# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 1.61e-05 1rkuA 206 3.70e+00 c.108.1.11 97627 1ys7A 233 4.13e+00 1hf2A 210 6.25e+00 1hf2A b.80.3.1,c.102.1.1 60992,60993 2c0zA 216 6.34e+00 1kv0A 66 6.99e+00 g.3.7.1 91040 2al3A 90 7.23e+00 1upiA 225 7.35e+00 b.82.1.1 99757 1c1yB 77 9.04e+00 1c1yB d.15.1.5 37618 1i5pA 633 1.09e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1zdrA 164 1.13e+01 1xxlA 239 1.16e+01 1oa2A 218 1.18e+01 b.29.1.11 86721 1kgsA 225 1.19e+01 a.4.6.1,c.23.1.1 68596,68597 1uu3A 310 1.28e+01 d.144.1.7 99999 2axwA 134 1.36e+01 2c6cA 707 1.38e+01 1nzaA 103 1.47e+01 d.58.5.2 86444 1z9lA 128 1.57e+01 2gnxA 365 1.63e+01 1wosA 364 1.66e+01 b.44.2.1,d.250.1.1 109468,109469 2fueA 262 1.80e+01 1qhqA 140 1.88e+01 1qhqA b.6.1.1 63326 1kv7A 488 1.93e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1euvB 86 1.94e+01 1a5r d.15.1.1 37598 1vizA 240 1.96e+01 c.1.4.1 100784 2cvjA 180 1.96e+01 1aym3 238 2.06e+01 1aym3 1u9tA 354 2.08e+01 1te5A 257 2.11e+01 d.153.1.1 106795 1wm3A 72 2.18e+01 1a6cA 513 2.20e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1wn2A 121 2.31e+01 1z4rA 168 2.47e+01 1wrvA 308 2.49e+01 1sn4A 64 2.54e+01 1aho g.3.7.1 44136 1edqA 540 2.55e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1ny4A 82 2.56e+01 b.40.4.5 92316 1vr3A 191 2.57e+01 1rkd 309 2.63e+01 1rkd c.72.1.1 34928 1zmdA 474 2.71e+01 1rfs 139 2.73e+01 1rfs b.33.1.1 24434 1zud1 251 2.87e+01 1mkaA 171 2.90e+01 1mkaA d.38.1.2 38543 2ffyA 358 2.95e+01 1vloA 381 3.06e+01 b.44.2.1,d.250.1.1 108838,108839 1u5uA 374 3.36e+01 1utyA 187 3.47e+01 b.147.1.1 108036 1vl5A 260 3.55e+01 c.66.1.41 108720 1vkkA 154 3.65e+01 d.109.1.2 108669 1d7uA 433 4.01e+01 2dkb c.67.1.4 34439 1e1oA 504 4.02e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2gh1A 301 4.06e+01 1fukA 165 4.20e+01 1fukA c.37.1.19 32409 1gteA 1025 4.21e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2hlcA 230 4.34e+01 5ptp b.47.1.2 26074 1iyeA 309 4.40e+01 e.17.1.1 83786 1ep0A 185 4.46e+01 1dzrA b.82.1.1 28080 1krs 120 4.51e+01 1krs b.40.4.1 25256 1xdnA 277 4.59e+01 1gox 370 4.61e+01 1gox c.1.4.1 28607 1msc 129 4.72e+01 1msc d.85.1.1 40039 1naqA 112 4.73e+01 d.58.5.2 91761 1h7zA 194 4.78e+01 1qhvA b.21.1.1 60733 1b6a 478 4.85e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 2bklA 695 4.88e+01 1y8qA 346 4.88e+01 1uv7A 110 5.06e+01 d.67.4.1 100040 2erfA 209 5.07e+01 1ysrA 150 5.25e+01 2fp7B 172 5.47e+01 2fo3A 125 5.50e+01 1feuA 206 5.54e+01 1feuA b.53.1.1 59801 1k92A 455 5.58e+01 c.26.2.1,d.210.1.1 68325,68326 1gwyA 175 5.59e+01 b.97.1.1 83356 1ez0A 510 5.60e+01 1eyyA c.82.1.1 35385 1oi6A 205 5.63e+01 b.82.1.1 103940 1epfA 191 5.77e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1w5rA 278 5.86e+01 1gx3A 284 5.87e+01 d.3.1.5 70678 1sffA 426 5.88e+01 c.67.1.4 105482 1f8eA 388 5.92e+01 2qwc b.68.1.1 59694 2b5hA 200 5.93e+01 1yhpA 212 6.11e+01 1ojqA 212 6.12e+01 d.166.1.1 93146 1jmcA 246 6.23e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1od3A 168 6.64e+01 b.18.1.10 86825 1w41A 101 6.88e+01 2cpgA 45 6.90e+01 2cpgA a.43.1.3 17455 1zx0A 236 7.14e+01 7ahlA 293 7.15e+01 7ahlA f.6.1.1 43812 1p1lA 102 7.18e+01 d.58.5.2 87695 1gheA 177 7.45e+01 d.108.1.1 76222 2f06A 144 7.46e+01 2dexX 671 7.47e+01 1kn6A 90 7.59e+01 d.58.3.3 72770 1ub0A 258 7.62e+01 c.72.1.2 88394 1xrtA 467 7.68e+01 1p5fA 189 7.80e+01 c.23.16.2 94142 1c3mA 147 7.82e+01 1jotA b.77.3.1 27983 1i7kA 179 7.89e+01 1u9aA d.20.1.1 61889 1vlyA 338 8.01e+01 b.44.2.1,d.250.1.1 108871,108872 1i88A 389 8.05e+01 c.95.1.2,c.95.1.2 66070,66071 1m1nB 522 8.34e+01 c.92.2.3 78418 1s5uA 138 8.38e+01 d.38.1.1 98573 1idk 359 8.49e+01 1qcxA b.80.1.2 28025 1xo7A 166 8.60e+01 2be3A 226 8.78e+01 1dwkA 156 8.97e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606