Best Alignments for T0311

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1utxA/T0311-1utxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1utxA/T0311-1utxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4658e-081.20e-25 a.35.1.3
2b5aA/T0311-2b5aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b5aA/T0311-2b5aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8652e-089.89e-27
1y7yA/T0311-1y7yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y7yA/T0311-1y7yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4130e-071.15e-24
1adr/T0311-1adr-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1adr/T0311-1adr-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3650e-061.98e-24 1r69 a.35.1.2
2a6cA/T0311-2a6cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a6cA/T0311-2a6cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9762e-067.69e-20
1y9qA/T0311-1y9qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y9qA/T0311-1y9qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1748e-061.32e-19
1b0nA/T0311-1b0nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b0nA/T0311-1b0nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2666e-051.31e-21 1b0nA a.34.1.1
a.35.1.3
1dwkA/T0311-1dwkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dwkA/T0311-1dwkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1758e-053.32e-21 1dw9A a.35.1.4
d.72.1.1
1zzcA/T0311-1zzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zzcA/T0311-1zzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1932e-053.60e-19
2bnmA/T0311-2bnmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bnmA/T0311-2bnmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3158e-056.72e-20

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001