# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 1.21e-05 2al3A 90 1.35e+00 1c1yB 77 1.37e+00 1c1yB d.15.1.5 37618 1sn4A 64 2.32e+00 1aho g.3.7.1 44136 1te5A 257 2.35e+00 d.153.1.1 106795 1ys7A 233 2.78e+00 1e1oA 504 3.03e+00 1lylA b.40.4.1,d.104.1.1 25258,40714 1v6fA 151 3.05e+00 d.109.1.2 108395 1vloA 381 3.35e+00 b.44.2.1,d.250.1.1 108838,108839 1kv0A 66 3.54e+00 g.3.7.1 91040 2c6cA 707 3.70e+00 1euvB 86 4.11e+00 1a5r d.15.1.1 37598 1vkkA 154 4.35e+00 d.109.1.2 108669 1h1wA 289 4.60e+00 d.144.1.7 83460 1p5fA 189 4.67e+00 c.23.16.2 94142 1wosA 364 5.07e+00 b.44.2.1,d.250.1.1 109468,109469 1qcwA 410 6.13e+00 1gox c.1.4.1 28622 1zq1A 438 6.70e+00 1b56 135 6.77e+00 1hmt b.60.1.2 27183 2gh1A 301 7.26e+00 1yh6A 179 7.38e+00 1kgsA 225 7.46e+00 a.4.6.1,c.23.1.1 68596,68597 1uu3A 310 7.57e+00 d.144.1.7 99999 1kbjA 412 7.59e+00 c.1.4.1 72280 2bgcA 238 7.65e+00 1upiA 225 8.15e+00 b.82.1.1 99757 1g291 372 8.52e+00 1g291 1zud1 251 9.07e+00 2gnxA 365 9.19e+00 1djtA 64 9.34e+00 1aho g.3.7.1 44132 1ny4A 82 1.03e+01 b.40.4.5 92316 2c0zA 216 1.06e+01 1hf2A 210 1.07e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1fukA 165 1.11e+01 1fukA c.37.1.19 32409 2btvA 901 1.13e+01 2btvA e.28.1.1 43376 1omiA 248 1.13e+01 b.82.3.3,a.4.5.4 87079,87080 1j3kA 280 1.16e+01 c.71.1.1 84070 2b29A 123 1.19e+01 1lylA 504 1.20e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1wrvA 308 1.20e+01 1k2eA 156 1.25e+01 d.113.1.1 72010 1ep0A 185 1.33e+01 1dzrA b.82.1.1 28080 1wm3A 72 1.47e+01 1vk6A 269 1.47e+01 d.113.1.4,d.113.1.4 100851,100852 1wn2A 121 1.48e+01 1i1kA 309 1.57e+01 1daaA e.17.1.1 61533 2cvjA 180 1.60e+01 1zbtA 371 1.63e+01 2ffyA 358 1.68e+01 2b0vA 153 1.70e+01 1mkaA 171 1.73e+01 1mkaA d.38.1.2 38543 2bb6A 414 1.75e+01 1yrvA 169 1.83e+01 1gskA 513 1.83e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1z4rA 168 1.84e+01 1epfA 191 1.92e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1vizA 240 1.94e+01 c.1.4.1 100784 1fsyA 358 1.96e+01 1gceA e.3.1.1 60016 1pi4A 358 2.03e+01 e.3.1.1 94700 1qhqA 140 2.03e+01 1qhqA b.6.1.1 63326 2b4hA 254 2.08e+01 1ysrA 150 2.20e+01 1l0gA 358 2.22e+01 e.3.1.1 73400 1a6cA 513 2.25e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1i5pA 633 2.30e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1zdrA 164 2.32e+01 1krs 120 2.34e+01 1krs b.40.4.1 25256 1p1cA 199 2.38e+01 c.66.1.16 87669 1y8qA 346 2.42e+01 1vhsA 175 2.62e+01 d.108.1.1 100698 2b3gA 123 2.92e+01 1gox 370 2.96e+01 1gox c.1.4.1 28607 1uv7A 110 2.97e+01 d.67.4.1 100040 1pqhA 143 3.01e+01 b.52.2.1 95017 1k92A 455 3.05e+01 c.26.2.1,d.210.1.1 68325,68326 1ktgA 138 3.31e+01 d.113.1.1 72972 1utyA 187 3.34e+01 b.147.1.1 108036 1q42A 201 3.49e+01 d.17.4.2 95776 1vl4A 447 3.54e+01 d.283.1.1 108718 1h1yA 228 3.58e+01 c.1.2.2 76506 1nzaA 103 3.65e+01 d.58.5.2 86444 1iyeA 309 3.66e+01 e.17.1.1 83786 1ydmA 187 3.70e+01 1xclA 235 3.81e+01 1oi6A 205 3.85e+01 b.82.1.1 103940 1gr0A 367 3.87e+01 c.2.1.3,d.81.1.3 70379,70380 1ylxA 103 3.91e+01 1ye8A 178 3.92e+01 1d7uA 433 3.95e+01 2dkb c.67.1.4 34439 1qqsA 174 3.98e+01 1nglA b.60.1.1 27143 2dkb 433 4.00e+01 2dkb c.67.1.4 34438 1aym3 238 4.02e+01 1aym3 1i88A 389 4.11e+01 c.95.1.2,c.95.1.2 66070,66071 1zk5A 176 4.11e+01 1xgsA 295 4.18e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1ofnA 205 4.28e+01 b.82.1.1 92830 2f06A 144 4.29e+01 1vdxA 184 4.36e+01 1qkkA 155 4.36e+01 1dbwA c.23.1.1 31104 1xxlA 239 4.37e+01 1msc 129 4.43e+01 1msc d.85.1.1 40039 1v3rA 116 4.67e+01 2bl9A 238 4.71e+01 1m4lA 307 4.84e+01 c.56.5.1 78604 2g3aA 152 4.84e+01 2blcA 238 5.03e+01 1i8dA 213 5.04e+01 b.43.4.3,b.43.4.3 61953,61954 1vcdA 126 5.07e+01 1wl4A 397 5.16e+01 1xrtA 467 5.28e+01 2ctc 307 5.32e+01 1aye c.56.5.1 33802 2b99A 156 5.36e+01 1o57A 291 5.44e+01 a.4.5.40,c.61.1.1 92483,92484 1u9tA 354 5.69e+01 1usrA 454 5.82e+01 b.68.1.1 99881 1vmjA 151 5.86e+01 1ylnA 252 5.90e+01 2erfA 209 5.98e+01 1s5uA 138 6.06e+01 d.38.1.1 98573 1edqA 540 6.47e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1sdsA 117 6.58e+01 d.79.3.1 105439 1h7mA 102 6.62e+01 d.79.3.1 83485 1yioA 208 6.62e+01 1r4pA 297 6.72e+01 d.165.1.2 97025 1c3mA 147 6.72e+01 1jotA b.77.3.1 27983 2cxhA 217 6.77e+01 1u8sA 192 6.78e+01 d.58.18.5,d.58.18.5 107737,107738 1jatB 138 6.82e+01 1jatB d.20.1.1 62819 1vgjA 184 6.96e+01 1b6a 478 6.98e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 2axwA 134 7.05e+01 1rkuA 206 7.05e+01 c.108.1.11 97627 1ze3H 122 7.13e+01 1yduA 170 7.35e+01 1qh8B 519 7.36e+01 1qguB c.92.2.3 35634 1wfyA 104 7.52e+01 1qflA 389 7.54e+01 1afwA c.95.1.1,c.95.1.1 35908,35909 2lbp 346 7.55e+01 2liv c.93.1.1 35709 1ckv 141 7.63e+01 1ckv d.137.1.1 41452 1n9eA 787 7.73e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1xezA 721 7.75e+01 1mpp 361 7.76e+01 2rmpA b.50.1.2 26856 1m3kA 392 7.82e+01 c.95.1.1,c.95.1.1 78565,78566 1r3eA 309 7.86e+01 b.122.1.1,d.265.1.2 96907,96908 1m4tA 392 7.91e+01 c.95.1.1,c.95.1.1 78617,78618 1segA 64 7.93e+01 g.3.7.1 105453 1aho 64 7.96e+01 1aho g.3.7.1 44127 1tufA 434 7.97e+01 b.49.2.3,c.1.6.1 107335,107336 2fp7B 172 8.05e+01 1jg1A 235 8.07e+01 c.66.1.7 66661 2fvvA 194 8.17e+01 2hlcA 230 8.18e+01 5ptp b.47.1.2 26074 1ydwA 362 8.19e+01 1h7zA 194 8.29e+01 1qhvA b.21.1.1 60733 1u1wA 298 8.38e+01 1dc1A 323 8.57e+01 1dc1A c.52.1.11 33321 1quqA 129 8.60e+01 1quqA b.40.4.3 25303 1xubA 298 8.62e+01 2ezvA 269 8.78e+01 1nqzA 194 8.81e+01 d.113.1.1 86077 1vphA 149 8.90e+01