwrl_1411953783.pdb > /var/tmp/scwrl_1411953783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1411953783.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_681313666.pdb -s /var/tmp/to_scwrl_681313666.seq -o /var/tmp/from_scwrl_681313666.pdb > /var/tmp/scwrl_681313666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_681313666.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1561318141.pdb -s /var/tmp/to_scwrl_1561318141.seq -o /var/tmp/from_scwrl_1561318141.pdb > /var/tmp/scwrl_1561318141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1561318141.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_518626073.pdb -s /var/tmp/to_scwrl_518626073.seq -o /var/tmp/from_scwrl_518626073.pdb > /var/tmp/scwrl_518626073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_518626073.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2081302167.pdb -s /var/tmp/to_scwrl_2081302167.seq -o /var/tmp/from_scwrl_2081302167.pdb > /var/tmp/scwrl_2081302167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2081302167.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_982947961.pdb -s /var/tmp/to_scwrl_982947961.seq -o /var/tmp/from_scwrl_982947961.pdb > /var/tmp/scwrl_982947961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_982947961.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2117451178.pdb -s /var/tmp/to_scwrl_2117451178.seq -o /var/tmp/from_scwrl_2117451178.pdb > /var/tmp/scwrl_2117451178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117451178.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_759225377.pdb -s /var/tmp/to_scwrl_759225377.seq -o /var/tmp/from_scwrl_759225377.pdb > /var/tmp/scwrl_759225377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759225377.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_734237155.pdb -s /var/tmp/to_scwrl_734237155.seq -o /var/tmp/from_scwrl_734237155.pdb > /var/tmp/scwrl_734237155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_734237155.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1894666529.pdb -s /var/tmp/to_scwrl_1894666529.seq -o /var/tmp/from_scwrl_1894666529.pdb > /var/tmp/scwrl_1894666529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1894666529.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1200785579.pdb -s /var/tmp/to_scwrl_1200785579.seq -o /var/tmp/from_scwrl_1200785579.pdb > /var/tmp/scwrl_1200785579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200785579.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_602695154.pdb -s /var/tmp/to_scwrl_602695154.seq -o /var/tmp/from_scwrl_602695154.pdb > /var/tmp/scwrl_602695154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602695154.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1482307589.pdb -s /var/tmp/to_scwrl_1482307589.seq -o /var/tmp/from_scwrl_1482307589.pdb > /var/tmp/scwrl_1482307589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482307589.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_571962444.pdb -s /var/tmp/to_scwrl_571962444.seq -o /var/tmp/from_scwrl_571962444.pdb > /var/tmp/scwrl_571962444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_571962444.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1767564087.pdb -s /var/tmp/to_scwrl_1767564087.seq -o /var/tmp/from_scwrl_1767564087.pdb > /var/tmp/scwrl_1767564087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1767564087.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1917303937.pdb -s /var/tmp/to_scwrl_1917303937.seq -o /var/tmp/from_scwrl_1917303937.pdb > /var/tmp/scwrl_1917303937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1917303937.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_894502130.pdb -s /var/tmp/to_scwrl_894502130.seq -o /var/tmp/from_scwrl_894502130.pdb > /var/tmp/scwrl_894502130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_894502130.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_310908015.pdb -s /var/tmp/to_scwrl_310908015.seq -o /var/tmp/from_scwrl_310908015.pdb > /var/tmp/scwrl_310908015.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_310908015.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_753395379.pdb -s /var/tmp/to_scwrl_753395379.seq -o /var/tmp/from_scwrl_753395379.pdb > /var/tmp/scwrl_753395379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753395379.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1922760270.pdb -s /var/tmp/to_scwrl_1922760270.seq -o /var/tmp/from_scwrl_1922760270.pdb > /var/tmp/scwrl_1922760270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1922760270.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1009262743.pdb -s /var/tmp/to_scwrl_1009262743.seq -o /var/tmp/from_scwrl_1009262743.pdb > /var/tmp/scwrl_1009262743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1009262743.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1626442367.pdb -s /var/tmp/to_scwrl_1626442367.seq -o /var/tmp/from_scwrl_1626442367.pdb > /var/tmp/scwrl_1626442367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626442367.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1759125499.pdb -s /var/tmp/to_scwrl_1759125499.seq -o /var/tmp/from_scwrl_1759125499.pdb > /var/tmp/scwrl_1759125499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1759125499.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 74, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 78, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 80, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 298, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 538, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 540, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 798, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 800, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 802, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 804, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 914, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 916, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 918, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 920, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 930, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 932, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 934, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 936, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1198, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1200, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1202, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1204, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_537161874.pdb -s /var/tmp/to_scwrl_537161874.seq -o /var/tmp/from_scwrl_537161874.pdb > /var/tmp/scwrl_537161874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_537161874.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_275067262.pdb -s /var/tmp/to_scwrl_275067262.seq -o /var/tmp/from_scwrl_275067262.pdb > /var/tmp/scwrl_275067262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_275067262.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1485786638.pdb -s /var/tmp/to_scwrl_1485786638.seq -o /var/tmp/from_scwrl_1485786638.pdb > /var/tmp/scwrl_1485786638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1485786638.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1683574585.pdb -s /var/tmp/to_scwrl_1683574585.seq -o /var/tmp/from_scwrl_1683574585.pdb > /var/tmp/scwrl_1683574585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1683574585.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_872052844.pdb -s /var/tmp/to_scwrl_872052844.seq -o /var/tmp/from_scwrl_872052844.pdb > /var/tmp/scwrl_872052844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_872052844.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1196509058.pdb -s /var/tmp/to_scwrl_1196509058.seq -o /var/tmp/from_scwrl_1196509058.pdb > /var/tmp/scwrl_1196509058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1196509058.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1146291731.pdb -s /var/tmp/to_scwrl_1146291731.seq -o /var/tmp/from_scwrl_1146291731.pdb > /var/tmp/scwrl_1146291731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1146291731.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_439427555.pdb -s /var/tmp/to_scwrl_439427555.seq -o /var/tmp/from_scwrl_439427555.pdb > /var/tmp/scwrl_439427555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439427555.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_460979195.pdb -s /var/tmp/to_scwrl_460979195.seq -o /var/tmp/from_scwrl_460979195.pdb > /var/tmp/scwrl_460979195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460979195.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1827605397.pdb -s /var/tmp/to_scwrl_1827605397.seq -o /var/tmp/from_scwrl_1827605397.pdb > /var/tmp/scwrl_1827605397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1827605397.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2000745696.pdb -s /var/tmp/to_scwrl_2000745696.seq -o /var/tmp/from_scwrl_2000745696.pdb > /var/tmp/scwrl_2000745696.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2000745696.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_979605268.pdb -s /var/tmp/to_scwrl_979605268.seq -o /var/tmp/from_scwrl_979605268.pdb > /var/tmp/scwrl_979605268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_979605268.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1761423918.pdb -s /var/tmp/to_scwrl_1761423918.seq -o /var/tmp/from_scwrl_1761423918.pdb > /var/tmp/scwrl_1761423918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1761423918.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_836210010.pdb -s /var/tmp/to_scwrl_836210010.seq -o /var/tmp/from_scwrl_836210010.pdb > /var/tmp/scwrl_836210010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_836210010.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_949572799.pdb -s /var/tmp/to_scwrl_949572799.seq -o /var/tmp/from_scwrl_949572799.pdb > /var/tmp/scwrl_949572799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_949572799.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_373165648.pdb -s /var/tmp/to_scwrl_373165648.seq -o /var/tmp/from_scwrl_373165648.pdb > /var/tmp/scwrl_373165648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_373165648.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1570447165.pdb -s /var/tmp/to_scwrl_1570447165.seq -o /var/tmp/from_scwrl_1570447165.pdb > /var/tmp/scwrl_1570447165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1570447165.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_696755681.pdb -s /var/tmp/to_scwrl_696755681.seq -o /var/tmp/from_scwrl_696755681.pdb > /var/tmp/scwrl_696755681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696755681.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1573951227.pdb -s /var/tmp/to_scwrl_1573951227.seq -o /var/tmp/from_scwrl_1573951227.pdb > /var/tmp/scwrl_1573951227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1573951227.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_25658672.pdb -s /var/tmp/to_scwrl_25658672.seq -o /var/tmp/from_scwrl_25658672.pdb > /var/tmp/scwrl_25658672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25658672.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_31579623.pdb -s /var/tmp/to_scwrl_31579623.seq -o /var/tmp/from_scwrl_31579623.pdb > /var/tmp/scwrl_31579623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31579623.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2145913672.pdb -s /var/tmp/to_scwrl_2145913672.seq -o /var/tmp/from_scwrl_2145913672.pdb > /var/tmp/scwrl_2145913672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2145913672.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1793222759.pdb -s /var/tmp/to_scwrl_1793222759.seq -o /var/tmp/from_scwrl_1793222759.pdb > /var/tmp/scwrl_1793222759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1793222759.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1948883560.pdb -s /var/tmp/to_scwrl_1948883560.seq -o /var/tmp/from_scwrl_1948883560.pdb > /var/tmp/scwrl_1948883560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1948883560.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_892932155.pdb -s /var/tmp/to_scwrl_892932155.seq -o /var/tmp/from_scwrl_892932155.pdb > /var/tmp/scwrl_892932155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_892932155.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2104130774.pdb -s /var/tmp/to_scwrl_2104130774.seq -o /var/tmp/from_scwrl_2104130774.pdb > /var/tmp/scwrl_2104130774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2104130774.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_554795292.pdb -s /var/tmp/to_scwrl_554795292.seq -o /var/tmp/from_scwrl_554795292.pdb > /var/tmp/scwrl_554795292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554795292.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_668208778.pdb -s /var/tmp/to_scwrl_668208778.seq -o /var/tmp/from_scwrl_668208778.pdb > /var/tmp/scwrl_668208778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668208778.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_965909870.pdb -s /var/tmp/to_scwrl_965909870.seq -o /var/tmp/from_scwrl_965909870.pdb > /var/tmp/scwrl_965909870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_965909870.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_33754013.pdb -s /var/tmp/to_scwrl_33754013.seq -o /var/tmp/from_scwrl_33754013.pdb > /var/tmp/scwrl_33754013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_33754013.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_279850631.pdb -s /var/tmp/to_scwrl_279850631.seq -o /var/tmp/from_scwrl_279850631.pdb > /var/tmp/scwrl_279850631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_279850631.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1503071744.pdb -s /var/tmp/to_scwrl_1503071744.seq -o /var/tmp/from_scwrl_1503071744.pdb > /var/tmp/scwrl_1503071744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503071744.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_308821275.pdb -s /var/tmp/to_scwrl_308821275.seq -o /var/tmp/from_scwrl_308821275.pdb > /var/tmp/scwrl_308821275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_308821275.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1765637269.pdb -s /var/tmp/to_scwrl_1765637269.seq -o /var/tmp/from_scwrl_1765637269.pdb > /var/tmp/scwrl_1765637269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1765637269.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1039162683.pdb -s /var/tmp/to_scwrl_1039162683.seq -o /var/tmp/from_scwrl_1039162683.pdb > /var/tmp/scwrl_1039162683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039162683.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1180874119.pdb -s /var/tmp/to_scwrl_1180874119.seq -o /var/tmp/from_scwrl_1180874119.pdb > /var/tmp/scwrl_1180874119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1180874119.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_814662681.pdb -s /var/tmp/to_scwrl_814662681.seq -o /var/tmp/from_scwrl_814662681.pdb > /var/tmp/scwrl_814662681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_814662681.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_37970767.pdb -s /var/tmp/to_scwrl_37970767.seq -o /var/tmp/from_scwrl_37970767.pdb > /var/tmp/scwrl_37970767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_37970767.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1620301674.pdb -s /var/tmp/to_scwrl_1620301674.seq -o /var/tmp/from_scwrl_1620301674.pdb > /var/tmp/scwrl_1620301674.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1620301674.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1275641875.pdb -s /var/tmp/to_scwrl_1275641875.seq -o /var/tmp/from_scwrl_1275641875.pdb > /var/tmp/scwrl_1275641875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1275641875.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1865576165.pdb -s /var/tmp/to_scwrl_1865576165.seq -o /var/tmp/from_scwrl_1865576165.pdb > /var/tmp/scwrl_1865576165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865576165.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1473563723.pdb -s /var/tmp/to_scwrl_1473563723.seq -o /var/tmp/from_scwrl_1473563723.pdb > /var/tmp/scwrl_1473563723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473563723.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_107763496.pdb -s /var/tmp/to_scwrl_107763496.seq -o /var/tmp/from_scwrl_107763496.pdb > /var/tmp/scwrl_107763496.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107763496.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1479516436.pdb -s /var/tmp/to_scwrl_1479516436.seq -o /var/tmp/from_scwrl_1479516436.pdb > /var/tmp/scwrl_1479516436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1479516436.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_162290087.pdb -s /var/tmp/to_scwrl_162290087.seq -o /var/tmp/from_scwrl_162290087.pdb > /var/tmp/scwrl_162290087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_162290087.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1057336296.pdb -s /var/tmp/to_scwrl_1057336296.seq -o /var/tmp/from_scwrl_1057336296.pdb > /var/tmp/scwrl_1057336296.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1057336296.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1852682084.pdb -s /var/tmp/to_scwrl_1852682084.seq -o /var/tmp/from_scwrl_1852682084.pdb > /var/tmp/scwrl_1852682084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1852682084.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1732737252.pdb -s /var/tmp/to_scwrl_1732737252.seq -o /var/tmp/from_scwrl_1732737252.pdb > /var/tmp/scwrl_1732737252.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732737252.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1754091976.pdb -s /var/tmp/to_scwrl_1754091976.seq -o /var/tmp/from_scwrl_1754091976.pdb > /var/tmp/scwrl_1754091976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754091976.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1279149665.pdb -s /var/tmp/to_scwrl_1279149665.seq -o /var/tmp/from_scwrl_1279149665.pdb > /var/tmp/scwrl_1279149665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1279149665.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)Q66.O and (T0313)A67.N only 0.000 apart, marking (T0313)A67.N as missing WARNING: atoms too close: (T0313)N104.O and (T0313)Q105.N only 0.000 apart, marking (T0313)Q105.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1758395924.pdb -s /var/tmp/to_scwrl_1758395924.seq -o /var/tmp/from_scwrl_1758395924.pdb > /var/tmp/scwrl_1758395924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1758395924.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)Q66.O and (T0313)A67.N only 0.000 apart, marking (T0313)A67.N as missing WARNING: atoms too close: (T0313)N104.O and (T0313)Q105.N only 0.000 apart, marking (T0313)Q105.N as missing WARNING: atoms too close: (T0313)L162.O and (T0313)Y163.N only 0.000 apart, marking (T0313)Y163.N as missing WARNING: atoms too close: (T0313)V304.O and (T0313)E305.N only 0.000 apart, marking (T0313)E305.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1785671600.pdb -s /var/tmp/to_scwrl_1785671600.seq -o /var/tmp/from_scwrl_1785671600.pdb > /var/tmp/scwrl_1785671600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785671600.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1277579690.pdb -s /var/tmp/to_scwrl_1277579690.seq -o /var/tmp/from_scwrl_1277579690.pdb > /var/tmp/scwrl_1277579690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1277579690.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)L162.O and (T0313)Y163.N only 0.000 apart, marking (T0313)Y163.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1404135037.pdb -s /var/tmp/to_scwrl_1404135037.seq -o /var/tmp/from_scwrl_1404135037.pdb > /var/tmp/scwrl_1404135037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1404135037.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)P303.O and (T0313)V304.N only 0.000 apart, marking (T0313)V304.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1587071513.pdb -s /var/tmp/to_scwrl_1587071513.seq -o /var/tmp/from_scwrl_1587071513.pdb > /var/tmp/scwrl_1587071513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1587071513.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_23028198.pdb -s /var/tmp/to_scwrl_23028198.seq -o /var/tmp/from_scwrl_23028198.pdb > /var/tmp/scwrl_23028198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_23028198.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1360782164.pdb -s /var/tmp/to_scwrl_1360782164.seq -o /var/tmp/from_scwrl_1360782164.pdb > /var/tmp/scwrl_1360782164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1360782164.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_2141866806.pdb -s /var/tmp/to_scwrl_2141866806.seq -o /var/tmp/from_scwrl_2141866806.pdb > /var/tmp/scwrl_2141866806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2141866806.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_691236976.pdb -s /var/tmp/to_scwrl_691236976.seq -o /var/tmp/from_scwrl_691236976.pdb > /var/tmp/scwrl_691236976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_691236976.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_179208388.pdb -s /var/tmp/to_scwrl_179208388.seq -o /var/tmp/from_scwrl_179208388.pdb > /var/tmp/scwrl_179208388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_179208388.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_28137172.pdb -s /var/tmp/to_scwrl_28137172.seq -o /var/tmp/from_scwrl_28137172.pdb > /var/tmp/scwrl_28137172.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28137172.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_971087607.pdb -s /var/tmp/to_scwrl_971087607.seq -o /var/tmp/from_scwrl_971087607.pdb > /var/tmp/scwrl_971087607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_971087607.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1682280132.pdb -s /var/tmp/to_scwrl_1682280132.seq -o /var/tmp/from_scwrl_1682280132.pdb > /var/tmp/scwrl_1682280132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682280132.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_336958447.pdb -s /var/tmp/to_scwrl_336958447.seq -o /var/tmp/from_scwrl_336958447.pdb > /var/tmp/scwrl_336958447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336958447.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_589241229.pdb -s /var/tmp/to_scwrl_589241229.seq -o /var/tmp/from_scwrl_589241229.pdb > /var/tmp/scwrl_589241229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_589241229.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_573959168.pdb -s /var/tmp/to_scwrl_573959168.seq -o /var/tmp/from_scwrl_573959168.pdb > /var/tmp/scwrl_573959168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573959168.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1517832566.pdb -s /var/tmp/to_scwrl_1517832566.seq -o /var/tmp/from_scwrl_1517832566.pdb > /var/tmp/scwrl_1517832566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1517832566.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_1403903909.pdb -s /var/tmp/to_scwrl_1403903909.seq -o /var/tmp/from_scwrl_1403903909.pdb > /var/tmp/scwrl_1403903909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1403903909.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_611929936.pdb -s /var/tmp/to_scwrl_611929936.seq -o /var/tmp/from_scwrl_611929936.pdb > /var/tmp/scwrl_611929936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_611929936.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_990650594.pdb -s /var/tmp/to_scwrl_990650594.seq -o /var/tmp/from_scwrl_990650594.pdb > /var/tmp/scwrl_990650594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_990650594.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_532062138.pdb -s /var/tmp/to_scwrl_532062138.seq -o /var/tmp/from_scwrl_532062138.pdb > /var/tmp/scwrl_532062138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_532062138.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_330022454.pdb -s /var/tmp/to_scwrl_330022454.seq -o /var/tmp/from_scwrl_330022454.pdb > /var/tmp/scwrl_330022454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_330022454.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 290 ; scwrl3 -i /var/tmp/to_scwrl_316730671.pdb -s /var/tmp/to_scwrl_316730671.seq -o /var/tmp/from_scwrl_316730671.pdb > /var/tmp/scwrl_316730671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_316730671.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 70.2073 sec, elapsed time= 766.828 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -156.286 shub_TS1 costs 0 real_cost = -151.955 panther2_TS1-scwrl costs 0 real_cost = -117.483 panther2_TS1 costs 0 real_cost = -110.126 nFOLD_TS5-scwrl costs 0 real_cost = 401.751 nFOLD_TS5 costs 0 real_cost = 568.039 nFOLD_TS4-scwrl costs 0 real_cost = 364.152 nFOLD_TS4 costs 0 real_cost = 532.152 nFOLD_TS3-scwrl costs 0 real_cost = -51.7079 nFOLD_TS3 costs 0 real_cost = 86.1909 nFOLD_TS2-scwrl costs 0 real_cost = -121.033 nFOLD_TS2 costs 0 real_cost = 27.8362 nFOLD_TS1-scwrl costs 0 real_cost = -135.765 nFOLD_TS1 costs 0 real_cost = 24.967 mGen-3D_TS1-scwrl costs 0 real_cost = -121.329 mGen-3D_TS1 costs 0 real_cost = 43.8643 keasar-server_TS5-scwrl costs 0 real_cost = -67.7196 keasar-server_TS5 costs 0 real_cost = -64.4154 keasar-server_TS4-scwrl costs 0 real_cost = -60.1175 keasar-server_TS4 costs 0 real_cost = -50.6019 keasar-server_TS3-scwrl costs 0 real_cost = -60.1175 keasar-server_TS3 costs 0 real_cost = -50.6019 keasar-server_TS2-scwrl costs 0 real_cost = -60.1175 keasar-server_TS2 costs 0 real_cost = -50.6019 keasar-server_TS1-scwrl costs 0 real_cost = -61.9095 keasar-server_TS1 costs 0 real_cost = -51.2514 karypis.srv_TS5-scwrl costs 0 real_cost = 333.284 karypis.srv_TS5 costs 0 real_cost = 332.95 karypis.srv_TS4-scwrl costs 0 real_cost = 350.121 karypis.srv_TS4 costs 0 real_cost = 349.043 karypis.srv_TS3-scwrl costs 0 real_cost = 378.282 karypis.srv_TS3 costs 0 real_cost = 373.673 karypis.srv_TS2-scwrl costs 0 real_cost = -161.685 karypis.srv_TS2 costs 0 real_cost = -161.935 karypis.srv_TS1-scwrl costs 0 real_cost = -161.387 karypis.srv_TS1 costs 0 real_cost = -161.387 karypis.srv.4_TS5-scwrl costs 0 real_cost = 338.901 karypis.srv.4_TS5 costs 0 real_cost = 338.821 karypis.srv.4_TS4-scwrl costs 0 real_cost = 345.824 karypis.srv.4_TS4 costs 0 real_cost = 345.762 karypis.srv.4_TS3-scwrl costs 0 real_cost = 331.793 karypis.srv.4_TS3 costs 0 real_cost = 331.914 karypis.srv.4_TS2-scwrl costs 0 real_cost = 372.301 karypis.srv.4_TS2 costs 0 real_cost = 372.107 karypis.srv.4_TS1-scwrl costs 0 real_cost = 342.761 karypis.srv.4_TS1 costs 0 real_cost = 345.2 karypis.srv.2_TS5-scwrl costs 0 real_cost = 403.546 karypis.srv.2_TS5 costs 0 real_cost = 403.837 karypis.srv.2_TS4-scwrl costs 0 real_cost = 423.1 karypis.srv.2_TS4 costs 0 real_cost = 423.572 karypis.srv.2_TS3-scwrl costs 0 real_cost = -155.507 karypis.srv.2_TS3 costs 0 real_cost = -155.507 karypis.srv.2_TS2-scwrl costs 0 real_cost = -153.591 karypis.srv.2_TS2 costs 0 real_cost = -153.591 karypis.srv.2_TS1-scwrl costs 0 real_cost = -148.639 karypis.srv.2_TS1 costs 0 real_cost = -148.639 forecast-s_AL5-scwrl costs 0 real_cost = 658.361 forecast-s_AL5 costs 0 real_cost = 723.301 forecast-s_AL4-scwrl costs 0 real_cost = -71.2079 forecast-s_AL4 costs 0 real_cost = 146.111 forecast-s_AL3-scwrl costs 0 real_cost = -135.028 forecast-s_AL3 costs 0 real_cost = 83.8012 forecast-s_AL2-scwrl costs 0 real_cost = -110.929 forecast-s_AL2 costs 0 real_cost = 82.7409 forecast-s_AL1-scwrl costs 0 real_cost = -107.589 forecast-s_AL1 costs 0 real_cost = 85.6638 beautshotbase_TS1-scwrl costs 0 real_cost = -136.185 beautshotbase_TS1 costs 0 real_cost = -132.223 beautshot_TS1-scwrl costs 0 real_cost = -146.025 beautshot_TS1 costs 0 real_cost = -144.468 Zhang-Server_TS5-scwrl costs 0 real_cost = -135.361 Zhang-Server_TS5 costs 0 real_cost = -134.472 Zhang-Server_TS4-scwrl costs 0 real_cost = -135.5 Zhang-Server_TS4 costs 0 real_cost = -131.597 Zhang-Server_TS3-scwrl costs 0 real_cost = -144.306 Zhang-Server_TS3 costs 0 real_cost = -140.381 Zhang-Server_TS2-scwrl costs 0 real_cost = -158.376 Zhang-Server_TS2 costs 0 real_cost = -159.254 Zhang-Server_TS1-scwrl costs 0 real_cost = -160.517 Zhang-Server_TS1 costs 0 real_cost = -153.275 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -139.383 UNI-EID_sfst_AL5 costs 0 real_cost = 76.8082 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -83.4179 UNI-EID_sfst_AL4 costs 0 real_cost = 134.916 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -147.243 UNI-EID_sfst_AL3 costs 0 real_cost = 63.0135 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -155.754 UNI-EID_sfst_AL2 costs 0 real_cost = 52.5286 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -78.6069 UNI-EID_sfst_AL1 costs 0 real_cost = 112.175 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -7.61472 UNI-EID_expm_TS1 costs 0 real_cost = -7.60732 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -139.383 UNI-EID_bnmx_TS5 costs 0 real_cost = 76.8082 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -83.4179 UNI-EID_bnmx_TS4 costs 0 real_cost = 134.916 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -147.243 UNI-EID_bnmx_TS3 costs 0 real_cost = 63.0135 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -156.269 UNI-EID_bnmx_TS2 costs 0 real_cost = 52.288 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -78.6069 UNI-EID_bnmx_TS1 costs 0 real_cost = 112.175 SPARKS2_TS5-scwrl costs 0 real_cost = -130.846 SPARKS2_TS5 costs 0 real_cost = -130.802 SPARKS2_TS4-scwrl costs 0 real_cost = -67.2068 SPARKS2_TS4 costs 0 real_cost = -68.1271 SPARKS2_TS3-scwrl costs 0 real_cost = -165.138 SPARKS2_TS3 costs 0 real_cost = -159.643 SPARKS2_TS2-scwrl costs 0 real_cost = -95.5212 SPARKS2_TS2 costs 0 real_cost = -96.6039 SPARKS2_TS1-scwrl costs 0 real_cost = -122.806 SPARKS2_TS1 costs 0 real_cost = -124.398 SP4_TS5-scwrl costs 0 real_cost = -81.8263 SP4_TS5 costs 0 real_cost = -85.0663 SP4_TS4-scwrl costs 0 real_cost = -163.264 SP4_TS4 costs 0 real_cost = -160.634 SP4_TS3-scwrl costs 0 real_cost = -158.534 SP4_TS3 costs 0 real_cost = -156.903 SP4_TS2-scwrl costs 0 real_cost = -95.5212 SP4_TS2 costs 0 real_cost = -96.6039 SP4_TS1-scwrl costs 0 real_cost = -127.646 SP4_TS1 costs 0 real_cost = -126.949 SP3_TS5-scwrl costs 0 real_cost = -125.734 SP3_TS5 costs 0 real_cost = -131.347 SP3_TS4-scwrl costs 0 real_cost = -70.6315 SP3_TS4 costs 0 real_cost = -67.8683 SP3_TS3-scwrl costs 0 real_cost = -156.451 SP3_TS3 costs 0 real_cost = -159.257 SP3_TS2-scwrl costs 0 real_cost = -95.5212 SP3_TS2 costs 0 real_cost = -96.6039 SP3_TS1-scwrl costs 0 real_cost = -126.177 SP3_TS1 costs 0 real_cost = -129.635 SAM_T06_server_TS5-scwrl costs 0 real_cost = 7.59266 SAM_T06_server_TS5 costs 0 real_cost = -31.9415 SAM_T06_server_TS4-scwrl costs 0 real_cost = 12.2358 SAM_T06_server_TS4 costs 0 real_cost = -40.0409 SAM_T06_server_TS3-scwrl costs 0 real_cost = -65.6294 SAM_T06_server_TS3 costs 0 real_cost = -73.7184 SAM_T06_server_TS2-scwrl costs 0 real_cost = -116.907 SAM_T06_server_TS2 costs 0 real_cost = -120.262 SAM_T06_server_TS1-scwrl costs 0 real_cost = -153.277 SAM_T06_server_TS1 costs 0 real_cost = -149.994 SAM-T99_AL5-scwrl costs 0 real_cost = -48.0927 SAM-T99_AL5 costs 0 real_cost = 157.174 SAM-T99_AL4-scwrl costs 0 real_cost = -54.8226 SAM-T99_AL4 costs 0 real_cost = 157.269 SAM-T99_AL3-scwrl costs 0 real_cost = -113.343 SAM-T99_AL3 costs 0 real_cost = 108.191 SAM-T99_AL2-scwrl costs 0 real_cost = -107.875 SAM-T99_AL2 costs 0 real_cost = 113.939 SAM-T99_AL1-scwrl costs 0 real_cost = -96.39 SAM-T99_AL1 costs 0 real_cost = 116.714 SAM-T02_AL5-scwrl costs 0 real_cost = -68.8001 SAM-T02_AL5 costs 0 real_cost = 145.947 SAM-T02_AL4-scwrl costs 0 real_cost = -83.1725 SAM-T02_AL4 costs 0 real_cost = 132.134 SAM-T02_AL3-scwrl costs 0 real_cost = -36.1602 SAM-T02_AL3 costs 0 real_cost = 157.539 SAM-T02_AL2-scwrl costs 0 real_cost = -81.723 SAM-T02_AL2 costs 0 real_cost = 134.617 SAM-T02_AL1-scwrl costs 0 real_cost = -94.0062 SAM-T02_AL1 costs 0 real_cost = 109.435 ROKKY_TS5-scwrl costs 0 real_cost = -134.008 ROKKY_TS5 costs 0 real_cost = -129.22 ROKKY_TS4-scwrl costs 0 real_cost = -142.963 ROKKY_TS4 costs 0 real_cost = -147.043 ROKKY_TS3-scwrl costs 0 real_cost = -145.347 ROKKY_TS3 costs 0 real_cost = -156.552 ROKKY_TS2-scwrl costs 0 real_cost = -105.479 ROKKY_TS2 costs 0 real_cost = -99.1571 ROKKY_TS1-scwrl costs 0 real_cost = -95.9412 ROKKY_TS1 costs 0 real_cost = -98.785 ROBETTA_TS5-scwrl costs 0 real_cost = -135.382 ROBETTA_TS5 costs 0 real_cost = -136.489 ROBETTA_TS4-scwrl costs 0 real_cost = -150.951 ROBETTA_TS4 costs 0 real_cost = -155.016 ROBETTA_TS3-scwrl costs 0 real_cost = -166.174 ROBETTA_TS3 costs 0 real_cost = -171.6 ROBETTA_TS2-scwrl costs 0 real_cost = -152.977 ROBETTA_TS2 costs 0 real_cost = -153.756 ROBETTA_TS1-scwrl costs 0 real_cost = -157.16 ROBETTA_TS1 costs 0 real_cost = -160.998 RAPTOR_TS5-scwrl costs 0 real_cost = -178.539 RAPTOR_TS5 costs 0 real_cost = -176.494 RAPTOR_TS4-scwrl costs 0 real_cost = -112.612 RAPTOR_TS4 costs 0 real_cost = -109.998 RAPTOR_TS3-scwrl costs 0 real_cost = -71.8574 RAPTOR_TS3 costs 0 real_cost = -68.4721 RAPTOR_TS2-scwrl costs 0 real_cost = -151.179 RAPTOR_TS2 costs 0 real_cost = -154.153 RAPTOR_TS1-scwrl costs 0 real_cost = -90.4332 RAPTOR_TS1 costs 0 real_cost = -92.863 RAPTORESS_TS5-scwrl costs 0 real_cost = -166.116 RAPTORESS_TS5 costs 0 real_cost = -163.088 RAPTORESS_TS4-scwrl costs 0 real_cost = -103.956 RAPTORESS_TS4 costs 0 real_cost = -97.343 RAPTORESS_TS3-scwrl costs 0 real_cost = -63.4108 RAPTORESS_TS3 costs 0 real_cost = -58.721 RAPTORESS_TS2-scwrl costs 0 real_cost = -142.133 RAPTORESS_TS2 costs 0 real_cost = -141.194 RAPTORESS_TS1-scwrl costs 0 real_cost = -90.1133 RAPTORESS_TS1 costs 0 real_cost = -91.3037 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -145.695 RAPTOR-ACE_TS5 costs 0 real_cost = -141.092 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -182.723 RAPTOR-ACE_TS4 costs 0 real_cost = -183.815 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -112.512 RAPTOR-ACE_TS3 costs 0 real_cost = -100.871 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -149.755 RAPTOR-ACE_TS2 costs 0 real_cost = -149.694 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -173.25 RAPTOR-ACE_TS1 costs 0 real_cost = -172.26 Pmodeller6_TS5-scwrl costs 0 real_cost = -150.677 Pmodeller6_TS5 costs 0 real_cost = -150.677 Pmodeller6_TS4-scwrl costs 0 real_cost = -144.034 Pmodeller6_TS4 costs 0 real_cost = -144.152 Pmodeller6_TS3-scwrl costs 0 real_cost = -118.752 Pmodeller6_TS3 costs 0 real_cost = -118.752 Pmodeller6_TS2-scwrl costs 0 real_cost = -166.174 Pmodeller6_TS2 costs 0 real_cost = -171.6 Pmodeller6_TS1-scwrl costs 0 real_cost = -150.951 Pmodeller6_TS1 costs 0 real_cost = -155.016 Phyre-2_TS5-scwrl costs 0 real_cost = -137.809 Phyre-2_TS5 costs 0 real_cost = -140.598 Phyre-2_TS4-scwrl costs 0 real_cost = -137.809 Phyre-2_TS4 costs 0 real_cost = -140.598 Phyre-2_TS3-scwrl costs 0 real_cost = -133.346 Phyre-2_TS3 costs 0 real_cost = -135.731 Phyre-2_TS2-scwrl costs 0 real_cost = -133.346 Phyre-2_TS2 costs 0 real_cost = -135.731 Phyre-2_TS1-scwrl costs 0 real_cost = -133.346 Phyre-2_TS1 costs 0 real_cost = -135.731 Phyre-1_TS1-scwrl costs 0 real_cost = -102.444 Phyre-1_TS1 costs 0 real_cost = -102.602 Pcons6_TS5-scwrl costs 0 real_cost = -89.9972 Pcons6_TS5 costs 0 real_cost = -89.9972 Pcons6_TS4-scwrl costs 0 real_cost = -119.238 Pcons6_TS4 costs 0 real_cost = -118.481 Pcons6_TS3-scwrl costs 0 real_cost = -85.8416 Pcons6_TS3 costs 0 real_cost = -85.3744 Pcons6_TS2-scwrl costs 0 real_cost = -117.322 Pcons6_TS2 costs 0 real_cost = -117.322 Pcons6_TS1-scwrl costs 0 real_cost = -89.9972 Pcons6_TS1 costs 0 real_cost = -89.9972 PROTINFO_TS5-scwrl costs 0 real_cost = -148.056 PROTINFO_TS5 costs 0 real_cost = -147.578 PROTINFO_TS4-scwrl costs 0 real_cost = 70.4817 PROTINFO_TS4 costs 0 real_cost = 71.0875 PROTINFO_TS3-scwrl costs 0 real_cost = -146.199 PROTINFO_TS3 costs 0 real_cost = -150.622 PROTINFO_TS2-scwrl costs 0 real_cost = -145.944 PROTINFO_TS2 costs 0 real_cost = -150.192 PROTINFO_TS1-scwrl costs 0 real_cost = -145.019 PROTINFO_TS1 costs 0 real_cost = -144.803 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -140.091 PROTINFO-AB_TS5 costs 0 real_cost = -146.043 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -139.543 PROTINFO-AB_TS4 costs 0 real_cost = -142.808 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -136.89 PROTINFO-AB_TS3 costs 0 real_cost = -140.756 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -144.597 PROTINFO-AB_TS2 costs 0 real_cost = -146.287 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -145.019 PROTINFO-AB_TS1 costs 0 real_cost = -144.803 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -73.7756 NN_PUT_lab_TS1 costs 0 real_cost = -70.3628 MetaTasser_TS5-scwrl costs 0 real_cost = -12.9926 MetaTasser_TS5 costs 0 real_cost = -15.8483 MetaTasser_TS4-scwrl costs 0 real_cost = -51.5325 MetaTasser_TS4 costs 0 real_cost = -52.691 MetaTasser_TS3-scwrl costs 0 real_cost = -58.9488 MetaTasser_TS3 costs 0 real_cost = -61.8209 MetaTasser_TS2-scwrl costs 0 real_cost = -91.2268 MetaTasser_TS2 costs 0 real_cost = -91.9786 MetaTasser_TS1-scwrl costs 0 real_cost = -28.1342 MetaTasser_TS1 costs 0 real_cost = -27.2763 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -139.823 Ma-OPUS-server_TS5 costs 0 real_cost = -140.902 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -83.2219 Ma-OPUS-server_TS4 costs 0 real_cost = -80.7434 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -138.881 Ma-OPUS-server_TS3 costs 0 real_cost = -130.33 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -103.136 Ma-OPUS-server_TS2 costs 0 real_cost = -98.3801 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -170.329 Ma-OPUS-server_TS1 costs 0 real_cost = -171.159 LOOPP_TS5-scwrl costs 0 real_cost = -127.095 LOOPP_TS5 costs 0 real_cost = -118.861 LOOPP_TS4-scwrl costs 0 real_cost = -94.2517 LOOPP_TS4 costs 0 real_cost = -87.7073 LOOPP_TS3-scwrl costs 0 real_cost = -126.452 LOOPP_TS3 costs 0 real_cost = -127.226 LOOPP_TS2-scwrl costs 0 real_cost = -121.141 LOOPP_TS2 costs 0 real_cost = -112.381 LOOPP_TS1-scwrl costs 0 real_cost = -73.7756 LOOPP_TS1 costs 0 real_cost = -70.3628 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -24.0666 Huber-Torda-Server_TS5 costs 0 real_cost = 111.644 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -31.9357 Huber-Torda-Server_TS4 costs 0 real_cost = 66.9203 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -30.2803 Huber-Torda-Server_TS3 costs 0 real_cost = 77.6129 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -111.999 Huber-Torda-Server_TS2 costs 0 real_cost = 35.8948 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -61.0654 Huber-Torda-Server_TS1 costs 0 real_cost = 86.9301 HHpred3_TS1-scwrl costs 0 real_cost = -136.524 HHpred3_TS1 costs 0 real_cost = -134.012 HHpred2_TS1-scwrl costs 0 real_cost = -136.524 HHpred2_TS1 costs 0 real_cost = -134.012 HHpred1_TS1-scwrl costs 0 real_cost = -94.0866 HHpred1_TS1 costs 0 real_cost = -93.2962 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -130.671 GeneSilicoMetaServer_TS5 costs 0 real_cost = -132.244 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -126.845 GeneSilicoMetaServer_TS4 costs 0 real_cost = -127.558 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -147.684 GeneSilicoMetaServer_TS3 costs 0 real_cost = -146.182 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -155.28 GeneSilicoMetaServer_TS2 costs 0 real_cost = -158.556 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -95.2304 GeneSilicoMetaServer_TS1 costs 0 real_cost = -97.1097 Frankenstein_TS1-scwrl costs 0 real_cost = 127.109 Frankenstein_TS1 costs 0 real_cost = 138.536 FUNCTION_TS5-scwrl costs 0 real_cost = -139.497 FUNCTION_TS5 costs 0 real_cost = -133.586 FUNCTION_TS4-scwrl costs 0 real_cost = -135.559 FUNCTION_TS4 costs 0 real_cost = -130.898 FUNCTION_TS3-scwrl costs 0 real_cost = -132.152 FUNCTION_TS3 costs 0 real_cost = -125.155 FUNCTION_TS2-scwrl costs 0 real_cost = -140.837 FUNCTION_TS2 costs 0 real_cost = -141.41 FUNCTION_TS1-scwrl costs 0 real_cost = -135.385 FUNCTION_TS1 costs 0 real_cost = -136.599 FUGUE_AL5-scwrl costs 0 real_cost = 774.956 FUGUE_AL5 costs 0 real_cost = 814.076 FUGUE_AL4-scwrl costs 0 real_cost = 380.917 FUGUE_AL4 costs 0 real_cost = 592.274 FUGUE_AL3-scwrl costs 0 real_cost = 520.348 FUGUE_AL3 costs 0 real_cost = 671.627 FUGUE_AL2-scwrl costs 0 real_cost = 443.348 FUGUE_AL2 costs 0 real_cost = 633.926 FUGUE_AL1-scwrl costs 0 real_cost = -123.173 FUGUE_AL1 costs 0 real_cost = 85.017 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 382.694 FPSOLVER-SERVER_TS5 costs 0 real_cost = 384.223 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 362.88 FPSOLVER-SERVER_TS4 costs 0 real_cost = 363.82 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 349.412 FPSOLVER-SERVER_TS3 costs 0 real_cost = 349.461 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 363.459 FPSOLVER-SERVER_TS2 costs 0 real_cost = 366.226 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 331.826 FPSOLVER-SERVER_TS1 costs 0 real_cost = 333.816 FORTE2_AL5-scwrl costs 0 real_cost = -80.9125 FORTE2_AL5 costs 0 real_cost = 132.553 FORTE2_AL4-scwrl costs 0 real_cost = 11.0374 FORTE2_AL4 costs 0 real_cost = 209.78 FORTE2_AL3-scwrl costs 0 real_cost = -56.1396 FORTE2_AL3 costs 0 real_cost = 159.428 FORTE2_AL2-scwrl costs 0 real_cost = -72.0697 FORTE2_AL2 costs 0 real_cost = 121.621 FORTE2_AL1-scwrl costs 0 real_cost = -81.393 FORTE2_AL1 costs 0 real_cost = 138.526 FORTE1_AL5-scwrl costs 0 real_cost = -86.2882 FORTE1_AL5 costs 0 real_cost = 131.866 FORTE1_AL4-scwrl costs 0 real_cost = -125.728 FORTE1_AL4 costs 0 real_cost = 78.5559 FORTE1_AL3-scwrl costs 0 real_cost = -99.8045 FORTE1_AL3 costs 0 real_cost = 118.762 FORTE1_AL2-scwrl costs 0 real_cost = -75.8728 FORTE1_AL2 costs 0 real_cost = 116.162 FORTE1_AL1-scwrl costs 0 real_cost = -79.9893 FORTE1_AL1 costs 0 real_cost = 138.366 FOLDpro_TS5-scwrl costs 0 real_cost = -154.648 FOLDpro_TS5 costs 0 real_cost = -151.823 FOLDpro_TS4-scwrl costs 0 real_cost = -104.922 FOLDpro_TS4 costs 0 real_cost = -100.292 FOLDpro_TS3-scwrl costs 0 real_cost = -87.2505 FOLDpro_TS3 costs 0 real_cost = -84.4846 FOLDpro_TS2-scwrl costs 0 real_cost = 32.0637 FOLDpro_TS2 costs 0 real_cost = 27.7579 FOLDpro_TS1-scwrl costs 0 real_cost = -188.288 FOLDpro_TS1 costs 0 real_cost = -192.892 FAMS_TS5-scwrl costs 0 real_cost = -129.727 FAMS_TS5 costs 0 real_cost = -136.344 FAMS_TS4-scwrl costs 0 real_cost = -152.759 FAMS_TS4 costs 0 real_cost = -144.208 FAMS_TS3-scwrl costs 0 real_cost = -152.075 FAMS_TS3 costs 0 real_cost = -152.085 FAMS_TS2-scwrl costs 0 real_cost = -145.415 FAMS_TS2 costs 0 real_cost = -148.627 FAMS_TS1-scwrl costs 0 real_cost = -174.734 FAMS_TS1 costs 0 real_cost = -168.717 FAMSD_TS5-scwrl costs 0 real_cost = -140.087 FAMSD_TS5 costs 0 real_cost = -140.763 FAMSD_TS4-scwrl costs 0 real_cost = -163.733 FAMSD_TS4 costs 0 real_cost = -161.296 FAMSD_TS3-scwrl costs 0 real_cost = -144.838 FAMSD_TS3 costs 0 real_cost = -149.661 FAMSD_TS2-scwrl costs 0 real_cost = -143.261 FAMSD_TS2 costs 0 real_cost = -142.141 FAMSD_TS1-scwrl costs 0 real_cost = -144.37 FAMSD_TS1 costs 0 real_cost = -149.515 Distill_TS5-scwrl costs 0 real_cost = 534.712 Distill_TS4-scwrl costs 0 real_cost = 534.95 Distill_TS3-scwrl costs 0 real_cost = 546.433 Distill_TS2-scwrl costs 0 real_cost = 535.143 Distill_TS1-scwrl costs 0 real_cost = 494.208 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -103.525 CaspIta-FOX_TS5 costs 0 real_cost = -114.195 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -147.525 CaspIta-FOX_TS4 costs 0 real_cost = -156.671 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -84.292 CaspIta-FOX_TS3 costs 0 real_cost = -86.6049 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -108.906 CaspIta-FOX_TS2 costs 0 real_cost = -112.513 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -138.385 CaspIta-FOX_TS1 costs 0 real_cost = -153.725 CPHmodels_TS1-scwrl costs 0 real_cost = -93.5012 CPHmodels_TS1 costs 0 real_cost = -87.2028 CIRCLE_TS5-scwrl costs 0 real_cost = -140.793 CIRCLE_TS5 costs 0 real_cost = -139.814 CIRCLE_TS4-scwrl costs 0 real_cost = -152.759 CIRCLE_TS4 costs 0 real_cost = -144.208 CIRCLE_TS3-scwrl costs 0 real_cost = -127.027 CIRCLE_TS3 costs 0 real_cost = -120.457 CIRCLE_TS2-scwrl costs 0 real_cost = -145.415 CIRCLE_TS2 costs 0 real_cost = -148.627 CIRCLE_TS1-scwrl costs 0 real_cost = -152.075 CIRCLE_TS1 costs 0 real_cost = -152.085 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -152.72 Bilab-ENABLE_TS5 costs 0 real_cost = -152.72 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -135.879 Bilab-ENABLE_TS4 costs 0 real_cost = -135.869 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -162.075 Bilab-ENABLE_TS3 costs 0 real_cost = -161.883 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -111.006 Bilab-ENABLE_TS2 costs 0 real_cost = -111.006 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -146.601 Bilab-ENABLE_TS1 costs 0 real_cost = -146.601 BayesHH_TS1-scwrl costs 0 real_cost = -126.577 BayesHH_TS1 costs 0 real_cost = -122.786 ABIpro_TS5-scwrl costs 0 real_cost = 307.061 ABIpro_TS5 costs 0 real_cost = 306.928 ABIpro_TS4-scwrl costs 0 real_cost = 300.961 ABIpro_TS4 costs 0 real_cost = 300.961 ABIpro_TS3-scwrl costs 0 real_cost = 314.996 ABIpro_TS3 costs 0 real_cost = 314.999 ABIpro_TS2-scwrl costs 0 real_cost = 305.583 ABIpro_TS2 costs 0 real_cost = 305.587 ABIpro_TS1-scwrl costs 0 real_cost = 304.452 ABIpro_TS1 costs 0 real_cost = 304.495 3Dpro_TS5-scwrl costs 0 real_cost = -85.9511 3Dpro_TS5 costs 0 real_cost = -90.7518 3Dpro_TS4-scwrl costs 0 real_cost = -96.5152 3Dpro_TS4 costs 0 real_cost = -94.4623 3Dpro_TS3-scwrl costs 0 real_cost = 314.874 3Dpro_TS3 costs 0 real_cost = 312.419 3Dpro_TS2-scwrl costs 0 real_cost = -50.2279 3Dpro_TS2 costs 0 real_cost = -44.3396 3Dpro_TS1-scwrl costs 0 real_cost = -188.111 3Dpro_TS1 costs 0 real_cost = -194.181 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -173.573 3D-JIGSAW_TS5 costs 0 real_cost = -169.003 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -126.898 3D-JIGSAW_TS4 costs 0 real_cost = -116.875 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -166.819 3D-JIGSAW_TS3 costs 0 real_cost = -155.473 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -168.347 3D-JIGSAW_TS2 costs 0 real_cost = -160.592 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -155.658 3D-JIGSAW_TS1 costs 0 real_cost = -144.762 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -190.655 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -180.108 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -166.623 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -166.548 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -175.322 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -176.566 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -172.922 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -172.144 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -176.908 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -176.28 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -161.928 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -161.794 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -156.127 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -156.127 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -161.805 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -161.591 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -161.384 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -161.736 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -184.779 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -184.882 robetta-model5.pdb.gz costs 0 real_cost = -136.489 robetta-model4.pdb.gz costs 0 real_cost = -155.016 robetta-model3.pdb.gz costs 0 real_cost = -171.6 robetta-model2.pdb.gz costs 0 real_cost = -153.756 robetta-model1.pdb.gz costs 0 real_cost = -160.998 T0313.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -162.996 T0313.try5-opt2.pdb.gz costs 0 real_cost = -164.416 T0313.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = -166.796 T0313.try5-opt1.pdb.gz costs 0 real_cost = -161.466 T0313.try5-opt1-scwrl.pdb.gz costs 0 real_cost = -159.519 T0313.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -165.906 T0313.try4-opt2.pdb.gz costs 0 real_cost = -161.338 T0313.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -159.694 T0313.try4-opt1.pdb.gz costs 0 real_cost = -161.017 T0313.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -162.291 T0313.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -163.594 T0313.try3-opt2.pdb.gz costs 0 real_cost = -162.052 T0313.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -165.754 T0313.try3-opt1.pdb.gz costs 0 real_cost = -158.279 T0313.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -158.171 T0313.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -147.781 T0313.try2-opt2.pdb.gz costs 0 real_cost = -148.55 T0313.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -148.933 T0313.try2-opt1.pdb.gz costs 0 real_cost = -148.262 T0313.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -147.445 T0313.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -156.54 T0313.try1-opt2.pdb.gz costs 0 real_cost = -158.764 T0313.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -156.564 T0313.try1-opt1.pdb.gz costs 0 real_cost = -154.495 T0313.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -153.574 ../model5.ts-submitted costs 0 real_cost = -158.812 ../model4.ts-submitted costs 0 real_cost = -148.447 ../model3.ts-submitted costs 0 real_cost = -161.817 ../model2.ts-submitted costs 0 real_cost = -161.437 ../model1.ts-submitted costs 0 real_cost = -164.501 align5 costs 0 real_cost = -39.0569 align3 costs 0 real_cost = -47.9664 align2 costs 0 real_cost = -91.305 align1 costs 0 real_cost = -111.022 T0313.try1-opt2.pdb costs 0 real_cost = -158.764 model5-scwrl costs 0 real_cost = -158.69 model5.ts-submitted costs 0 real_cost = -158.812 model4-scwrl costs 0 real_cost = -147.359 model4.ts-submitted costs 0 real_cost = -148.447 model3-scwrl costs 0 real_cost = -159.885 model3.ts-submitted costs 0 real_cost = -161.817 model2-scwrl costs 0 real_cost = -163.364 model2.ts-submitted costs 0 real_cost = -161.437 model1-scwrl costs 0 real_cost = -161.213 model1.ts-submitted costs 0 real_cost = -164.495 2h58A costs 0 real_cost = -882.4 # command:CPU_time= 2653.2 sec, elapsed time= 3367 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty