# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 9.69e-45 c.82.1.1 86508 1euhA 475 4.44e-40 1euhA c.82.1.1 35369 1uzbA 516 7.14e-39 c.82.1.1 100220 2bjkA 516 7.78e-39 1o20A 427 7.68e-38 c.82.1.1 86556 1uxtA 501 1.09e-35 c.82.1.1 108125 1ez0A 510 8.57e-27 1eyyA c.82.1.1 35385 1kaeA 434 1.18e-10 c.82.1.2 72247 1ls1A 295 6.16e-01 a.24.13.1,c.37.1.10 78170,78171 1nrzA 164 9.49e-01 c.38.1.1 86131 1cqxA 403 1.39e+00 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1f3vA 179 2.47e+00 1f3vA d.58.22.1 39382 1nqkA 381 3.78e+00 c.1.16.4 92050 2ajtA 500 5.08e+00 1t6eX 381 5.70e+00 b.50.1.2 106564 1qopB 396 5.73e+00 2tysB c.79.1.1 35270 1fuiA 591 6.18e+00 1fuiA b.43.2.1,c.85.1.1 25674,35444 1x42A 232 6.86e+00 1u7zA 226 6.92e+00 1vbkA 307 6.95e+00 1mo9A 523 7.07e+00 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1nv8A 284 7.95e+00 c.66.1.30 86224 1cfr 285 8.50e+00 1cfr c.52.1.7 33312 1wiwA 290 8.53e+00 1gs5A 258 8.68e+00 c.73.1.2 70395 1gnxA 479 9.07e+00 c.1.8.4 76241 1mucA 373 9.26e+00 1mucA c.1.11.2,d.54.1.1 29236,38880 1suwA 249 9.89e+00 e.52.1.1 106027 1pw4A 451 1.08e+01 f.38.1.1 95198 1vbiA 344 1.10e+01 2g62A 325 1.11e+01 1wwkA 307 1.21e+01 1w8sA 263 1.24e+01 2cw5A 255 1.27e+01 1hqkA 154 1.28e+01 c.16.1.1 65902 1vecA 206 1.36e+01 c.37.1.19 100575 2bb6A 414 1.38e+01 1sek 378 1.45e+01 1sek e.1.1.1 42675 1rypH 205 1.48e+01 d.153.1.4 41876 2gjsA 176 1.48e+01 1vb3A 428 1.50e+01 1g8mA 593 1.56e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1lfpA 249 1.67e+01 e.39.1.1 73885 1lam 484 1.69e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1p0hA 318 1.85e+01 d.108.1.1 93866 1z0sA 278 1.90e+01 1wr8A 231 1.94e+01 1imjA 210 1.96e+01 c.69.1.23 71246 1vh6A 145 2.01e+01 a.24.19.1 100644 1gqeA 365 2.02e+01 e.38.1.1 70351 1o1zA 234 2.06e+01 c.1.18.3 86555 1gvhA 396 2.07e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1c3cA 429 2.10e+01 1c3cA a.127.1.1 19425 1y81A 138 2.13e+01 2bj7A 138 2.14e+01 1v4vA 376 2.26e+01 c.87.1.3 100313 1zedA 484 2.29e+01 1bykA 255 2.30e+01 1bykA c.93.1.1 35706 1a8q 274 2.35e+01 1brt c.69.1.12 34702 1jqnA 883 2.48e+01 c.1.12.3 77159 1s62A 106 2.61e+01 1uv0A 149 2.65e+01 d.169.1.1 100028 2c27A 315 2.70e+01 1nq7A 244 2.71e+01 a.123.1.1 92047 1qzzA 374 2.73e+01 a.4.5.29,c.66.1.12 96719,96720 1kk1A 410 2.75e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1jztA 246 2.76e+01 c.104.1.1 63319 1nxuA 333 2.79e+01 c.122.1.1 86389 1adt 356 2.85e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1x0rA 249 2.91e+01 1vmaA 306 2.98e+01 a.24.13.1,c.37.1.10 108887,108888 2c2aA 258 3.05e+01 1gx5A 536 3.12e+01 e.8.1.4 70682 1mqeA 207 3.15e+01 d.113.1.1 91394 2pth 193 3.39e+01 2pth c.56.3.1 33793 1jwiB 125 3.44e+01 d.169.1.1 67384 1y5eA 169 3.49e+01 2ah5A 210 3.50e+01 1in0A 163 3.51e+01 d.58.49.1,d.58.49.1 83694,83695 1r0mA 375 3.53e+01 c.1.11.2,d.54.1.1 104747,104748 1mla 309 3.61e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1xrsA 516 3.63e+01 2fymA 431 3.64e+01 1pii 452 3.66e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1r31A 428 3.67e+01 d.58.20.1,d.179.1.1 96897,96898 1wkyA 464 3.70e+01 1ujnA 348 3.70e+01 e.22.1.1 99460 1qlmA 316 3.83e+01 1qlmA d.147.1.1 41765 1rwhA 757 3.94e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1n97A 389 4.04e+01 a.104.1.1 80335 1n2zA 245 4.06e+01 c.92.2.2 79865 1sfxA 109 4.07e+01 a.4.5.50 105505 1ci9A 392 4.09e+01 e.3.1.1 64767 2c78A 405 4.13e+01 1jnyA 435 4.16e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1ejxA 100 4.26e+01 d.8.1.1 83182 1nuuA 252 4.52e+01 c.26.1.3 86209 1h8uA 117 4.56e+01 1h8uA d.169.1.1 60793 2gasA 307 4.64e+01 1wp5A 323 4.70e+01 1vdkA 466 4.71e+01 a.127.1.1 100561 1zjjA 263 4.88e+01 1gc0A 398 4.90e+01 c.67.1.3 70168 1l0wA 580 4.91e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1ywqA 200 5.00e+01 1v7pB 128 5.08e+01 d.169.1.1 108407 8abp 306 5.08e+01 8abp c.93.1.1 35647 1f35A 162 5.09e+01 1f35A b.94.1.1 59628 1q3eA 207 5.11e+01 b.82.3.2 95669 1lr0A 129 5.15e+01 d.212.1.1 74213 2asbA 251 5.20e+01 1gd8A 118 5.20e+01 d.188.1.1 60445 2ezvA 269 5.26e+01 2fbwC 141 5.30e+01 2a5yB 549 5.38e+01 1zt3A 80 5.43e+01 1rqbA 539 5.44e+01 a.5.7.2,c.1.10.5 105057,105058 1nw3A 416 5.57e+01 c.66.1.31 86288 2br9A 234 5.58e+01 1vctA 205 5.64e+01 1srvA 145 5.65e+01 1derA c.8.5.1 30817 1k5dB 201 5.65e+01 b.55.1.3 68169 1ta9A 450 5.74e+01 1y0uA 96 5.77e+01 1tf5A 844 5.85e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1g2qA 187 5.92e+01 c.61.1.1 65117 1h6dA 433 6.04e+01 c.2.1.3,d.81.1.5 65656,65657 1d1gA 168 6.06e+01 1d1gA c.71.1.1 34889 1oywA 523 6.19e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wmuB 146 6.21e+01 a.1.1.2 109417 1khdA 345 6.22e+01 a.46.2.1,c.27.1.1 77400,77401 1wtjA 343 6.30e+01 1qwoA 442 6.39e+01 c.60.1.2 104620 2bykB 128 6.43e+01 1bqcA 302 6.49e+01 1bqcA c.1.8.3 28831 2fvhA 120 6.53e+01 1wyuB 474 6.61e+01 1p5dX 463 6.62e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1vhsA 175 6.62e+01 d.108.1.1 100698 1i3cA 149 6.73e+01 c.23.1.1 71112 1olmA 403 6.76e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1i19A 561 6.83e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1u2wA 122 6.91e+01 1zrn 232 6.91e+01 1qq5A c.108.1.1 43323 1r9kA 172 6.91e+01 a.168.1.1 104869 2gp4A 628 6.95e+01 1xffA 240 6.95e+01 d.153.1.1 109580 1mpgA 282 6.96e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1t6nA 220 7.01e+01 c.37.1.19 106576 1uehA 253 7.14e+01 c.101.1.1 99259 1d3vA 323 7.21e+01 1d3vA c.42.1.1 32559 1knzA 164 7.43e+01 e.34.1.1 68709 1ewkA 490 7.46e+01 1ewkA c.93.1.1 35712 2fkiA 126 7.47e+01 1f60A 458 7.66e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1xviA 275 7.69e+01 1uujA 88 7.77e+01 a.221.1.1 108046 1tp9A 162 7.83e+01 1a53 247 8.01e+01 1a53 c.1.2.4 28564 1g6sA 427 8.17e+01 1eps d.68.2.2 39584 1vzwA 244 8.23e+01 1rypA 243 8.38e+01 1pmaA d.153.1.4 41932 2c2nA 339 8.39e+01 1xxlA 239 8.40e+01 2gaiA 633 8.48e+01 1q6uA 245 8.48e+01 d.26.1.1 95998 1s7zA 117 8.51e+01 a.159.3.1 98715 1q6hA 224 8.61e+01 d.26.1.1 95975 2cxcA 144 8.73e+01 1tmxA 293 8.86e+01 1mngA 203 8.89e+01 1avmA a.2.11.1,d.44.1.1 15776,38701