# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 1.29e-52 c.82.1.1 86508 1euhA 475 1.77e-47 1euhA c.82.1.1 35369 1uzbA 516 1.46e-46 c.82.1.1 100220 2bjkA 516 1.69e-46 1o20A 427 1.70e-44 c.82.1.1 86556 1uxtA 501 6.49e-43 c.82.1.1 108125 1ez0A 510 3.32e-31 1eyyA c.82.1.1 35385 1kaeA 434 2.58e-12 c.82.1.2 72247 1nrzA 164 8.32e-02 c.38.1.1 86131 1ls1A 295 9.02e-02 a.24.13.1,c.37.1.10 78170,78171 1cqxA 403 1.85e-01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1x0rA 249 4.47e-01 1f3vA 179 4.91e-01 1f3vA d.58.22.1 39382 1qopB 396 7.10e-01 2tysB c.79.1.1 35270 1nqkA 381 8.18e-01 c.1.16.4 92050 1p5dX 463 8.27e-01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1vbkA 307 9.22e-01 1suwA 249 1.09e+00 e.52.1.1 106027 1w8sA 263 1.42e+00 1zjjA 263 1.51e+00 1sek 378 1.56e+00 1sek e.1.1.1 42675 1wwkA 307 1.68e+00 1in0A 163 1.76e+00 d.58.49.1,d.58.49.1 83694,83695 1hqkA 154 2.25e+00 c.16.1.1 65902 1gvhA 396 2.26e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2gjsA 176 2.50e+00 1z0sA 278 2.61e+00 1imjA 210 2.83e+00 c.69.1.23 71246 1t6eX 381 3.09e+00 b.50.1.2 106564 2ajtA 500 3.14e+00 1p0hA 318 3.31e+00 d.108.1.1 93866 1zedA 484 3.39e+00 1y81A 138 3.45e+00 1nxuA 333 3.66e+00 c.122.1.1 86389 1cfr 285 3.75e+00 1cfr c.52.1.7 33312 1sflA 238 4.00e+00 1m8jA 181 4.05e+00 c.26.1.3 84875 2c27A 315 4.62e+00 1lfpA 249 4.64e+00 e.39.1.1 73885 1uv0A 149 4.90e+00 d.169.1.1 100028 1u7zA 226 5.31e+00 1upaA 573 5.35e+00 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1jdpA 441 5.62e+00 c.93.1.1 62906 1rlzA 369 5.89e+00 c.31.1.1 104989 2gasA 307 5.92e+00 1vh6A 145 5.98e+00 a.24.19.1 100644 1wekA 217 6.31e+00 1lt8A 406 6.51e+00 c.1.26.1 78186 1jx6A 342 6.62e+00 c.93.1.1 67406 1xx1A 285 6.74e+00 1v4vA 376 7.11e+00 c.87.1.3 100313 1c3cA 429 7.22e+00 1c3cA a.127.1.1 19425 1gs5A 258 7.44e+00 c.73.1.2 70395 1x42A 232 7.47e+00 1gudA 288 7.68e+00 c.93.1.1 83326 1y5eA 169 8.08e+00 1bykA 255 8.15e+00 1bykA c.93.1.1 35706 1xxlA 239 8.49e+00 1vb3A 428 8.67e+00 1jztA 246 9.30e+00 c.104.1.1 63319 1bqcA 302 9.37e+00 1bqcA c.1.8.3 28831 1rypH 205 9.39e+00 d.153.1.4 41876 1jqnA 883 9.47e+00 c.1.12.3 77159 1wiwA 290 9.70e+00 2pth 193 9.90e+00 2pth c.56.3.1 33793 1wurA 220 9.98e+00 1fuiA 591 1.02e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 2b0cA 206 1.04e+01 1tzzA 392 1.04e+01 1ej2A 181 1.05e+01 1f9aA c.26.1.3 59414 1vrvA 101 1.08e+01 1ujnA 348 1.08e+01 e.22.1.1 99460 1vdkA 466 1.10e+01 a.127.1.1 100561 1a8q 274 1.16e+01 1brt c.69.1.12 34702 1mucA 373 1.18e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1nw3A 416 1.19e+01 c.66.1.31 86288 1tp9A 162 1.27e+01 1dqpA 230 1.42e+01 1dqnA c.61.1.1 34069 1y791 680 1.42e+01 1hc7A 477 1.44e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1z4rA 168 1.46e+01 2ah5A 210 1.46e+01 1tf5A 844 1.59e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1wr8A 231 1.64e+01 1vbiA 344 1.67e+01 2bj7A 138 1.74e+01 2fymA 431 1.75e+01 1vecA 206 1.79e+01 c.37.1.19 100575 1h8uA 117 1.85e+01 1h8uA d.169.1.1 60793 1uehA 253 1.95e+01 c.101.1.1 99259 1ycoA 279 1.96e+01 1li4A 432 1.99e+01 c.2.1.4,c.23.12.3 84616,84617 1zu4A 320 1.99e+01 2fbwC 141 2.04e+01 1ta8A 332 2.05e+01 2g76A 335 2.05e+01 2br9A 234 2.07e+01 1d1gA 168 2.10e+01 1d1gA c.71.1.1 34889 1dp4A 435 2.18e+01 1dp4A c.93.1.1 35710 1r0mA 375 2.19e+01 c.1.11.2,d.54.1.1 104747,104748 1vhsA 175 2.26e+01 d.108.1.1 100698 1vmaA 306 2.37e+01 a.24.13.1,c.37.1.10 108887,108888 1urvA 190 2.38e+01 1lldA 319 2.38e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1f35A 162 2.39e+01 1f35A b.94.1.1 59628 1te2A 226 2.42e+01 c.108.1.6 106792 1mla 309 2.43e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1t6nA 220 2.44e+01 c.37.1.19 106576 1knzA 164 2.45e+01 e.34.1.1 68709 1im8A 244 2.47e+01 c.66.1.14 66212 2bneA 241 2.50e+01 1gqeA 365 2.53e+01 e.38.1.1 70351 1q6uA 245 2.54e+01 d.26.1.1 95998 1lam 484 2.64e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1mpgA 282 2.66e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 2c2nA 339 2.67e+01 1vajA 214 2.68e+01 1vctA 205 2.72e+01 1ejxA 100 2.74e+01 d.8.1.1 83182 1mo9A 523 2.77e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1mrg 263 2.79e+01 1mrj d.165.1.1 42183 1i3cA 149 2.82e+01 c.23.1.1 71112 1srvA 145 2.86e+01 1derA c.8.5.1 30817 2f1fA 164 2.87e+01 1q6hA 224 2.88e+01 d.26.1.1 95975 1qzzA 374 2.89e+01 a.4.5.29,c.66.1.12 96719,96720 1a53 247 2.90e+01 1a53 c.1.2.4 28564 1vqoV 71 2.91e+01 1ir6A 424 2.94e+01 c.107.1.2 71342 1g2qA 187 3.03e+01 c.61.1.1 65117 1j6oA 268 3.11e+01 c.1.9.12 77088 2bllA 345 3.13e+01 1rt8A 513 3.15e+01 a.40.1.1 105095 2fvhA 120 3.15e+01 1b00A 127 3.19e+01 3chy c.23.1.1 31122 1dyr 206 3.22e+01 1aoeA c.71.1.1 34916 1nv8A 284 3.23e+01 c.66.1.30 86224 2ezvA 269 3.25e+01 1uujA 88 3.33e+01 a.221.1.1 108046 1wfxA 186 3.34e+01 1go3E 187 3.43e+01 b.40.4.5,d.230.1.1 83054,83055 2af4C 333 3.45e+01 1j34A 129 3.54e+01 d.169.1.1 84048 1tvlA 454 3.54e+01 c.1.16.4 107366 1fviA 297 3.55e+01 1fviA b.40.4.6,d.142.2.1 25364,41578 1o1zA 234 3.56e+01 c.1.18.3 86555 2fkiA 126 3.60e+01 1tmxA 293 3.61e+01 1q7sA 117 3.63e+01 c.131.1.1 96055 1rxwA 336 3.63e+01 a.60.7.1,c.120.1.2 98059,98060 1ss4A 153 3.63e+01 d.32.1.6 105976 1q5xA 161 3.69e+01 c.8.7.1 95947 1v6sA 390 3.70e+01 c.86.1.1 100424 1qczA 169 3.73e+01 1qczA c.23.8.1 31276 1q3eA 207 3.73e+01 b.82.3.2 95669 1zs9A 261 3.76e+01 1jwiB 125 3.77e+01 d.169.1.1 67384 1kid 203 3.79e+01 1derA c.8.5.1 30771 1v7pB 128 3.79e+01 d.169.1.1 108407 1fp3A 402 3.79e+01 1fp3A a.102.1.3 18842 2c4nA 250 3.83e+01 1xfcA 384 3.85e+01 2f4lA 297 3.87e+01 1nw1A 429 3.94e+01 d.144.1.8 86286 1zt3A 80 3.95e+01 1r64A 481 3.96e+01 b.18.1.20,c.41.1.1 97140,97141 1wv2A 265 4.00e+01 1zvpA 133 4.06e+01 1qo7A 394 4.07e+01 1qo7A c.69.1.11 34697 1l1lA 739 4.10e+01 c.7.1.4 73470 1k66A 149 4.11e+01 c.23.1.1 90941 1g6sA 427 4.16e+01 1eps d.68.2.2 39584 1xeaA 323 4.17e+01 c.2.1.3,d.81.1.5 109572,109573 1j1iA 296 4.30e+01 c.69.1.10 83977 1wkyA 464 4.35e+01 1vl5A 260 4.36e+01 c.66.1.41 108720 1atg 231 4.41e+01 1atg c.94.1.1 35834 1ftrA 296 4.45e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 2bykB 128 4.47e+01 8abp 306 4.50e+01 8abp c.93.1.1 35647 1ix9A 205 4.52e+01 a.2.11.1,d.44.1.1 76899,76900 1olmA 403 4.53e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1azsA 220 4.57e+01 1azsA d.58.29.1 39416 1uslA 170 4.61e+01 c.121.1.1 99871 1r9kA 172 4.61e+01 a.168.1.1 104869 1bouA 139 4.62e+01 1bouA a.88.1.1 18521 1s3eA 520 4.64e+01 c.3.1.2,d.16.1.5 98426,98427 1t0bA 252 4.68e+01 c.23.16.6 106199 1jyeA 349 4.68e+01 c.93.1.1 67455 1g8mA 593 4.69e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1s62A 106 4.70e+01 1luaA 287 4.72e+01 c.2.1.7,c.58.1.4 78216,78217 2cw9A 194 4.73e+01 1f4pA 147 4.79e+01 5nul c.23.5.1 59651 2dri 271 4.80e+01 2dri c.93.1.1 35637 1atzA 189 4.85e+01 1atzA c.62.1.1 34132 2c78A 405 4.93e+01 1o50A 157 4.94e+01 d.37.1.1,d.37.1.1 92478,92479 1xdpA 687 4.99e+01 2dc3A 193 5.00e+01 1zsyA 357 5.02e+01 1pw4A 451 5.03e+01 f.38.1.1 95198 1n97A 389 5.04e+01 a.104.1.1 80335 1yeyA 444 5.05e+01 1xkyA 301 5.06e+01 1js3A 486 5.07e+01 c.67.1.6 67215 1cs1A 386 5.07e+01 1ibjA c.67.1.3 34399 1fnnA 389 5.12e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1iomA 377 5.14e+01 a.103.1.1 83698 1g8aA 227 5.17e+01 c.66.1.3 90506 1pii 452 5.21e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1kjqA 391 5.22e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2bb6A 414 5.22e+01 1jkmB 361 5.23e+01 1jkmA c.69.1.2 34634 1yksA 440 5.28e+01 1evyA 366 5.30e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 2gp4A 628 5.42e+01 1lzjA 292 5.42e+01 c.68.1.9 74352 1y0kA 209 5.60e+01 1y0uA 96 5.62e+01 1dkuA 317 5.66e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1t5oA 351 5.67e+01 c.124.1.5 106459 1o08A 221 5.69e+01 c.108.1.6 86525 1lr0A 129 5.72e+01 d.212.1.1 74213 1v8bA 479 5.72e+01 2fs3A 282 5.74e+01 1vrmA 325 5.75e+01 4eugA 229 5.76e+01 3eugA c.18.1.1 31019 1othA 321 5.82e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1q92A 197 5.82e+01 c.108.1.8 96250 1zx4A 192 5.83e+01 1wlsA 328 5.84e+01 1wxxA 382 5.86e+01 1brt 277 5.98e+01 1brt c.69.1.12 34699 1ve0A 134 6.08e+01 1sqhA 312 6.10e+01 d.108.1.5 98966 1wyuA 438 6.12e+01 1x7oA 287 6.12e+01 1s7iA 124 6.20e+01 d.58.4.9 105353 1aisB 200 6.27e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1zh5A 195 6.30e+01 2bl9A 238 6.35e+01 1wy7A 207 6.37e+01 1vzwA 244 6.37e+01 1f2tB 148 6.40e+01 1f2tB 2fr1A 486 6.43e+01 1evsA 187 6.49e+01 1evsA a.26.1.1 16845 1oj4A 283 6.51e+01 d.14.1.5,d.58.26.5 93083,93084 1oi7A 288 6.53e+01 c.2.1.8,c.23.4.1 87049,87050 1bd0A 388 6.55e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1c96A 753 6.56e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1ku1A 230 6.58e+01 a.118.3.1 72996 2b3yA 888 6.64e+01 1gxjA 186 6.66e+01 d.215.1.1 70707 1go4A 205 6.67e+01 d.135.1.1 70292 2f94F 350 6.67e+01 1a3c 181 6.70e+01 1a3c c.61.1.1 34095 1eziA 228 6.78e+01 1eyrA c.68.1.13 34512 1t5hX 504 6.81e+01 e.23.1.1 106449 1jbkA 195 6.87e+01 c.37.1.20 71631 2g62A 325 6.93e+01 2fy7A 287 7.11e+01 2bw3A 534 7.12e+01 1hkhA 279 7.13e+01 c.69.1.12 90628 1zd7A 159 7.17e+01 1xtyA 120 7.20e+01 1q77A 138 7.28e+01 c.26.2.4 96023 1o5zA 442 7.35e+01 c.59.1.2,c.72.2.2 92530,92531 1wd6A 123 7.38e+01 2bvfA 459 7.40e+01 1oxkB 134 7.42e+01 c.23.1.1 93691 1k5dB 201 7.48e+01 b.55.1.3 68169 1aep 161 7.49e+01 1aep a.63.1.1 18139 1g5tA 196 7.49e+01 1g5rA c.37.1.11 32366 1xfjA 261 7.52e+01 d.194.1.2 109585 1vljA 407 7.61e+01 e.22.1.2 108832 1xrsA 516 7.67e+01 1xrkA 124 7.75e+01 1fo8A 343 7.77e+01 1foaA c.68.1.10 59927 1tiqA 180 7.78e+01 d.108.1.1 107010 1gd8A 118 7.80e+01 d.188.1.1 60445 1rkd 309 7.82e+01 1rkd c.72.1.1 34928 1bkpA 278 7.84e+01 1bkpA d.117.1.1 41029 1sqrA 95 7.87e+01 1vns 609 7.91e+01 1vns a.111.1.3 19061 1kllA 130 7.92e+01 d.32.1.2 72720 2cw5A 255 8.01e+01 1ywqA 200 8.05e+01 1nm2A 317 8.08e+01 c.19.1.1,d.58.23.1 80654,80655 2gshA 414 8.17e+01 1ta9A 450 8.22e+01 1wteA 272 8.22e+01 1ogwA 76 8.22e+01 d.15.1.1 87001 1ep3B 262 8.30e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1l0wA 580 8.36e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1q0uA 219 8.37e+01 c.37.1.19 95512 1t6sA 162 8.41e+01 1t98A 287 8.44e+01 2ar0A 541 8.45e+01 1grj 158 8.46e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1zgzA 122 8.46e+01 1f60A 458 8.51e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1iq4A 179 8.52e+01 1iq4A d.77.1.1 62641 1m4iA 181 8.57e+01 d.108.1.1 74457 1kao 167 8.57e+01 1ctqA c.37.1.8 32014 1l3iA 192 8.65e+01 c.66.1.22 77676 1x1iA 752 8.67e+01 2a8nA 144 8.72e+01 2brcA 214 8.74e+01 1gc0A 398 8.83e+01 c.67.1.3 70168 1pj5A 830 8.85e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1onrA 316 8.87e+01 1onrA c.1.10.1 29169 2g8yA 385 8.88e+01 1zowA 313 8.90e+01 1h4vB 421 8.91e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1rhcA 330 8.95e+01 c.1.16.3 97468