# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 1.35e-04 1kicA 339 2.44e+00 c.70.1.1 72510 2bitX 165 4.20e+00 1kdgA 546 4.73e+00 c.3.1.2,d.16.1.1 77337,77338 1y4tA 322 4.82e+00 2boqA 331 5.93e+00 1ua4A 455 7.19e+00 c.72.1.3 99128 1y97A 238 7.47e+00 1f89A 291 7.76e+00 d.160.1.1 64988 2ffyA 358 7.88e+00 1zkjA 359 8.21e+00 1wrvA 308 9.15e+00 1q8fA 313 9.71e+00 c.70.1.1 96203 2gnxA 365 9.86e+00 1p5tA 127 9.93e+00 b.55.1.2 94148 1wzoA 246 1.03e+01 1n46A 258 1.11e+01 a.123.1.1 85315 1ys7A 233 1.12e+01 1n1bA 549 1.15e+01 a.102.4.1,a.128.1.3 79799,79800 1hqkA 154 1.15e+01 c.16.1.1 65902 2b99A 156 1.19e+01 1yndA 165 1.30e+01 1l6rA 227 1.36e+01 c.108.1.10 77768 1vphA 149 1.38e+01 2f96A 224 1.48e+01 1kv7A 488 1.55e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1dywA 173 1.60e+01 2cpl b.62.1.1 27505 1ub0A 258 1.61e+01 c.72.1.2 88394 1zcxA 178 1.75e+01 1oa2A 218 1.77e+01 b.29.1.11 86721 1nrwA 288 1.84e+01 c.108.1.10 86128 2dcnA 311 1.85e+01 1w41A 101 1.87e+01 2g09A 297 1.93e+01 1zkiA 133 2.08e+01 1z4rA 168 2.15e+01 1vd4A 62 2.17e+01 1xyzA 347 2.19e+01 1taxA c.1.8.3 28804 1kgsA 225 2.35e+01 a.4.6.1,c.23.1.1 68596,68597 1r6uA 437 2.38e+01 c.26.1.1 97163 1uayA 242 2.43e+01 c.2.1.2 88390 1gs5A 258 2.46e+01 c.73.1.2 70395 1zjjA 263 2.47e+01 1vdnA 162 2.71e+01 2a74A 643 2.72e+01 2g9iA 249 2.74e+01 2b5hA 200 2.80e+01 1yydA 357 2.80e+01 1luaA 287 2.86e+01 c.2.1.7,c.58.1.4 78216,78217 2dexX 671 2.90e+01 1pea 385 2.96e+01 1pea c.93.1.1 35662 1zrn 232 2.97e+01 1qq5A c.108.1.1 43323 1v71A 323 3.00e+01 1oi7A 288 3.05e+01 c.2.1.8,c.23.4.1 87049,87050 1qr0A 228 3.13e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1vkmA 297 3.14e+01 c.138.1.1 108670 2cxxA 190 3.15e+01 1b6g 310 3.17e+01 1b6g c.69.1.8 34661 1v37A 177 3.22e+01 1t0bA 252 3.42e+01 c.23.16.6 106199 2al3A 90 3.44e+01 1k87A 669 3.60e+01 a.176.1.1,c.1.23.2 77286,77287 1sk4A 163 3.61e+01 d.118.1.1 105664 2ex5A 207 3.63e+01 2pgd 482 3.68e+01 2pgd a.100.1.1,c.2.1.6 18778,30190 1yk3A 210 3.71e+01 1gwmA 153 3.74e+01 b.18.1.19 83348 1hl9A 449 3.83e+01 b.71.1.3,c.1.8.11 90650,90651 1nzyA 269 3.97e+01 1nzyA c.14.1.3 30903 1erjA 393 3.97e+01 1erjA b.69.4.1 27660 1mxiA 160 4.05e+01 c.116.1.1 79646 2cvjA 180 4.07e+01 1pgl2 370 4.07e+01 1uzmA 247 4.14e+01 1nf2A 268 4.17e+01 c.108.1.10 91849 1oyzA 280 4.19e+01 a.118.1.16 93775 1b6a 478 4.32e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 2aq8A 269 4.38e+01 2hgsA 474 4.52e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1r5mA 425 4.56e+01 1o98A 511 4.56e+01 c.105.1.1,c.76.1.3 86684,86685 1vbuA 328 4.58e+01 1me4A 215 4.59e+01 d.3.1.1 79023 2bkkA 264 4.59e+01 1n7kA 234 4.60e+01 c.1.10.1 85374 1ppjJ 62 4.61e+01 f.23.14.1 104266 1cs1A 386 4.68e+01 1ibjA c.67.1.3 34399 1fukA 165 4.70e+01 1fukA c.37.1.19 32409 2c2nA 339 4.86e+01 1wvfA 520 4.87e+01 1zvkA 358 4.99e+01 1xg5A 279 5.00e+01 1im8A 244 5.03e+01 c.66.1.14 66212 1rh5A 436 5.16e+01 f.41.1.1 97464 1g2oA 268 5.21e+01 1b8oA c.56.2.1 60228 1sczA 233 5.24e+01 c.43.1.1 98802 2b4wA 315 5.30e+01 1qz8A 113 5.37e+01 b.140.1.1 96619 1uufA 369 5.44e+01 b.35.1.2,c.2.1.1 100006,100007 1yoeA 322 5.50e+01 1r85A 379 5.61e+01 c.1.8.3 104839 1hc7A 477 5.62e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1qgdA 662 5.66e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 2bneA 241 5.71e+01 1im5A 180 5.81e+01 c.33.1.3 66211 1frb 315 5.86e+01 1frb c.1.7.1 28665 2b8lA 405 6.07e+01 1l1lA 739 6.14e+01 c.7.1.4 73470 1xklA 273 6.18e+01 1wz8A 264 6.18e+01 1mh1 186 6.19e+01 1eesA c.37.1.8 32002 1j4aA 333 6.28e+01 c.2.1.4,c.23.12.1 71502,71503 1kolA 398 6.36e+01 b.35.1.2,c.2.1.1 77474,77475 1w50A 411 6.38e+01 b.50.1.2 109173 1f5mA 180 6.42e+01 1f5mB d.110.2.1 40895 1zxxA 319 6.49e+01 1vp2A 208 6.52e+01 1wznA 252 6.52e+01 2cz1B 212 6.59e+01 1c1yB 77 6.68e+01 1c1yB d.15.1.5 37618 1iyeA 309 6.73e+01 e.17.1.1 83786 1sffA 426 6.75e+01 c.67.1.4 105482 1lycA 343 6.79e+01 a.93.1.1 74344 2azjA 289 6.86e+01 1bif 469 6.91e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1k20A 310 7.04e+01 c.107.1.1 68027 1vc4A 254 7.43e+01 c.1.2.4 100557 1tqhA 247 7.52e+01 c.69.1.29 107225 1yacA 208 7.64e+01 1yacA c.33.1.3 31757 1zmdA 474 7.65e+01 1r6xA 395 7.68e+01 b.122.1.3,c.26.1.5 97167,97168 1siqA 392 7.79e+01 a.29.3.1,e.6.1.1 105585,105586 1k3iA 656 7.88e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2cvdA 198 7.92e+01 1s1pA 331 7.96e+01 c.1.7.1 98350 2fq9A 225 8.04e+01 1icpA 376 8.04e+01 1oyc c.1.4.1 62270 1iyhA 198 8.07e+01 a.45.1.1,c.47.1.5 83790,83791 1sc6A 404 8.08e+01 1xo7A 166 8.10e+01 1gheA 177 8.17e+01 d.108.1.1 76222 1sr2A 116 8.25e+01 1v6tA 255 8.26e+01 1q5xA 161 8.31e+01 c.8.7.1 95947 1umzA 278 8.37e+01 b.29.1.2 99639 1zd3A 555 8.39e+01 1rlmA 271 8.46e+01 2cfeA 162 8.50e+01 1i8dA 213 8.52e+01 b.43.4.3,b.43.4.3 61953,61954 1wdtA 665 8.54e+01 1h0pA 182 8.74e+01 b.62.1.1 76450 1j93A 353 8.83e+01 c.1.22.1 66454 1krs 120 8.84e+01 1krs b.40.4.1 25256 1qq5A 253 8.87e+01 1qq5A c.108.1.1 43327 1va0A 239 8.92e+01 1qhqA 140 8.96e+01 1qhqA b.6.1.1 63326 2abwA 227 8.97e+01