# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 4.50e-06 1c1yB 77 1.19e-01 1c1yB d.15.1.5 37618 2al3A 90 2.48e-01 1kv0A 66 6.92e-01 g.3.7.1 91040 1p5fA 189 9.02e-01 c.23.16.2 94142 1sn4A 64 1.08e+00 1aho g.3.7.1 44136 1kgsA 225 1.44e+00 a.4.6.1,c.23.1.1 68596,68597 1euvB 86 1.50e+00 1a5r d.15.1.1 37598 1ys7A 233 1.84e+00 2c6cA 707 1.89e+00 1wrvA 308 1.89e+00 1k2eA 156 2.04e+00 d.113.1.1 72010 1zud1 251 2.27e+00 1qcwA 410 2.30e+00 1gox c.1.4.1 28622 1e1oA 504 2.33e+00 1lylA b.40.4.1,d.104.1.1 25258,40714 1g291 372 2.57e+00 1g291 1uv7A 110 2.57e+00 d.67.4.1 100040 1wm3A 72 3.21e+00 1i1kA 309 3.85e+00 1daaA e.17.1.1 61533 1lylA 504 4.11e+00 1lylA b.40.4.1,d.104.1.1 25261,40717 1c3mA 147 4.46e+00 1jotA b.77.3.1 27983 1kbjA 412 4.52e+00 c.1.4.1 72280 2gnxA 365 5.06e+00 1qqsA 174 5.11e+00 1nglA b.60.1.1 27143 1iyeA 309 5.43e+00 e.17.1.1 83786 1p5vA 235 5.48e+00 b.1.11.1,b.7.2.1 87812,87813 1idk 359 5.52e+00 1qcxA b.80.1.2 28025 1a6cA 513 5.55e+00 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1djtA 64 6.16e+00 1aho g.3.7.1 44132 1ep0A 185 6.65e+00 1dzrA b.82.1.1 28080 1krs 120 7.56e+00 1krs b.40.4.1 25256 1s3iA 310 7.81e+00 b.46.1.1,c.65.1.1 98435,98436 1vizA 240 9.23e+00 c.1.4.1 100784 1yh6A 179 9.57e+00 1zdrA 164 9.60e+00 1vloA 381 9.61e+00 b.44.2.1,d.250.1.1 108838,108839 1zmdA 474 9.68e+00 1te5A 257 9.95e+00 d.153.1.1 106795 1nzaA 103 1.02e+01 d.58.5.2 86444 1h1yA 228 1.08e+01 c.1.2.2 76506 1zbtA 371 1.13e+01 1wn2A 121 1.15e+01 2cvjA 180 1.20e+01 2atfA 200 1.22e+01 1v8yA 170 1.24e+01 2bgcA 238 1.26e+01 1hf2A 210 1.29e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1edqA 540 1.38e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1qcxA 359 1.38e+01 1qcxA b.80.1.2 28028 1fukA 165 1.42e+01 1fukA c.37.1.19 32409 2lbp 346 1.48e+01 2liv c.93.1.1 35709 2fp7B 172 1.51e+01 1zq1A 438 1.54e+01 1l5wA 796 1.54e+01 c.87.1.4 73605 2b5hA 200 1.55e+01 1usgA 346 1.56e+01 c.93.1.1 99864 1rkuA 206 1.61e+01 c.108.1.11 97627 1utyA 187 1.64e+01 b.147.1.1 108036 1r3eA 309 1.64e+01 b.122.1.1,d.265.1.2 96907,96908 1gox 370 1.67e+01 1gox c.1.4.1 28607 1hskA 326 1.72e+01 2mbr d.145.1.2,d.146.1.1 61241,61242 1b56 135 1.74e+01 1hmt b.60.1.2 27183 2b29A 123 1.79e+01 1qkkA 155 1.80e+01 1dbwA c.23.1.1 31104 2amyA 246 1.83e+01 1wosA 364 1.84e+01 b.44.2.1,d.250.1.1 109468,109469 1h8vA 218 1.86e+01 2nlrA b.29.1.11 60795 2f06A 144 1.91e+01 1yrvA 169 1.91e+01 1epfA 191 1.94e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 2ctc 307 1.98e+01 1aye c.56.5.1 33802 1m4lA 307 1.99e+01 c.56.5.1 78604 1xrtA 467 1.99e+01 1x71A 178 2.01e+01 1jjiA 311 2.05e+01 c.69.1.2 66766 1naqA 112 2.15e+01 d.58.5.2 91761 1yx1A 264 2.32e+01 1ctn 540 2.41e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21876,29005,38439 1ezwA 349 2.45e+01 1ezwA c.1.16.3 29558 1fsyA 358 2.45e+01 1gceA e.3.1.1 60016 1zk5A 176 2.53e+01 1zjjA 263 2.53e+01 1b6a 478 2.54e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1oa2A 218 2.58e+01 b.29.1.11 86721 1zkjA 359 2.63e+01 2liv 344 2.63e+01 2liv c.93.1.1 35708 1jg1A 235 2.67e+01 c.66.1.7 66661 1cjcA 460 2.73e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1qh8B 519 2.74e+01 1qguB c.92.2.3 35634 1gs5A 258 2.74e+01 c.73.1.2 70395 2btvA 901 2.79e+01 2btvA e.28.1.1 43376 1ktgA 138 2.82e+01 d.113.1.1 72972 1vjoA 393 2.85e+01 c.67.1.3 100827 1x89A 178 2.87e+01 2ab0A 205 2.93e+01 1pi4A 358 2.93e+01 e.3.1.1 94700 1q7sA 117 3.04e+01 c.131.1.1 96055 2bzoB 79 3.06e+01 2a3nA 355 3.09e+01 1vjkA 98 3.10e+01 d.15.3.1 108631 1vmjA 151 3.11e+01 5abp 306 3.11e+01 8abp c.93.1.1 35651 1z4rA 168 3.19e+01 8abp 306 3.20e+01 8abp c.93.1.1 35647 1q42A 201 3.26e+01 d.17.4.2 95776 2g3aA 152 3.29e+01 1omiA 248 3.30e+01 b.82.3.3,a.4.5.4 87079,87080 1xxlA 239 3.40e+01 1kwiA 101 3.41e+01 d.17.1.3 77564 1aho 64 3.41e+01 1aho g.3.7.1 44127 1segA 64 3.52e+01 g.3.7.1 105453 1ye8A 178 3.54e+01 1quqA 129 3.57e+01 1quqA b.40.4.3 25303 1k92A 455 3.61e+01 c.26.2.1,d.210.1.1 68325,68326 3pte 349 3.72e+01 3pte e.3.1.1 42687 1sffA 426 3.74e+01 c.67.1.4 105482 2axwA 134 3.76e+01 1z15A 344 3.76e+01 1ofnA 205 3.76e+01 b.82.1.1 92830 2fomB 185 3.80e+01 2b4hA 254 3.83e+01 1vcdA 126 3.88e+01 1t4hA 290 3.89e+01 d.144.1.7 106420 2b0vA 153 3.95e+01 2ffyA 358 3.98e+01 1y8qA 346 4.05e+01 1r6fA 310 4.06e+01 e.46.1.1 97149 1nm1G 125 4.10e+01 d.109.1.1 80653 2ca6A 386 4.11e+01 2f6uA 234 4.12e+01 1nwbA 124 4.17e+01 b.124.1.1 86296 1m1hA 248 4.18e+01 b.114.1.1,d.58.42.1 78415,78416 1t8qA 336 4.18e+01 c.1.18.3 106669 1sy3A 184 4.24e+01 b.60.1.1 106110 1l0gA 358 4.25e+01 e.3.1.1 73400 2f1rA 171 4.26e+01 1oi6A 205 4.37e+01 b.82.1.1 103940 1dl5A 317 4.37e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1gteA 1025 4.37e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1p0hA 318 4.37e+01 d.108.1.1 93866 1w8sA 263 4.44e+01 1d4xG 126 4.45e+01 1d0nA d.109.1.1 59109 1ojxA 263 4.47e+01 c.1.10.1 93164 1ohvA 472 4.49e+01 c.67.1.4 93031 1gskA 513 4.53e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1m1nB 522 4.61e+01 c.92.2.3 78418 1ylxA 103 4.61e+01 1u9tA 354 4.63e+01 1c24A 263 4.63e+01 1c24A d.127.1.1 41148 1h7wA 1025 4.66e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2fueA 262 4.70e+01 1k8wA 327 4.71e+01 b.122.1.1,d.265.1.2 83094,90388 1erxA 184 4.73e+01 1np1A b.60.1.1 27164 1yrgA 385 4.73e+01 1yrgA c.10.1.2 30854 1vk6A 269 4.76e+01 d.113.1.4,d.113.1.4 100851,100852 1v6fA 151 4.80e+01 d.109.1.2 108395 1bmv2 374 4.89e+01 1bmv2 1ydwA 362 4.90e+01 1j3kA 280 4.96e+01 c.71.1.1 84070 2bl1A 172 4.99e+01 1ysrA 150 5.06e+01 1z9lA 128 5.10e+01 1pwgA 349 5.22e+01 e.3.1.1 104340 1yqsA 349 5.22e+01 1mplA 349 5.22e+01 e.3.1.1 79387 1h1wA 289 5.27e+01 d.144.1.7 83460 2ftbA 125 5.30e+01 1ydyA 356 5.37e+01 2cpgA 45 5.40e+01 2cpgA a.43.1.3 17455 1sjyA 159 5.46e+01 d.113.1.1 98900 2yhx 457 5.47e+01 2yhx i.12.1.1 46024 1xnzA 264 5.53e+01 1koiA 184 5.53e+01 b.60.1.1 68725 1vkmA 297 5.57e+01 c.138.1.1 108670 1d7uA 433 5.63e+01 2dkb c.67.1.4 34439 1osdA 72 5.64e+01 d.58.17.1 104022 1veaA 148 5.65e+01 d.275.1.1 108529 1vjqA 79 5.74e+01 k.43.1.1 100830 2c0zA 216 5.79e+01 1ydmA 187 5.94e+01 1h7mA 102 5.95e+01 d.79.3.1 83485 2dkb 433 6.03e+01 2dkb c.67.1.4 34438 1gx3A 284 6.05e+01 d.3.1.5 70678 1w41A 101 6.07e+01 1x8qA 184 6.14e+01 1o51A 114 6.16e+01 d.58.5.4 92480 1gheA 177 6.17e+01 d.108.1.1 76222 1pmmA 466 6.19e+01 c.67.1.6 94901 1s1qA 145 6.28e+01 d.20.1.2 98351 1n7kA 234 6.29e+01 c.1.10.1 85374 2be3A 226 6.38e+01 1y0bA 197 6.46e+01 1mkaA 171 6.54e+01 1mkaA d.38.1.2 38543 1dmhA 311 6.56e+01 1dmhA b.3.6.1 22633 1htqA 477 6.59e+01 d.15.9.1,d.128.1.1 71035,71036 1dosA 358 6.71e+01 1dosA c.1.10.2 29175 2fwuA 157 6.71e+01 1gwyA 175 6.73e+01 b.97.1.1 83356 1jyhA 157 6.77e+01 d.60.1.3 71956 1vkkA 154 6.77e+01 d.109.1.2 108669 1e9lA 377 6.84e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 3aprE 325 6.85e+01 2er7E b.50.1.2 26820 2apr 325 6.87e+01 2er7E b.50.1.2 26819 1yioA 208 6.88e+01 1wruA 379 6.90e+01 7ahlA 293 7.00e+01 7ahlA f.6.1.1 43812 1ubi 76 7.09e+01 1ubi d.15.1.1 37584 1j3wA 163 7.13e+01 d.110.7.1 90833 1qjpA 171 7.16e+01 1bxwA f.4.1.1 43742 2a0iA 330 7.20e+01 1ogwA 76 7.21e+01 d.15.1.1 87001 1o9wA 177 7.24e+01 b.2.3.5 86713 2cxhA 217 7.24e+01 1n67A 359 7.25e+01 b.2.3.4,b.2.3.4 85354,85355 1wl4A 397 7.27e+01 1frrA 95 7.28e+01 1awd d.15.4.1 37674 1nbfD 76 7.28e+01 d.15.1.1 80390 1u5uA 374 7.33e+01 1t3qA 168 7.35e+01 a.56.1.1,d.15.4.2 106367,106368 1wlsA 328 7.40e+01 1eg2A 319 7.40e+01 1eg2A c.66.1.11 34249 1njkA 156 7.44e+01 d.38.1.1 85818 1oi7A 288 7.49e+01 c.2.1.8,c.23.4.1 87049,87050 2bo9A 308 7.49e+01 1tv8A 340 7.61e+01 c.1.28.3 107352 1pytA 94 7.65e+01 1pytA d.58.3.1 39064 2b67A 204 7.75e+01 1g0sA 209 7.76e+01 1g0sA d.113.1.1 60187 1vr6A 350 7.76e+01 1zx2A 147 7.78e+01 1vl4A 447 7.86e+01 d.283.1.1 108718 1ztpA 251 7.95e+01 2bkrB 77 7.96e+01 1sdeA 347 7.96e+01 1wmqA 147 8.02e+01 1wpuA 147 8.08e+01 1yirA 408 8.10e+01 1stmA 157 8.14e+01 1stmA b.121.7.1 23281 1hvbA 349 8.16e+01 3pte e.3.1.1 42686 1dciA 275 8.19e+01 1dciA c.14.1.3 30918 2c2nA 339 8.19e+01 1yifA 533 8.23e+01 1zesA 125 8.28e+01 1et0A 269 8.32e+01 1et0A e.17.1.1 43289 1uu3A 310 8.32e+01 d.144.1.7 99999 1uzmA 247 8.43e+01 2bwfA 77 8.44e+01 1egwA 77 8.52e+01 1mnmA d.88.1.1 40234 1mvoA 136 8.52e+01 c.23.1.1 79513 1fjgC 239 8.61e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1v95A 130 8.72e+01 c.51.1.1 108435 1yvoA 172 8.74e+01 1qfhA 212 8.77e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1xdnA 277 8.81e+01 3daaA 277 8.85e+01 1daaA e.17.1.1 43272 2bc3A 159 8.88e+01 1f8eA 388 8.89e+01 2qwc b.68.1.1 59694 1pgl2 370 8.89e+01 1bkb 136 8.98e+01 1bkb b.34.5.2,b.40.4.5 24609,25341