# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bg2 325 5.73e-39 1bg2 c.37.1.9 32189 1vfvA 366 5.85e-36 c.37.1.9 108592 1x88A 359 7.23e-36 1f9vA 347 4.16e-34 1bg2 c.37.1.9 59745 1ry6A 360 1.71e-32 c.37.1.9 98090 1odfA 290 1.87e-01 c.37.1.6 92782 1d2mA 665 1.95e-01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1yrbA 262 2.73e-01 1xw8A 252 9.44e-01 1c4oA 664 1.41e+00 1d2mA c.37.1.19,c.37.1.19 32415,32416 1f60A 458 1.46e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1eu1A 780 1.78e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1bouB 302 2.01e+00 1bouB c.56.6.1 33859 2ghpA 292 2.05e+00 2akaB 299 2.49e+00 1g291 372 3.14e+00 1g291 1vf8A 377 3.53e+00 3bamA 213 3.54e+00 1bam c.52.1.3 33288 1ihuA 589 3.66e+00 c.37.1.10,c.37.1.10 62394,62395 2cdnA 201 3.87e+00 1lv7A 257 4.49e+00 c.37.1.20 78232 1h65A 270 4.96e+00 c.37.1.8 65640 1qf9A 194 5.07e+00 1zin c.37.1.1 31848 2fji1 399 6.00e+00 1wi6A 88 6.88e+00 2napA 723 7.03e+00 2napA b.52.2.2,c.81.1.1 26926,35334 1u9iA 519 7.68e+00 1gpjA 404 8.26e+00 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2azeA 155 8.83e+00 1g2rA 100 9.12e+00 1g2rA d.192.1.1 60231 1fnnA 389 9.26e+00 1fnnA a.4.5.11,c.37.1.20 16129,32426 1ooyA 481 9.55e+00 c.124.1.3,c.124.1.2 93388,93389 1qhlA 227 9.97e+00 1qhlA c.37.1.12 32382 2fpmA 322 1.07e+01 2aiqA 231 1.10e+01 1m33A 258 1.15e+01 c.69.1.26 78514 1ve1A 304 1.16e+01 1j8mF 297 1.16e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1q5dA 419 1.17e+01 a.104.1.1 95891 1w36B 1180 1.18e+01 2ahuA 531 1.31e+01 1gvnB 287 1.35e+01 c.37.1.21 76354 1w7jA 795 1.47e+01 2aq4A 434 1.49e+01 1h6kZ 98 1.55e+01 d.58.7.1 60686 1ok7A 366 1.77e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1np3A 338 1.82e+01 a.100.1.2,c.2.1.6 85946,85947 1eswA 500 1.88e+01 1cwyA c.1.8.1 59500 1ehiA 377 1.91e+01 1iow c.30.1.2,d.142.1.1 31716,41484 2fx0A 201 1.98e+01 1r9cA 139 1.98e+01 d.32.1.2 97255 1g8pA 350 2.05e+01 1g8pA c.37.1.20 60376 1ye8A 178 2.07e+01 2bycA 137 2.08e+01 1i19A 561 2.19e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1mr3F 181 2.21e+01 c.37.1.8 79422 2a5yB 549 2.22e+01 1ldjA 760 2.32e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1jjvA 206 2.32e+01 c.37.1.1 71698 2cr9A 139 2.32e+01 1wmhA 89 2.39e+01 1xd8A 289 2.46e+01 1qdeA 224 2.53e+01 1qvaA c.37.1.19 32410 1z5zA 271 2.59e+01 1i6pA 220 2.70e+01 1ddzA c.53.2.1 61848 1ed1A 135 2.74e+01 1hiwA a.61.1.1 18130 3tmkA 216 2.81e+01 3tmkA c.37.1.1 31920 1w9iA 770 2.94e+01 1ls1A 295 3.00e+01 a.24.13.1,c.37.1.10 78170,78171 1pzgA 331 3.09e+01 c.2.1.5,d.162.1.1 95425,95426 1ycdA 243 3.12e+01 1kafA 108 3.13e+01 d.199.1.1 68372 1tueA 212 3.19e+01 c.37.1.20 107323 1uluA 261 3.26e+01 1v5eA 590 3.29e+01 1yyaA 250 3.33e+01 1yqtA 538 3.43e+01 1vyiA 112 3.54e+01 1smd 496 3.75e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1hl2A 297 3.79e+01 c.1.10.1 83581 2bdeA 470 3.83e+01 2ccjA 205 3.83e+01 1rypJ 204 3.85e+01 d.153.1.4 41878 1xkyA 301 3.88e+01 1z83A 196 3.92e+01 1knqA 175 3.98e+01 c.37.1.17 72786 1oywA 523 4.02e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1f5nA 592 4.10e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 2bkaA 242 4.11e+01 1i1nA 226 4.19e+01 c.66.1.7 71102 1efvA 315 4.36e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 1ej0A 180 4.37e+01 1ej0A c.66.1.2 34179 1us5A 314 4.45e+01 c.94.1.1 99856 1j5pA 253 4.48e+01 d.81.1.3,c.2.1.3 71577,83092 1dg9A 157 4.52e+01 1dg9A c.44.1.1 32637 1o5xA 248 4.52e+01 c.1.1.1 92528 1dhn 121 4.53e+01 1dhn d.96.1.3 40663 1bif 469 4.54e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1xewY 172 4.56e+01 1jflA 228 4.57e+01 c.78.2.1,c.78.2.1 71656,71657 2cbzA 237 4.59e+01 1s7kA 182 4.61e+01 2gdjA 264 4.80e+01 1bueA 265 4.82e+01 1btl e.3.1.1 42727 1p1xA 260 4.85e+01 c.1.10.1 104060 2g3bA 208 4.87e+01 1vns 609 4.88e+01 1vns a.111.1.3 19061 1xq6A 253 4.92e+01 1w6uA 302 4.98e+01 1z2wA 192 5.07e+01 1xwwA 157 5.25e+01 1w5qA 337 5.34e+01 1jb7A 495 5.36e+01 1otcA b.40.4.3,b.40.4.3,b.40.4.3 62836,62837,62838 1qf5A 431 5.39e+01 1adeA c.37.1.10 32212 1ujnA 348 5.40e+01 e.22.1.1 99460 1qhfA 240 5.47e+01 1qhfA c.60.1.1 33960 1cp2A 269 5.48e+01 1cp2A c.37.1.10 32269 1oyc 400 5.61e+01 1oyc c.1.4.1 28603 2ez9A 603 5.74e+01 1zs9A 261 5.76e+01 1jyeA 349 5.76e+01 c.93.1.1 67455 1oxxK 353 5.79e+01 b.40.6.3,c.37.1.12 93715,93716 1gadO 330 5.90e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 2irfG 113 5.91e+01 2irfG a.4.5.23 16185 1eqfA 280 5.96e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1dekA 241 6.01e+01 1dekA c.37.1.1 31842 1dl5A 317 6.04e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 2g03A 194 6.07e+01 1kqpA 271 6.08e+01 c.26.2.1 72883 1tljA 213 6.08e+01 d.282.1.1 107126 1q0uA 219 6.13e+01 c.37.1.19 95512 1t95A 240 6.20e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1wucA 250 6.34e+01 1evyA 366 6.40e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1rdfA 267 6.40e+01 c.108.1.3 104884 2btoA 473 6.58e+01 1tmxA 293 6.59e+01 1wohA 305 6.62e+01 c.42.1.1 109446 1r2rA 248 6.62e+01 c.1.1.1 96875 1hf8A 289 6.77e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1ikpA 613 6.83e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1dofA 403 6.85e+01 1c3cA a.127.1.1 19429 2gd9A 189 6.86e+01 1tn6A 382 6.87e+01 2fh5A 185 6.89e+01 1kjwA 295 6.91e+01 b.34.2.1,c.37.1.1 68643,68644 1vh4A 435 6.92e+01 b.80.6.1 100640 1d2nA 272 7.15e+01 1d2nA c.37.1.20 32428 1xeoA 168 7.16e+01 1n7kA 234 7.17e+01 c.1.10.1 85374 2d00A 109 7.31e+01 2fz4A 237 7.31e+01 1mf7A 194 7.34e+01 c.62.1.1 84937 1y51A 88 7.47e+01 1q7zA 566 7.50e+01 c.1.21.2,c.1.26.1 96090,96091 1a3c 181 7.66e+01 1a3c c.61.1.1 34095 1budA 197 7.90e+01 1atlA d.92.1.9 40328 1mgtA 174 7.93e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1dmgA 225 7.95e+01 1dmgA c.22.1.1 31036 2fnaA 357 8.22e+01 1mkfA 382 8.24e+01 b.116.1.1 79232 2cvhA 220 8.28e+01 1k4iA 233 8.32e+01 d.115.1.2 72056 1fxkC 133 8.35e+01 1fxkC a.2.5.1 15702 2bbsA 290 8.41e+01 1k5cA 335 8.45e+01 b.80.1.3 72076 2ak3A 226 8.46e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1hx0A 496 8.55e+01 b.71.1.1,c.1.8.1 61346,61347 1ptf 88 8.55e+01 1ptf d.94.1.1 40549 1bgvA 449 8.62e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 1ky3A 182 8.65e+01 c.37.1.8 73193 1ltqA 301 8.66e+01 c.108.1.9,c.37.1.1 78208,78209 1ppjD 241 8.69e+01 a.3.1.3,f.23.11.1 104258,104259 1dq3A 454 8.75e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1dljA 402 8.77e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1x6vA 630 8.85e+01 1jalA 363 8.86e+01 c.37.1.8,d.15.10.2 84138,84139 1g6hA 257 8.89e+01 1gajA c.37.1.12 60318 1sq5A 308 8.99e+01 c.37.1.6 105882 1mv8A 436 8.99e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130