# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 5.09e+00 2al3A 90 5.21e+00 1b59A 370 5.35e+00 1bn5 a.4.5.25,d.127.1.1 16225,41162 1bn5 478 6.87e+00 1bn5 a.4.5.25,d.127.1.1 16224,41161 1b6a 478 6.92e+00 1bn5 a.4.5.25,d.127.1.1 16223,41160 1c1yB 77 1.13e+01 1c1yB d.15.1.5 37618 1wm3A 72 1.29e+01 1guaB 81 1.35e+01 1c1yB d.15.1.5 37619 1wrvA 308 1.41e+01 1i1kA 309 1.56e+01 1daaA e.17.1.1 61533 1wn2A 121 1.60e+01 1a3gA 308 1.84e+01 1daaA e.17.1.1 43286 1j3kA 280 1.90e+01 c.71.1.1 84070 1rfa 79 1.96e+01 1c1yB d.15.1.5 37620 1ys7A 233 2.18e+01 1wvhA 134 2.24e+01 1kgqA 274 2.32e+01 b.81.1.2 72447 2tdt 274 2.32e+01 3tdt b.81.1.2 28054 3tdt 274 2.32e+01 3tdt b.81.1.2 28053 2cvjA 180 2.32e+01 2eifA 136 2.38e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1tdtA 259 2.47e+01 3tdt b.81.1.2 28055 1b1yA 500 2.93e+01 1byb c.1.8.1 28796 1iz6A 138 3.03e+01 b.34.5.2,b.40.4.5 76976,76977 2c0zA 216 3.16e+01 1gzqA 300 3.27e+01 b.1.1.2,d.19.1.1 70818,70819 1iyeA 309 3.30e+01 e.17.1.1 83786 1vmjA 151 3.31e+01 1vjoA 393 3.32e+01 c.67.1.3 100827 2g7jA 124 3.45e+01 2coaA 125 3.47e+01 1mioB 458 3.50e+01 1qguB c.92.2.3 35602 1kv0A 66 3.53e+01 g.3.7.1 91040 1pv9A 348 3.56e+01 c.55.2.1,d.127.1.1 95157,95158 2gnxA 365 3.57e+01 2ffyA 358 3.68e+01 2blsA 358 3.81e+01 1gceA e.3.1.1 42747 3hhrB 203 3.96e+01 1axiB b.1.2.1,b.1.2.1 22005,22006 1xezA 721 4.13e+01 1fsyA 358 4.19e+01 1gceA e.3.1.1 60016 1wddS 128 4.20e+01 1l0gA 358 4.27e+01 e.3.1.1 73400 1h1wA 289 4.30e+01 d.144.1.7 83460 1gskA 513 4.33e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1sesA 421 4.36e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 1xkgA 312 4.51e+01 1pi4A 358 4.57e+01 e.3.1.1 94700 1rybA 212 4.67e+01 c.56.3.1 98098 2absA 383 4.75e+01 1dgmA 363 4.77e+01 1bx4A c.72.1.1 34936 1euvB 86 4.95e+01 1a5r d.15.1.1 37598 1q33A 292 4.97e+01 d.113.1.1 95657 1uu3A 310 5.01e+01 d.144.1.7 99999 2yhx 457 5.06e+01 2yhx i.12.1.1 46024 1914 232 5.09e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1qvjA 292 5.12e+01 d.113.1.1 96431 1zdrA 164 5.17e+01 2bgcA 238 5.29e+01 1bkb 136 5.35e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1fwyA 331 5.37e+01 1fwyA b.81.1.4,c.68.1.5 28064,34522 1nwbA 124 5.41e+01 b.124.1.1 86296 1pmhX 185 5.46e+01 b.18.1.18 104193 1kvlA 358 5.51e+01 e.3.1.1 73062 1n71A 180 5.54e+01 d.108.1.1 85370 1b87A 181 5.58e+01 1b87A d.108.1.1 40797 1wbiA 129 5.58e+01 1zncA 266 5.64e+01 2cba b.74.1.1 27955 1vphA 149 5.74e+01 1qcwA 410 5.75e+01 1gox c.1.4.1 28622 1hpgA 187 5.82e+01 1qq4A b.47.1.1 25813 1iq6A 134 5.98e+01 d.38.1.4 76755 1b01A 45 6.25e+01 2cpgA a.43.1.3 17458 1kgsA 225 6.34e+01 a.4.6.1,c.23.1.1 68596,68597 1h8uA 117 6.38e+01 1h8uA d.169.1.1 60793 1kbjA 412 6.44e+01 c.1.4.1 72280 1gjuA 637 6.51e+01 b.71.1.1,c.1.8.1 60580,60581 1q42A 201 6.51e+01 d.17.4.2 95776 1cov3 238 6.53e+01 1aym3 2d0oB 125 6.64e+01 1ci3M 249 6.64e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 1jrkA 156 6.79e+01 d.113.1.1 71827 1ny4A 82 6.85e+01 b.40.4.5 92316 1ltdA 506 6.93e+01 1gox c.1.4.1,d.120.1.1 28618,41086 1r6fA 310 7.05e+01 e.46.1.1 97149 1yduA 170 7.09e+01 1fcbA 511 7.14e+01 1gox c.1.4.1,d.120.1.1 28620,41087 1gqoN 143 7.19e+01 c.23.13.1 76308 1fxjA 331 7.19e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1hv9A 456 7.22e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1qgvA 142 7.33e+01 1qgvA c.47.1.8 33056 1ejxC 567 7.46e+01 b.92.1.1,c.1.9.2 83184,83185 1bco 327 7.55e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1vizA 240 7.58e+01 c.1.4.1 100784 1gqoI 143 7.64e+01 c.23.13.1 76303 1gqoO 143 7.64e+01 c.23.13.1 76309 1gqoP 143 7.64e+01 c.23.13.1 76310 2gh1A 301 7.68e+01 1gqoK 143 7.71e+01 c.23.13.1 76305 1gqoB 143 7.71e+01 c.23.13.1 76296 1a5mC 566 7.78e+01 1ubpC b.92.1.1,c.1.9.2 28423,29045 1a5kC 566 7.78e+01 1ubpC b.92.1.1,c.1.9.2 28425,29047 1ejrC 567 7.79e+01 1ubpC b.92.1.1,c.1.9.2 28420,29042 1a5lC 566 7.84e+01 1ubpC b.92.1.1,c.1.9.2 28426,29048 1gqoC 143 7.84e+01 c.23.13.1 76297 1gqoJ 143 7.91e+01 c.23.13.1 76304 1gqoQ 143 7.91e+01 c.23.13.1 76311 1gqoM 143 7.92e+01 c.23.13.1 76307 1gqoE 143 7.99e+01 c.23.13.1 76299 1gqoG 143 7.99e+01 c.23.13.1 76301 1vcoA 550 8.00e+01 c.23.16.1,c.37.1.10 108508,108509 1djtA 64 8.03e+01 1aho g.3.7.1 44132 1gqoD 143 8.06e+01 c.23.13.1 76298 1gqoU 143 8.06e+01 c.23.13.1 76315 2cxhA 217 8.08e+01 1b1a 137 8.10e+01 1be1 c.23.6.1 31242 1gqoV 143 8.17e+01 c.23.13.1 76316 1jkfA 533 8.19e+01 c.2.1.3,d.81.1.3 71700,71701 1so7A 382 8.20e+01 2cpgA 45 8.20e+01 2cpgA a.43.1.3 17455 1kp0A 402 8.21e+01 c.55.2.1,d.127.1.1 72834,72835 1k26A 156 8.26e+01 d.113.1.1 72003 1yh6A 179 8.34e+01 1b78A 193 8.53e+01 1b78A c.51.4.1 33221 1v6fA 151 8.76e+01 d.109.1.2 108395 1h7mA 102 8.76e+01 d.79.3.1 83485 1gqoX 143 8.89e+01 c.23.13.1 76317