# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 2.67e-05 1wrvA 308 8.99e-01 1vkmA 297 2.43e+00 c.138.1.1 108670 1ys7A 233 2.67e+00 1z4rA 168 2.74e+00 2dcnA 311 2.97e+00 2gnxA 365 3.44e+00 2al3A 90 4.62e+00 1gs5A 258 5.08e+00 c.73.1.2 70395 2f96A 224 5.75e+00 1fukA 165 6.11e+00 1fukA c.37.1.19 32409 1iyeA 309 7.43e+00 e.17.1.1 83786 1r6fA 310 8.28e+00 e.46.1.1 97149 1vphA 149 8.29e+00 1p5tA 127 8.52e+00 b.55.1.2 94148 1ua4A 455 8.69e+00 c.72.1.3 99128 1n1bA 549 8.77e+00 a.102.4.1,a.128.1.3 79799,79800 1hqkA 154 9.16e+00 c.16.1.1 65902 1wzoA 246 1.01e+01 1ub0A 258 1.08e+01 c.72.1.2 88394 3sdhA 146 1.21e+01 3sdhA a.1.1.2 14984 1vmfA 145 1.23e+01 1sffA 426 1.24e+01 c.67.1.4 105482 1y97A 238 1.28e+01 1vcoA 550 1.40e+01 c.23.16.1,c.37.1.10 108508,108509 1k66A 149 1.43e+01 c.23.1.1 90941 1xklA 273 1.43e+01 2boqA 331 1.47e+01 1i8dA 213 1.48e+01 b.43.4.3,b.43.4.3 61953,61954 1it2A 146 1.57e+01 a.1.1.2 66365 1v6tA 255 1.58e+01 1xngA 268 1.58e+01 2bitX 165 1.59e+01 1f89A 291 1.67e+01 d.160.1.1 64988 1u9cA 224 1.68e+01 1y4tA 322 1.71e+01 1siqA 392 1.72e+01 a.29.3.1,e.6.1.1 105585,105586 1auiB 169 1.79e+01 1auiB a.39.1.5 17325 2f06A 144 1.81e+01 1c3mA 147 1.83e+01 1jotA b.77.3.1 27983 2b99A 156 1.88e+01 1nrwA 288 1.91e+01 c.108.1.10 86128 1hl9A 449 1.97e+01 b.71.1.3,c.1.8.11 90650,90651 1vgjA 184 2.00e+01 1cs1A 386 2.01e+01 1ibjA c.67.1.3 34399 2ex5A 207 2.07e+01 1nzyA 269 2.12e+01 1nzyA c.14.1.3 30903 1j6oA 268 2.19e+01 c.1.9.12 77088 1chmA 401 2.42e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1kgsA 225 2.45e+01 a.4.6.1,c.23.1.1 68596,68597 1pvvA 315 2.47e+01 c.78.1.1,c.78.1.1 95190,95191 1yndA 165 2.53e+01 1t0bA 252 2.59e+01 c.23.16.6 106199 1n46A 258 2.60e+01 a.123.1.1 85315 1rkuA 206 2.62e+01 c.108.1.11 97627 1gxjA 186 2.63e+01 d.215.1.1 70707 1zcxA 178 2.66e+01 1pujA 282 2.73e+01 c.37.1.8 88294 1xrtA 467 2.76e+01 1w41A 101 2.76e+01 1w50A 411 2.80e+01 b.50.1.2 109173 1fonA 240 2.82e+01 5ptp b.47.1.2 26231 1vmjA 151 2.88e+01 1u8sA 192 2.91e+01 d.58.18.5,d.58.18.5 107737,107738 2dexX 671 2.91e+01 1oxxK 353 2.95e+01 b.40.6.3,c.37.1.12 93715,93716 1vkcA 158 2.97e+01 2ffyA 358 3.07e+01 1sc6A 404 3.11e+01 2cxxA 190 3.16e+01 1j5wA 298 3.21e+01 d.104.1.1 71589 1wfyA 104 3.26e+01 1dmhA 311 3.31e+01 1dmhA b.3.6.1 22633 1gheA 177 3.31e+01 d.108.1.1 76222 1im5A 180 3.34e+01 c.33.1.3 66211 1z2lA 423 3.37e+01 1qgdA 662 3.37e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1np6A 174 3.37e+01 c.37.1.10 85954 1va0A 239 3.39e+01 2f1rA 171 3.41e+01 2cvjA 180 3.47e+01 1kdgA 546 3.59e+01 c.3.1.2,d.16.1.1 77337,77338 1ydmA 187 3.63e+01 1c1yB 77 3.65e+01 1c1yB d.15.1.5 37618 1vl4A 447 3.70e+01 d.283.1.1 108718 1qstA 160 3.75e+01 1yghA d.108.1.1 40804 1gwmA 153 3.78e+01 b.18.1.19 83348 1krs 120 3.79e+01 1krs b.40.4.1 25256 1zymA 258 3.80e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1w8sA 263 4.25e+01 1vdnA 162 4.28e+01 2b8lA 405 4.28e+01 1dywA 173 4.40e+01 2cpl b.62.1.1 27505 1cxyA 90 4.41e+01 1cyo d.120.1.1 41085 2f71A 298 4.73e+01 1vd4A 62 4.78e+01 1zkjA 359 4.94e+01 1kzfA 230 5.02e+01 d.108.1.3 73354 1i60A 278 5.03e+01 c.1.15.4 71118 1qhqA 140 5.03e+01 1qhqA b.6.1.1 63326 1lxjA 104 5.06e+01 d.58.48.1 84736 1moq 368 5.15e+01 1moq c.80.1.1 35302 1wekA 217 5.21e+01 1pbyA 489 5.33e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1ui5A 215 5.41e+01 a.4.1.9,a.121.1.1 107856,107857 8abp 306 5.44e+01 8abp c.93.1.1 35647 1vjqA 79 5.45e+01 k.43.1.1 100830 1pq7A 224 5.50e+01 b.47.1.2 95002 1ohvA 472 5.64e+01 c.67.1.4 93031 1ekqA 272 5.70e+01 1c3qA c.72.1.2 34941 1x3mA 415 5.75e+01 1m3sA 186 5.79e+01 c.80.1.3 78573 1p1xA 260 5.91e+01 c.1.10.1 104060 1pt6A 213 5.93e+01 c.62.1.1 95091 1iejA 332 5.98e+01 1nnt c.94.1.2 62328 1e0cA 271 6.04e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1p90A 145 6.07e+01 c.55.5.2 94377 1kicA 339 6.11e+01 c.70.1.1 72510 1y9wA 140 6.12e+01 1wy2A 351 6.15e+01 1v33A 366 6.16e+01 d.264.1.1 100278 1xo5A 183 6.19e+01 1wn2A 121 6.25e+01 1xzoA 174 6.30e+01 1yqhA 109 6.30e+01 1zkiA 133 6.37e+01 3daaA 277 6.47e+01 1daaA e.17.1.1 43272 1kqpA 271 6.52e+01 c.26.2.1 72883 1wguA 136 6.52e+01 1p5dX 463 6.54e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2gh1A 301 6.66e+01 1e1oA 504 6.66e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1oa2A 218 6.70e+01 b.29.1.11 86721 1vljA 407 6.97e+01 e.22.1.2 108832 1vjvA 415 7.05e+01 d.3.1.9 108632 1tmxA 293 7.08e+01 8rucI 123 7.10e+01 1rboC d.73.1.1 39629 2a8jA 420 7.13e+01 1j1lA 290 7.21e+01 b.82.1.12 90766 1r8sA 164 7.24e+01 c.37.1.8 97247 2amlA 373 7.30e+01 1h12A 405 7.32e+01 a.102.1.2 83447 2gfnA 209 7.56e+01 1g61A 228 7.69e+01 1g61A d.126.1.1 41126 1v5vA 401 7.69e+01 1knyA 253 7.70e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1b9mA 265 7.72e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1y7rA 133 7.89e+01 1nb8A 353 7.92e+01 d.3.1.9 80385 2c4wA 176 8.01e+01 1s3sG 127 8.02e+01 d.15.1.2 98457 1h05A 146 8.02e+01 c.23.13.1 76433 1mh1 186 8.10e+01 1eesA c.37.1.8 32002 2g09A 297 8.12e+01 1dozA 309 8.32e+01 1ak1 c.92.1.1 35592 1s9uA 207 8.34e+01 a.184.1.1 105390 1t2bA 397 8.35e+01 1u2zA 433 8.44e+01 c.66.1.31 107626 2d2mC 147 8.47e+01 1r6uA 437 8.52e+01 c.26.1.1 97163 1x3lA 440 8.53e+01 1b00A 127 8.61e+01 3chy c.23.1.1 31122 1o3yA 166 8.70e+01 c.37.1.8 86618 1ni9A 338 8.96e+01 e.7.1.2 85739