# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 2.78e-04 1kicA 339 3.76e+00 c.70.1.1 72510 2pgd 482 5.94e+00 2pgd a.100.1.1,c.2.1.6 18778,30190 1ua4A 455 8.82e+00 c.72.1.3 99128 1hqkA 154 9.37e+00 c.16.1.1 65902 2bitX 165 1.14e+01 1xyzA 347 1.36e+01 1taxA c.1.8.3 28804 1y4tA 322 1.45e+01 1ub0A 258 1.49e+01 c.72.1.2 88394 1rzrA 332 1.54e+01 1pi4A 358 1.57e+01 e.3.1.1 94700 1kdgA 546 1.58e+01 c.3.1.2,d.16.1.1 77337,77338 1f89A 291 1.58e+01 d.160.1.1 64988 2b99A 156 1.64e+01 2boqA 331 1.64e+01 2ffyA 358 1.68e+01 1q8fA 313 1.70e+01 c.70.1.1 96203 1zkjA 359 1.75e+01 2g9iA 249 1.96e+01 2dcnA 311 2.01e+01 1wrvA 308 2.11e+01 1fsyA 358 2.20e+01 1gceA e.3.1.1 60016 1n1bA 549 2.24e+01 a.102.4.1,a.128.1.3 79799,79800 2cpl 165 2.29e+01 2cpl b.62.1.1 27420 1yndA 165 2.33e+01 1fukA 165 2.42e+01 1fukA c.37.1.19 32409 1l6rA 227 2.45e+01 c.108.1.10 77768 1awsA 164 2.45e+01 2cpl b.62.1.1 27431 1p5tA 127 2.46e+01 b.55.1.2 94148 2f96A 224 2.52e+01 1h8vA 218 2.52e+01 2nlrA b.29.1.11 60795 1n46A 258 2.52e+01 a.123.1.1 85315 1zjjA 263 2.56e+01 1z4rA 168 2.58e+01 1uayA 242 2.75e+01 c.2.1.2 88390 1l0gA 358 2.85e+01 e.3.1.1 73400 2gnxA 365 2.87e+01 1awqA 164 2.98e+01 2cpl b.62.1.1 27461 1sxgA 280 3.05e+01 2b7oA 464 3.12e+01 1xriA 151 3.19e+01 1r6uA 437 3.22e+01 c.26.1.1 97163 1ys7A 233 3.24e+01 1aru 344 3.25e+01 1arv a.93.1.1 18589 2dexX 671 3.44e+01 1v71A 323 3.49e+01 1vkmA 297 3.49e+01 c.138.1.1 108670 1zcxA 178 3.51e+01 1oa2A 218 3.62e+01 b.29.1.11 86721 1r6xA 395 3.76e+01 b.122.1.3,c.26.1.5 97167,97168 1sr2A 116 3.79e+01 2bneA 241 3.79e+01 2al3A 90 3.83e+01 1v37A 177 3.96e+01 1qr0A 228 3.99e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1pea 385 4.05e+01 1pea c.93.1.1 35662 1y97A 238 4.09e+01 1l2lA 457 4.11e+01 c.72.1.3 77656 1w41A 101 4.12e+01 1sffA 426 4.26e+01 c.67.1.4 105482 1dywA 173 4.36e+01 2cpl b.62.1.1 27505 1vphA 149 4.37e+01 1ea5A 537 4.52e+01 2bce c.69.1.1 34592 1frb 315 4.52e+01 1frb c.1.7.1 28665 1wdaA 670 4.63e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 1usgA 346 4.66e+01 c.93.1.1 99864 1lycA 343 4.72e+01 a.93.1.1 74344 1nrwA 288 4.74e+01 c.108.1.10 86128 1yk3A 210 4.78e+01 1v6fA 151 4.91e+01 d.109.1.2 108395 4pfk 319 4.96e+01 3pfk c.89.1.1 35582 2cxxA 190 5.11e+01 1kolA 398 5.24e+01 b.35.1.2,c.2.1.1 77474,77475 1wznA 252 5.36e+01 2azjA 289 5.37e+01 2b5hA 200 5.38e+01 1r85A 379 5.49e+01 c.1.8.3 104839 1xx4A 261 5.50e+01 2a8lA 420 5.52e+01 1ea9C 583 5.61e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2g09A 297 5.71e+01 1oyzA 280 5.76e+01 a.118.1.16 93775 1gs5A 258 5.81e+01 c.73.1.2 70395 1j6oA 268 5.87e+01 c.1.9.12 77088 1va0A 239 5.89e+01 1n0uA 842 5.97e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1qxoA 388 6.04e+01 d.258.1.1 96539 1wvfA 520 6.28e+01 2atfA 200 6.37e+01 1luaA 287 6.47e+01 c.2.1.7,c.58.1.4 78216,78217 1yydA 357 6.55e+01 2cwlA 302 6.55e+01 2lbp 346 6.62e+01 2liv c.93.1.1 35709 1kgsA 225 6.75e+01 a.4.6.1,c.23.1.1 68596,68597 1jeyB 565 6.93e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 2hgsA 474 6.93e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 2cvjA 180 6.95e+01 1sk4A 163 6.99e+01 d.118.1.1 105664 1h5qA 265 7.04e+01 1cydA c.2.1.2 60643 1wzoA 246 7.04e+01 1vp2A 208 7.10e+01 1vbuA 328 7.15e+01 2ptd 298 7.23e+01 2plc c.1.18.2 29605 1try 224 7.24e+01 5ptp b.47.1.2 26017 2bduA 297 7.26e+01 1c1yB 77 7.29e+01 1c1yB d.15.1.5 37618 1h05A 146 7.32e+01 c.23.13.1 76433 1h7mA 102 7.32e+01 d.79.3.1 83485 2aq8A 269 7.58e+01 1g71A 347 7.65e+01 1g71A d.264.1.1 43268 1q0pA 223 7.69e+01 c.62.1.1 95507 1j8fA 323 7.77e+01 1j8fA c.31.1.5 62738 1ckv 141 7.79e+01 1ckv d.137.1.1 41452 1g2oA 268 7.79e+01 1b8oA c.56.2.1 60228 1u0jA 267 7.81e+01 c.37.1.20 107546 1iyeA 309 7.89e+01 e.17.1.1 83786 1nal1 297 7.90e+01 1nal3 1v8dA 235 8.00e+01 c.140.1.1 108425 1mwyA 73 8.06e+01 d.58.17.1 79616 1ym3A 215 8.08e+01 1y8cA 246 8.16e+01 2bnfB 241 8.33e+01 1kutA 230 8.43e+01 d.143.1.1 73017 1n7kA 234 8.45e+01 c.1.10.1 85374 2cz1B 212 8.51e+01 1wdtA 665 8.57e+01 1eqjA 511 8.61e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 2ex5A 207 8.65e+01 1vdnA 162 8.81e+01 1mn1 357 8.89e+01 1arv a.93.1.1 18667 1gveA 327 8.93e+01 c.1.7.1 70597