# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 5.68e-41 c.82.1.1 86508 1a4sA 503 7.74e-41 1bpwA c.82.1.1 35361 1wndA 495 3.54e-38 1euhA 475 1.02e-35 1euhA c.82.1.1 35369 1o20A 427 5.04e-35 c.82.1.1 86556 1ad3A 452 1.96e-32 1ad3A c.82.1.1 35335 1uzbA 516 5.31e-32 c.82.1.1 100220 2bjkA 516 5.74e-32 1uxtA 501 1.49e-31 c.82.1.1 108125 1ez0A 510 1.75e-19 1eyyA c.82.1.1 35385 1kaeA 434 3.88e-05 c.82.1.2 72247 1nqkA 381 1.45e+00 c.1.16.4 92050 2gp4A 628 2.84e+00 1y81A 138 4.85e+00 1f3vA 179 5.49e+00 1f3vA d.58.22.1 39382 2bllA 345 5.54e+00 2gjsA 176 7.58e+00 1z7bA 358 7.82e+00 1u9jA 358 8.96e+00 1igwA 434 1.06e+01 c.1.12.7 62370 1nxuA 333 1.08e+01 c.122.1.1 86389 1x0lA 333 1.08e+01 2bw3A 534 1.14e+01 1i3cA 149 1.21e+01 c.23.1.1 71112 1eg7A 557 1.31e+01 1eg7A c.37.1.10 32241 2gjlA 328 1.35e+01 1x0rA 249 1.51e+01 1fuiA 591 1.56e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1vecA 206 1.61e+01 c.37.1.19 100575 2cw9A 194 1.72e+01 2ng1 293 1.77e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1ehyA 294 1.88e+01 1ehyA c.69.1.11 34693 1ls1A 295 2.03e+01 a.24.13.1,c.37.1.10 78170,78171 1y5eA 169 2.22e+01 2g8lA 299 2.25e+01 1h8mA 140 2.40e+01 1h8mA d.110.4.1 60782 2ezvA 269 2.52e+01 1mtyB 384 2.61e+01 1mtyB a.25.1.2 16740 1yghA 164 2.70e+01 1yghA d.108.1.1 40802 1w8sA 263 2.70e+01 1hkhA 279 2.84e+01 c.69.1.12 90628 2pth 193 2.90e+01 2pth c.56.3.1 33793 1wy0A 342 2.92e+01 1abrA 251 2.98e+01 1mrj d.165.1.1 42196 1dt9A 437 3.04e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1kp8A 547 3.19e+01 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1gd8A 118 3.34e+01 d.188.1.1 60445 1sek 378 3.35e+01 1sek e.1.1.1 42675 1abv 134 3.36e+01 1abv a.70.1.1 18317 1j9yA 385 3.38e+01 1j9yA c.1.8.3 62791 1vcsA 102 3.39e+01 1nrzA 164 3.55e+01 c.38.1.1 86131 1kk1A 410 3.58e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1vmaA 306 3.64e+01 a.24.13.1,c.37.1.10 108887,108888 1hyeA 313 3.74e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1mkzA 172 3.87e+01 c.57.1.1 84998 8abp 306 4.12e+01 8abp c.93.1.1 35647 5abp 306 4.15e+01 8abp c.93.1.1 35651 1vajA 214 4.16e+01 1bqcA 302 4.20e+01 1bqcA c.1.8.3 28831 1mhyB 395 4.36e+01 1mtyB a.25.1.2 16781 1lfpA 249 4.40e+01 e.39.1.1 73885 2masA 314 4.58e+01 2masA c.70.1.1 34810 1x42A 232 4.65e+01 1sf9A 128 4.70e+01 b.34.15.1 98831 2erxA 172 4.72e+01 1wekA 217 4.74e+01 1wy7A 207 4.75e+01 2g76A 335 4.77e+01 1zpdA 568 4.80e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2a5yB 549 4.81e+01 1t6cA 315 4.82e+01 c.55.1.8,c.55.1.8 106558,106559 1nw1A 429 4.82e+01 d.144.1.8 86286 1bmtA 246 4.89e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 8dfr 189 4.98e+01 1aoeA c.71.1.1 34895 1eonA 245 5.06e+01 1rvaA c.52.1.2 33238 1hqkA 154 5.07e+01 c.16.1.1 65902 1j5yA 187 5.08e+01 a.4.5.1,d.94.2.1 71592,71593 1odzA 386 5.20e+01 c.1.8.3 86889 1a8q 274 5.25e+01 1brt c.69.1.12 34702 1ojxA 263 5.40e+01 c.1.10.1 93164 1jmvA 141 5.40e+01 c.26.2.4 66897 1kllA 130 5.41e+01 d.32.1.2 72720 1rvaA 244 5.45e+01 1rvaA c.52.1.2 33240 1wr8A 231 5.72e+01 1upaA 573 5.78e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2bvfA 459 5.78e+01 1pii 452 5.87e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1ra9 159 5.89e+01 1vdrA c.71.1.1 34820 1wwkA 307 6.02e+01 1gesA 450 6.05e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1k5dB 201 6.17e+01 b.55.1.3 68169 1bi5A 389 6.31e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1vpjA 192 6.32e+01 1jqnA 883 6.33e+01 c.1.12.3 77159 1z15A 344 6.36e+01 1fecA 490 6.36e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1r64A 481 6.48e+01 b.18.1.20,c.41.1.1 97140,97141 1qh8B 519 6.49e+01 1qguB c.92.2.3 35634 1kmvA 186 6.49e+01 c.71.1.1 72757 1vj5A 555 6.52e+01 c.108.1.2,c.69.1.11 100799,100800 1xviA 275 6.54e+01 1efdN 266 6.55e+01 1efdN c.92.2.1 35597 2f4lA 297 6.60e+01 1nzoA 363 6.94e+01 b.105.1.1,e.3.1.1 92383,92384 1suwA 249 7.07e+01 e.52.1.1 106027 1f61A 429 7.09e+01 1dquA c.1.12.7 29319 1tvzA 388 7.12e+01 c.95.1.2,c.95.1.2 107367,107368 1hh2P 344 7.13e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1in0A 163 7.17e+01 d.58.49.1,d.58.49.1 83694,83695 1tp9A 162 7.17e+01 1zu4A 320 7.24e+01 1n97A 389 7.44e+01 a.104.1.1 80335 1gs5A 258 7.48e+01 c.73.1.2 70395 2au3A 407 7.57e+01 1ewqA 765 7.67e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2cwcA 303 7.74e+01 1g6oA 330 7.76e+01 1g6oA c.37.1.11 32430 1vh6A 145 7.77e+01 a.24.19.1 100644 2a6cA 83 7.81e+01 1ghj 79 7.86e+01 1ghj b.84.1.1 28232 1xpkC 388 7.87e+01 1z0sA 278 7.92e+01 1qo7A 394 7.95e+01 1qo7A c.69.1.11 34697 2liv 344 8.03e+01 2liv c.93.1.1 35708 1i88A 389 8.07e+01 c.95.1.2,c.95.1.2 66070,66071 2b3yA 888 8.35e+01 1gvhA 396 8.35e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1rj9A 304 8.44e+01 a.24.13.1,c.37.1.10 97553,97554 1z4rA 168 8.46e+01 1r4xA 275 8.57e+01 b.1.10.3,d.105.1.2 97054,97055 1eyqA 222 8.70e+01 1eypA d.36.1.1 38534 1wwpA 119 8.72e+01 1z6fA 363 8.81e+01 1xrhA 351 8.95e+01