# TARGET T0311 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0311.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 56.9073 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.004 0.956 0.002 0.001 0.002 0.001 0.001 0.001 0.013 0.003 0.006 0.012 2 K 0.001 0.020 0.872 0.001 0.005 0.011 0.001 0.001 0.006 0.014 0.012 0.022 0.036 3 M 0.003 0.027 0.631 0.010 0.023 0.032 0.003 0.001 0.010 0.123 0.040 0.018 0.078 4 A 0.002 0.025 0.573 0.004 0.022 0.034 0.002 0.001 0.017 0.199 0.051 0.040 0.031 5 N 0.001 0.017 0.597 0.001 0.012 0.015 0.001 0.001 0.018 0.237 0.042 0.009 0.049 6 H 0.001 0.015 0.783 0.002 0.002 0.004 0.001 0.001 0.009 0.139 0.025 0.009 0.013 7 P 0.001 0.038 0.814 0.001 0.001 0.002 0.001 0.001 0.006 0.118 0.008 0.006 0.006 8 R 0.001 0.025 0.850 0.001 0.001 0.002 0.001 0.001 0.003 0.116 0.001 0.001 0.002 9 P 0.001 0.002 0.027 0.001 0.031 0.734 0.001 0.001 0.001 0.032 0.175 0.001 0.001 10 G 0.001 0.001 0.012 0.001 0.026 0.844 0.001 0.001 0.001 0.014 0.103 0.001 0.001 11 D 0.001 0.001 0.021 0.001 0.018 0.936 0.001 0.001 0.001 0.010 0.014 0.001 0.001 12 I 0.001 0.006 0.028 0.001 0.009 0.941 0.001 0.001 0.001 0.005 0.008 0.001 0.002 13 I 0.001 0.002 0.019 0.001 0.010 0.948 0.001 0.001 0.001 0.004 0.011 0.001 0.002 14 Q 0.001 0.001 0.004 0.001 0.028 0.933 0.001 0.001 0.001 0.003 0.028 0.001 0.001 15 E 0.001 0.001 0.010 0.001 0.026 0.901 0.001 0.001 0.001 0.006 0.054 0.001 0.001 16 S 0.001 0.001 0.008 0.001 0.040 0.846 0.001 0.001 0.001 0.006 0.099 0.001 0.001 17 L 0.001 0.002 0.016 0.001 0.038 0.870 0.001 0.001 0.001 0.020 0.052 0.001 0.001 18 D 0.001 0.001 0.017 0.001 0.062 0.829 0.001 0.001 0.001 0.013 0.075 0.001 0.001 19 E 0.001 0.001 0.013 0.001 0.085 0.781 0.001 0.001 0.001 0.007 0.110 0.001 0.001 20 L 0.001 0.002 0.009 0.001 0.043 0.302 0.001 0.001 0.001 0.038 0.605 0.001 0.001 21 N 0.001 0.002 0.065 0.003 0.009 0.024 0.001 0.001 0.001 0.042 0.852 0.001 0.001 22 V 0.001 0.028 0.730 0.001 0.001 0.006 0.001 0.001 0.003 0.203 0.010 0.012 0.005 23 S 0.001 0.058 0.824 0.001 0.001 0.008 0.001 0.001 0.008 0.079 0.004 0.002 0.015 24 L 0.001 0.001 0.007 0.001 0.009 0.966 0.001 0.001 0.001 0.004 0.012 0.001 0.001 25 R 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 26 E 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 F 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.001 0.001 0.001 0.001 0.004 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 29 R 0.001 0.001 0.001 0.001 0.008 0.964 0.001 0.001 0.001 0.001 0.026 0.001 0.001 30 A 0.001 0.001 0.002 0.001 0.009 0.874 0.001 0.001 0.001 0.003 0.111 0.001 0.001 31 M 0.001 0.001 0.032 0.001 0.030 0.274 0.001 0.001 0.001 0.060 0.604 0.001 0.001 32 E 0.001 0.005 0.123 0.001 0.021 0.020 0.001 0.001 0.001 0.081 0.748 0.001 0.001 33 I 0.001 0.031 0.695 0.001 0.006 0.009 0.001 0.001 0.003 0.225 0.023 0.002 0.006 34 A 0.001 0.008 0.889 0.001 0.002 0.009 0.001 0.001 0.003 0.079 0.003 0.001 0.006 35 P 0.001 0.001 0.009 0.001 0.155 0.773 0.001 0.001 0.001 0.007 0.055 0.001 0.001 36 S 0.001 0.001 0.005 0.001 0.192 0.750 0.001 0.001 0.001 0.007 0.044 0.001 0.001 37 T 0.001 0.001 0.003 0.001 0.113 0.868 0.001 0.001 0.001 0.003 0.012 0.001 0.001 38 A 0.001 0.001 0.003 0.001 0.011 0.977 0.001 0.001 0.001 0.001 0.006 0.001 0.001 39 S 0.001 0.001 0.003 0.001 0.020 0.963 0.001 0.001 0.001 0.002 0.009 0.001 0.001 40 R 0.001 0.001 0.002 0.001 0.025 0.947 0.001 0.001 0.001 0.004 0.018 0.001 0.001 41 L 0.001 0.001 0.006 0.001 0.036 0.932 0.001 0.001 0.001 0.003 0.019 0.001 0.001 42 L 0.001 0.004 0.013 0.001 0.015 0.893 0.001 0.001 0.003 0.011 0.057 0.001 0.001 43 T 0.001 0.002 0.015 0.001 0.020 0.401 0.001 0.001 0.001 0.019 0.538 0.001 0.001 44 G 0.001 0.001 0.074 0.001 0.016 0.069 0.001 0.001 0.001 0.114 0.722 0.001 0.001 45 K 0.001 0.026 0.592 0.001 0.026 0.056 0.001 0.001 0.011 0.194 0.076 0.002 0.014 46 A 0.001 0.018 0.315 0.002 0.070 0.059 0.001 0.001 0.024 0.349 0.137 0.016 0.008 47 A 0.001 0.025 0.530 0.003 0.034 0.050 0.002 0.001 0.040 0.128 0.132 0.005 0.049 48 L 0.001 0.067 0.697 0.001 0.007 0.032 0.001 0.001 0.024 0.118 0.027 0.016 0.009 49 T 0.001 0.012 0.836 0.001 0.001 0.054 0.001 0.001 0.006 0.074 0.003 0.001 0.013 50 P 0.001 0.001 0.002 0.001 0.002 0.988 0.001 0.001 0.001 0.002 0.005 0.001 0.001 51 E 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 52 M 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 53 A 0.001 0.001 0.002 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 I 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 55 K 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 56 L 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 57 S 0.001 0.001 0.001 0.001 0.004 0.978 0.001 0.001 0.001 0.003 0.013 0.001 0.001 58 V 0.001 0.001 0.001 0.001 0.011 0.956 0.001 0.001 0.001 0.002 0.029 0.001 0.001 59 V 0.001 0.001 0.004 0.001 0.014 0.910 0.001 0.001 0.001 0.003 0.068 0.001 0.001 60 I 0.001 0.004 0.059 0.001 0.016 0.457 0.001 0.001 0.001 0.125 0.336 0.001 0.001 61 G 0.001 0.008 0.254 0.002 0.013 0.039 0.001 0.001 0.001 0.247 0.433 0.001 0.001 62 S 0.001 0.023 0.525 0.001 0.003 0.014 0.001 0.001 0.002 0.397 0.031 0.002 0.002 63 S 0.001 0.009 0.803 0.001 0.001 0.013 0.001 0.001 0.001 0.165 0.004 0.001 0.003 64 P 0.001 0.001 0.006 0.001 0.015 0.940 0.001 0.001 0.001 0.005 0.033 0.001 0.001 65 Q 0.001 0.001 0.002 0.001 0.012 0.968 0.001 0.001 0.001 0.002 0.015 0.001 0.001 66 M 0.001 0.001 0.003 0.001 0.016 0.969 0.001 0.001 0.001 0.004 0.008 0.001 0.001 67 W 0.001 0.001 0.004 0.001 0.005 0.984 0.001 0.001 0.001 0.001 0.005 0.001 0.001 68 L 0.001 0.001 0.002 0.001 0.004 0.982 0.001 0.001 0.001 0.001 0.010 0.001 0.001 69 N 0.001 0.001 0.001 0.001 0.002 0.986 0.001 0.001 0.001 0.001 0.010 0.001 0.001 70 L 0.001 0.001 0.001 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.009 0.001 0.001 71 Q 0.001 0.001 0.005 0.001 0.002 0.980 0.001 0.001 0.001 0.003 0.009 0.001 0.001 72 N 0.001 0.001 0.003 0.001 0.003 0.965 0.001 0.001 0.001 0.002 0.026 0.001 0.001 73 A 0.001 0.001 0.004 0.001 0.004 0.940 0.001 0.001 0.001 0.004 0.049 0.001 0.001 74 W 0.001 0.001 0.024 0.001 0.003 0.915 0.001 0.001 0.001 0.022 0.035 0.001 0.001 75 S 0.001 0.002 0.051 0.001 0.004 0.903 0.001 0.001 0.001 0.014 0.025 0.001 0.001 76 L 0.001 0.001 0.005 0.001 0.002 0.981 0.001 0.001 0.001 0.002 0.009 0.001 0.001 77 A 0.001 0.001 0.003 0.001 0.001 0.986 0.001 0.001 0.001 0.002 0.007 0.001 0.001 78 E 0.001 0.001 0.003 0.001 0.002 0.985 0.001 0.001 0.001 0.001 0.008 0.001 0.001 79 A 0.001 0.001 0.006 0.001 0.003 0.975 0.001 0.001 0.001 0.003 0.011 0.001 0.001 80 E 0.001 0.001 0.010 0.001 0.007 0.937 0.001 0.001 0.001 0.006 0.037 0.001 0.001 81 K 0.001 0.001 0.021 0.001 0.010 0.835 0.001 0.001 0.001 0.026 0.104 0.001 0.002 82 T 0.001 0.001 0.072 0.001 0.013 0.783 0.001 0.001 0.001 0.025 0.102 0.001 0.002 83 V 0.001 0.007 0.159 0.001 0.012 0.631 0.001 0.001 0.001 0.082 0.100 0.002 0.004 84 D 0.001 0.003 0.395 0.001 0.021 0.410 0.001 0.001 0.001 0.062 0.094 0.004 0.007 85 V 0.002 0.003 0.216 0.002 0.065 0.533 0.001 0.001 0.002 0.074 0.086 0.006 0.011 86 S 0.003 0.006 0.176 0.002 0.066 0.583 0.001 0.001 0.003 0.049 0.081 0.011 0.018 87 R 0.008 0.007 0.143 0.003 0.076 0.548 0.002 0.001 0.008 0.056 0.085 0.027 0.037 88 L 0.007 0.006 0.249 0.011 0.040 0.459 0.002 0.001 0.010 0.074 0.074 0.023 0.045 89 R 0.011 0.004 0.239 0.011 0.043 0.403 0.003 0.001 0.018 0.087 0.092 0.043 0.044 90 R 0.033 0.014 0.230 0.010 0.026 0.281 0.009 0.002 0.040 0.093 0.053 0.049 0.159 91 L 0.022 0.017 0.345 0.004 0.015 0.157 0.007 0.001 0.061 0.053 0.018 0.198 0.102 92 V 0.020 0.028 0.400 0.004 0.015 0.127 0.010 0.001 0.062 0.025 0.024 0.053 0.231 93 T 0.035 0.024 0.364 0.018 0.031 0.125 0.013 0.002 0.037 0.060 0.065 0.056 0.170 94 Q 0.017 0.013 0.406 0.006 0.025 0.075 0.005 0.001 0.023 0.169 0.069 0.121 0.071 95 S 0.003 0.010 0.553 0.001 0.020 0.044 0.001 0.001 0.007 0.183 0.092 0.008 0.077 96 T 0.001 0.008 0.852 0.001 0.003 0.011 0.001 0.001 0.003 0.087 0.018 0.010 0.007 97 P 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.002