# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1utxA 66 4.52e-06 a.35.1.3 108034 2b5aA 77 4.26e-05 1lmb3 92 6.85e-05 1lmb3 2a6cA 83 1.26e-04 1y7yA 74 1.75e-04 1hlvA 131 1.32e-03 a.4.1.7,a.4.1.7 65854,65855 1b0nA 111 6.03e-03 1b0nA a.34.1.1,a.35.1.3 17001,17064 1y9qA 192 7.12e-03 1cjgA 62 1.02e-02 1pru a.35.1.5 17112 1r69 69 1.04e-02 1r69 a.35.1.2 17028 2bjcA 62 1.43e-02 1adr 76 1.52e-02 1r69 a.35.1.2 17042 1xnpA 202 2.64e-02 1rzrA 332 2.77e-02 1dwkA 156 4.26e-02 1dw9A a.35.1.4,d.72.1.1 17075,39606 2bnmA 198 5.95e-02 1umqA 81 6.97e-02 a.4.1.12 99625 1orc 71 7.89e-02 1orc a.35.1.2 17054 5croA 66 1.05e-01 1orc a.35.1.2 17044 1zzcA 198 1.29e-01 2cu3A 64 1.33e-01 1a6i 217 2.28e-01 2tct a.4.1.9,a.121.1.1 16066,19243 1hw1A 239 2.37e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1smtA 122 2.79e-01 1smtA a.4.5.5 16109 1r1tA 122 2.97e-01 a.4.5.5 104769 2cro 71 3.00e-01 1r69 a.35.1.2 17038 2auwA 170 3.18e-01 2tct 207 4.17e-01 2tct a.4.1.9,a.121.1.1 16063,19240 1qbjA 81 4.20e-01 1qbjA a.4.5.19 16155 1f75A 249 5.78e-01 1f75A c.101.1.1 59662 1pru 56 5.87e-01 1pru a.35.1.5 17104 1yseA 141 6.29e-01 1xsvA 113 6.58e-01 1u8bA 133 6.91e-01 1zgwA 139 6.91e-01 1s7oA 113 7.45e-01 a.4.13.3 105354 1vaxA 287 7.54e-01 1wpkA 146 7.82e-01 1s6lA 212 7.98e-01 1wh8A 111 1.17e+00 1z0xA 220 1.19e+00 1mixA 206 1.57e+00 a.11.2.1,b.55.1.5 79166,79167 2fm8A 135 1.60e+00 1ku3A 73 1.74e+00 a.4.13.2 73000 1j75A 67 1.85e+00 a.4.5.19 62673 1vddA 228 1.91e+00 e.49.1.1 108519 2cg4A 152 2.06e+00 1h6zA 913 2.09e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1ic8A 194 2.10e+00 a.4.1.1,a.35.1.1 76740,76741 1puzA 82 2.34e+00 a.218.1.1 104320 1qb2A 109 2.58e+00 1qb2A a.36.1.1 17125 1g55A 343 2.66e+00 1g55A c.66.1.26 34247 1jftA 340 2.83e+00 a.35.1.5,c.93.1.1 66652,66653 2fbhA 146 2.86e+00 1l3sA 580 2.95e+00 c.55.3.5,e.8.1.1 84521,84522 1rzsA 61 3.00e+00 a.35.1.2 105139 1res 43 3.23e+00 1ret a.4.1.2 16023 1j34B 123 3.31e+00 d.169.1.1 84049 1sfxA 109 3.44e+00 a.4.5.50 105505 1xwl 580 3.60e+00 1xwl c.55.3.5,e.8.1.1 33708,43001 1u4bA 580 3.61e+00 c.55.3.5,e.8.1.1 107664,107665 2bt2A 161 3.81e+00 1nk4A 580 3.83e+00 c.55.3.5,e.8.1.1 91923,91924 1zu1A 127 3.95e+00 1e0eA 55 4.15e+00 1wjcA a.4.10.1 59147 1khcA 147 4.49e+00 b.34.9.2 68608 1cfr 285 4.60e+00 1cfr c.52.1.7 33312 1bl0A 129 4.61e+00 1d5yA a.4.1.8,a.4.1.8 16053,16054 1nf3A 195 4.74e+00 c.37.1.8 85594 1u3eM 174 4.79e+00 d.4.1.3,d.285.1.1 107640,107641 1ngr 85 5.17e+00 1ngr a.77.1.2 18422 1jpaA 312 5.30e+00 d.144.1.7 67011 2acjA 66 5.48e+00 1t56A 216 5.89e+00 a.4.1.9,a.121.1.1 106428,106429 1vydA 116 6.03e+00 a.3.1.1 108900 1crb 134 6.07e+00 1hmt b.60.1.2 27220 1kyqA 274 6.15e+00 c.2.1.11,e.37.1.1 73281,73282 1z67A 135 7.22e+00 1fiqB 350 7.63e+00 1fiqB d.87.2.1,d.145.1.3 40229,41760 1sfcC 83 8.08e+00 1sfcC h.1.15.1 45645 1yw3A 208 8.09e+00 2cfxA 144 8.13e+00 1pufB 73 8.27e+00 a.4.1.1 95132 1fxjA 331 8.35e+00 1fwyA b.81.1.4,c.68.1.5 28062,34520 1ldg 316 9.19e+00 1ceqA c.2.1.5,d.162.1.1 30165,42132 2fx0A 201 9.93e+00 2g7uA 257 1.00e+01 1n8nA 212 1.01e+01 c.108.1.12 91706 1neq 74 1.04e+01 1neq a.35.1.2 17063 1bc5A 269 1.06e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1j5yA 187 1.07e+01 a.4.5.1,d.94.2.1 71592,71593 1kblA 873 1.08e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1af7 274 1.11e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1pmzA 86 1.15e+01 a.39.1.10 104195 2ffeA 311 1.18e+01 1dik 874 1.19e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1b72B 87 1.26e+01 1akhA a.4.1.1 16001 1w2yA 229 1.29e+01 a.204.1.1 109140 1myt 146 1.32e+01 1a6m a.1.1.2 15207 1uw4A 91 1.33e+01 d.58.7.4 100071 1q77A 138 1.36e+01 c.26.2.4 96023 2ao9A 155 1.42e+01 1r89A 437 1.42e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2g3bA 208 1.43e+01 1rmwA 212 1.43e+01 1f60A 458 1.45e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2b82A 211 1.50e+01 1w7jA 795 1.53e+01 1zk8A 183 1.54e+01 1gqzA 274 1.54e+01 d.21.1.1,d.21.1.1 83311,83312 1qsoA 149 1.54e+01 1qsmA d.108.1.1 40812 1qsmA 152 1.55e+01 1qsmA d.108.1.1 40808 1jbwA 428 1.57e+01 c.59.1.2,c.72.2.2 62860,62861 1bwzA 274 1.61e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1t2dA 322 1.70e+01 c.2.1.5,d.162.1.1 99084,99085 1t33A 224 1.72e+01 a.4.1.9,a.121.1.1 106295,106296 1hx1B 114 1.73e+01 1hx1B a.7.7.1 61350 2csbA 519 1.76e+01 1sluA 142 1.78e+01 1sluA b.16.1.1 23685 1x2iA 75 1.84e+01 2g8lA 299 1.88e+01 1n7sC 79 1.90e+01 h.1.15.1 80273 2a2cA 478 1.97e+01 1wqaA 455 2.00e+01 1fgs 428 2.05e+01 1fgs c.59.1.2,c.72.2.2 33959,34962 1qusA 322 2.05e+01 1ltm d.2.1.6 36991 1oohA 126 2.16e+01 a.39.2.1 93383 1qzzA 374 2.22e+01 a.4.5.29,c.66.1.12 96719,96720 2awiA 317 2.32e+01 2a2dA 478 2.34e+01 1dat 174 2.41e+01 2fha a.25.1.1 16677 1tn3 137 2.41e+01 1htn d.169.1.1 42423 1pht 85 2.61e+01 1ckaA b.34.2.1 24483 1mbmA 198 2.69e+01 b.47.1.3 78916 1y6uA 70 2.73e+01 1r7lA 110 2.78e+01 d.277.1.1 104837 2g5dA 422 2.79e+01 2carA 196 2.80e+01 1gvnB 287 2.83e+01 c.37.1.21 76354 1bia 321 2.87e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1x1nA 524 2.88e+01 1nxhA 126 3.00e+01 a.200.1.1 92300 1ez3A 127 3.00e+01 1dn1B a.47.2.1 17768 1howA 373 3.07e+01 1hcl d.144.1.7 41679 1in6A 334 3.07e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1f3iA 481 3.09e+01 1b7eA 1g2hA 61 3.13e+01 1g2hA a.4.1.12 60224 1oe9A 795 3.15e+01 b.34.3.1,c.37.1.9 92792,92793 2gkeA 274 3.18e+01 1o6yA 299 3.21e+01 d.144.1.7 81106 1lfo 128 3.23e+01 1hmt b.60.1.2 27223 1ulyA 192 3.26e+01 1ucsA 64 3.27e+01 b.85.1.1 88466 1x2mA 64 3.42e+01 1musA 477 3.43e+01 c.55.3.4 79494 2pvaA 345 3.45e+01 3pvaA d.153.1.3 41850 2c3vA 102 3.48e+01 1l6oA 95 3.51e+01 b.36.1.1 84534 1vhxA 150 3.51e+01 c.55.3.8 100712 1mqvA 125 3.55e+01 a.24.3.2 79415 1zxkA 98 3.55e+01 1v74B 87 3.65e+01 a.24.20.1 100443 1d5yA 292 3.72e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1gegA 256 3.91e+01 1ybvA c.2.1.2 29888 3pvaA 335 3.95e+01 3pvaA d.153.1.3 41854 1b4pA 217 4.00e+01 a.45.1.1,c.47.1.5 83158,83159 1wovA 250 4.01e+01 1j9iA 68 4.01e+01 a.6.1.5 71619 2f0aA 98 4.07e+01 1fmjA 351 4.07e+01 c.37.1.5 59879 1ef1C 90 4.12e+01 1ef1C a.137.5.1 19642 1xewY 172 4.15e+01 1in4A 334 4.22e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 2g7iA 125 4.22e+01 1xa3A 437 4.25e+01 1no1A 126 4.31e+01 a.179.1.1 85913 1j6pA 418 4.38e+01 b.92.1.4,c.1.9.9 77089,77090 1vi9A 299 4.44e+01 c.72.1.5 100750 1tfe 145 4.44e+01 1tfe d.43.1.1 38680 1p1mA 406 4.49e+01 b.92.1.4,c.1.9.9 87696,87697 1aisB 200 4.49e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1s7mA 174 4.51e+01 b.144.1.1 98649 6gsvA 217 4.61e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1c4zA 358 4.68e+01 1c4zA d.148.1.1 41766 1zq1A 438 4.73e+01 2g8yA 385 4.73e+01 1pk6C 129 4.77e+01 b.22.1.1 94803 1y5mA 276 4.79e+01 1kc6A 257 4.89e+01 c.52.1.19 68419 1mv8A 436 4.91e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1ci4A 89 5.03e+01 1qckA a.60.5.1 17970 2bl0C 142 5.06e+01 1o6aA 96 5.18e+01 b.139.1.1 92562 1lsuA 147 5.25e+01 c.2.1.9 74250 1hu3A 260 5.26e+01 1hu3A a.118.1.14 19137 2culA 232 5.28e+01 1fg7A 356 5.32e+01 1gewA c.67.1.1 59819 1ecfA 504 5.33e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1wt9B 123 5.43e+01 1gkzA 388 5.54e+01 a.29.5.1,d.122.1.4 65268,65269 1nr3A 122 5.58e+01 d.236.1.1 86092 1mkmA 249 5.67e+01 a.4.5.33,d.110.2.2 79242,79243 1i6xA 209 5.67e+01 a.4.5.4,b.82.3.2 83673,83674 1vpkA 378 5.67e+01 2audA 257 5.87e+01 1z23A 163 5.88e+01 1drw 273 6.03e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1k0sA 151 6.06e+01 b.40.7.1 67969 1y1uA 585 6.11e+01 1kskA 234 6.14e+01 d.66.1.5,d.265.1.3 72920,90389 2dg5A 366 6.16e+01 2ap3A 199 6.29e+01 1ypqA 135 6.33e+01 1rk6A 496 6.35e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2aorA 223 6.45e+01 1wwpA 119 6.46e+01 1mm0A 36 6.46e+01 g.3.7.4 85014 1n3kA 130 6.47e+01 a.77.1.4 79965 1jkoC 52 6.48e+01 a.4.1.2 66809 1m3sA 186 6.49e+01 c.80.1.3 78573 1m45A 148 6.52e+01 a.39.1.5 78598 1r5rA 119 6.54e+01 a.39.2.1 97104 1gd0A 122 6.57e+01 1dptA d.80.1.3 39834 1uch 230 6.66e+01 1uch d.3.1.6 37129 1m7jA 484 6.72e+01 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 1f52A 468 6.73e+01 1lgr d.15.9.1,d.128.1.1 37839,41169 1yw5A 177 6.75e+01 1p4wA 99 6.79e+01 a.4.6.2 87783 2rspA 124 6.81e+01 2rspB b.50.1.1 26771 1p3jA 217 6.82e+01 c.37.1.1,g.41.2.1 94022,94023 1oe8A 211 6.91e+01 a.45.1.1,c.47.1.5 86905,86906 1qjpA 171 7.11e+01 1bxwA f.4.1.1 43742 1uuhA 159 7.14e+01 d.169.1.4 100008 1v0aA 178 7.16e+01 3mddA 385 7.17e+01 3mdeA a.29.3.1,e.6.1.1 16592,42853 1el6A 219 7.20e+01 1el6B d.182.1.1 42606 1td2A 287 7.21e+01 c.72.1.5 106765 1q8yA 373 7.26e+01 d.144.1.7 96234 1o4tA 133 7.30e+01 b.82.1.9 86622 1ykhA 108 7.37e+01 2g9iA 249 7.47e+01 1bby 69 7.48e+01 2bby a.4.5.15 16149 1sk7A 198 7.50e+01 a.132.1.2 105671 1gnyA 153 7.52e+01 b.18.1.11 65404 1xhvA 257 7.52e+01 c.52.1.19 109597 1q08A 99 7.54e+01 a.6.1.3 95497 1jnuA 104 7.66e+01 d.110.3.6 71762 1wy5A 317 7.67e+01 1tujA 123 7.68e+01 1z6oA 212 7.73e+01 2a5yB 549 7.96e+01 1azo 232 8.03e+01 1azo c.52.1.14 33329 2avpA 70 8.07e+01 2f4iA 197 8.17e+01 1xngA 268 8.18e+01 1v7pB 128 8.34e+01 d.169.1.1 108407 1nw1A 429 8.38e+01 d.144.1.8 86286 1mmvB 419 8.39e+01 d.174.1.1 91318 2ctoA 93 8.39e+01 1dxjA 242 8.42e+01 1cnsA d.2.1.1 36244 1zvnA 99 8.43e+01 2eshA 118 8.46e+01 1j5sA 463 8.50e+01 c.1.9.8 71580 1xqoA 256 8.56e+01 1wriA 93 8.58e+01 1cf2O 337 8.59e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1z8sA 146 8.61e+01 2az4A 429 8.74e+01 1wn0A 145 8.79e+01 1fipA 98 8.82e+01 1fipA a.4.1.12 18980 1lswA 131 8.90e+01 d.110.3.2 78181 1ekeA 230 8.97e+01 1ekeA c.55.3.1 33572