# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 1.01e-55 c.82.1.1 86508 1a4sA 503 1.56e-54 1bpwA c.82.1.1 35361 1wndA 495 4.85e-52 1o20A 427 3.64e-48 c.82.1.1 86556 1euhA 475 3.10e-47 1euhA c.82.1.1 35369 1ad3A 452 1.87e-42 1ad3A c.82.1.1 35335 1uzbA 516 3.51e-42 c.82.1.1 100220 2bjkA 516 3.67e-42 1uxtA 501 3.20e-41 c.82.1.1 108125 1ez0A 510 2.31e-26 1eyyA c.82.1.1 35385 1kaeA 434 1.08e-05 c.82.1.2 72247 1hqkA 154 9.14e-01 c.16.1.1 65902 1wwkA 307 1.57e+00 8dfr 189 1.85e+00 1aoeA c.71.1.1 34895 1zbmA 280 1.93e+00 1u7pA 164 2.10e+00 1j8yF 297 2.44e+00 1ng1 a.24.13.1,c.37.1.10 62747,62748 1xp8A 366 3.35e+00 2c3zA 222 3.91e+00 1j8mF 297 4.20e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1gx5A 536 4.30e+00 e.8.1.4 70682 1sx5A 244 4.54e+00 c.52.1.2 99023 1y5eA 169 4.69e+00 2af4C 333 5.20e+00 1ra9 159 5.97e+00 1vdrA c.71.1.1 34820 1w25A 459 5.98e+00 1rvaA 244 5.98e+00 1rvaA c.52.1.2 33240 1kw3B 292 6.46e+00 d.32.1.3,d.32.1.3 77549,77550 1ls1A 295 6.49e+00 a.24.13.1,c.37.1.10 78170,78171 2be3A 226 6.81e+00 1c2pA 576 6.82e+00 1quvA e.8.1.4 43117 4dfrA 159 6.89e+00 1vdrA c.71.1.1 34822 8abp 306 7.25e+00 8abp c.93.1.1 35647 1zczA 464 7.29e+00 2d0iA 333 7.48e+00 1a53 247 8.34e+00 1a53 c.1.2.4 28564 1kmvA 186 8.39e+00 c.71.1.1 72757 1eonA 245 8.39e+00 1rvaA c.52.1.2 33238 1uohA 226 8.51e+00 d.211.1.1 99690 1gxjA 186 8.72e+00 d.215.1.1 70707 1hh2P 344 9.44e+00 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2ng1 293 9.80e+00 1ng1 a.24.13.1,c.37.1.10 16962,32273 1gzsB 165 9.87e+00 a.168.1.1 76425 1lkdA 297 1.12e+01 d.32.1.3,d.32.1.3 78059,78060 1igs 248 1.13e+01 1a53 c.1.2.4 28565 1vk9A 151 1.14e+01 c.139.1.1 108640 1rdr 461 1.16e+01 1rdr e.8.1.4 43116 1xizA 159 1.18e+01 1jtvA 327 1.24e+01 c.2.1.2 84230 2f4lA 297 1.25e+01 1aisA 182 1.29e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1rj9A 304 1.34e+01 a.24.13.1,c.37.1.10 97553,97554 1ymqA 261 1.34e+01 1nktA 922 1.34e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1evsA 187 1.37e+01 1evsA a.26.1.1 16845 1wloA 136 1.43e+01 1han 297 1.44e+01 1han d.32.1.3,d.32.1.3 38506,38507 1z0sA 278 1.45e+01 1pii 452 1.48e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1w19A 160 1.49e+01 1fds 327 1.52e+01 1fds c.2.1.2 29838 1suwA 249 1.56e+01 e.52.1.1 106027 1y81A 138 1.64e+01 1x42A 232 1.66e+01 1xkfA 133 1.67e+01 1dqsA 393 1.68e+01 1dqsA e.22.1.1 43347 2amyA 246 1.86e+01 1orjA 130 1.89e+01 a.24.19.1 93456 1dciA 275 1.90e+01 1dciA c.14.1.3 30918 1nonA 179 1.96e+01 c.61.1.1 103868 1zmtA 254 2.01e+01 1quuA 250 2.03e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1xc3A 302 2.13e+01 1xznA 179 2.20e+01 2cxcA 144 2.24e+01 1fl2A 310 2.25e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 2f06A 144 2.27e+01 1auiB 169 2.27e+01 1auiB a.39.1.5 17325 1byfA 125 2.31e+01 1byfA d.169.1.1 42419 1j7xA 302 2.41e+01 c.14.1.2 66425 1wbhA 214 2.42e+01 2c0aA 214 2.42e+01 1vggA 161 2.43e+01 1m5yA 408 2.45e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 2f2tA 161 2.46e+01 1nxuA 333 2.51e+01 c.122.1.1 86389 1ta8A 332 2.55e+01 2f62A 161 2.66e+01 5abp 306 2.68e+01 8abp c.93.1.1 35651 1z23A 163 2.69e+01 1zchA 255 2.74e+01 2a0kA 161 2.75e+01 1lj5A 379 2.76e+01 e.1.1.1 73928 1z2lA 423 2.81e+01 1o9rA 162 3.05e+01 a.25.1.1 86706 2cbiA 594 3.06e+01 1euaA 213 3.08e+01 1fwrA c.1.10.1 29155 1d8wA 426 3.14e+01 1de5A c.1.15.2 29394 1uw4B 248 3.16e+01 a.118.1.14 100072 1y5hA 133 3.21e+01 1cqxA 403 3.22e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1o5kA 306 3.24e+01 c.1.10.1 92504 1tqhA 247 3.24e+01 c.69.1.29 107225 2b0jA 358 3.29e+01 1wy0A 342 3.37e+01 3daaA 277 3.40e+01 1daaA e.17.1.1 43272 1vljA 407 3.46e+01 e.22.1.2 108832 1x0rA 249 3.48e+01 2ck3D 482 3.58e+01 1r4xA 275 3.60e+01 b.1.10.3,d.105.1.2 97054,97055 2b0cA 206 3.64e+01 1o1zA 234 3.70e+01 c.1.18.3 86555 1vl4A 447 3.72e+01 d.283.1.1 108718 1e79D 482 3.73e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 2bogX 286 3.76e+01 1r6fA 310 3.80e+01 e.46.1.1 97149 1mkzA 172 3.90e+01 c.57.1.1 84998 1cliA 345 3.96e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1l7aA 318 3.97e+01 c.69.1.25 77772 1d2eA 397 3.97e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1gvhA 396 4.01e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1jnyA 435 4.05e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1h8eD 482 4.06e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1r7lA 110 4.09e+01 d.277.1.1 104837 4xis 387 4.13e+01 4xis c.1.15.3 29421 1cx4A 305 4.27e+01 b.82.3.2,b.82.3.2 59099,59100 1oyzA 280 4.29e+01 a.118.1.16 93775 1xg8A 111 4.48e+01 1vcsA 102 4.48e+01 1f3vA 179 4.56e+01 1f3vA d.58.22.1 39382 1oedC 260 4.57e+01 f.36.1.1 86913 1hyeA 313 4.62e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 2bnmA 198 4.71e+01 1wcrA 103 4.76e+01 1pujA 282 4.83e+01 c.37.1.8 88294 1vq0A 302 4.86e+01 1dowA 205 4.89e+01 1dovA a.24.9.1 16626 1gqiA 708 4.92e+01 c.1.8.10,d.92.2.2 76279,76280 1x54A 434 4.92e+01 1jmvA 141 4.98e+01 c.26.2.4 66897 1vzwA 244 5.00e+01 5nul 138 5.01e+01 5nul c.23.5.1 31191 3xis 387 5.01e+01 4xis c.1.15.3 29423 1vmaA 306 5.05e+01 a.24.13.1,c.37.1.10 108887,108888 1oi7A 288 5.11e+01 c.2.1.8,c.23.4.1 87049,87050 2ca6A 386 5.13e+01 1vi6A 208 5.18e+01 c.23.15.1 100736 1pjcA 361 5.25e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 2sas 185 5.29e+01 2sas a.39.1.5 17258 1pwxA 254 5.33e+01 c.2.1.2 95262 1r1dA 247 5.41e+01 c.69.1.29 96813 1txgA 335 5.49e+01 1hx1B 114 5.55e+01 1hx1B a.7.7.1 61350 1r64A 481 5.60e+01 b.18.1.20,c.41.1.1 97140,97141 1qhtA 775 5.61e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1olmA 403 5.61e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1t0bA 252 5.62e+01 c.23.16.6 106199 1efdN 266 5.63e+01 1efdN c.92.2.1 35597 1ez3A 127 5.68e+01 1dn1B a.47.2.1 17768 2ar0A 541 5.77e+01 1ww9A 392 5.78e+01 1qqfA 277 5.80e+01 1c3d a.102.4.4 18875 1bw0A 416 5.80e+01 1bw0A c.67.1.1 34385 1v77A 212 5.86e+01 c.6.3.2 108402 1gveA 327 6.06e+01 c.1.7.1 70597 2a7oA 112 6.21e+01 1mgtA 174 6.22e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1yghA 164 6.26e+01 1yghA d.108.1.1 40802 1qbgA 272 6.47e+01 1d4aA c.23.5.3 31227 1qtwA 285 6.56e+01 1qumA c.1.15.1 29392 1yoyA 175 6.67e+01 1vrmA 325 6.70e+01 1ynbA 173 6.78e+01 2ah6A 208 6.79e+01 1yrgA 385 6.90e+01 1yrgA c.10.1.2 30854 1zfpE 98 6.95e+01 1griA d.93.1.1 40465 1wy2A 351 6.99e+01 1kwmA 402 7.03e+01 c.56.5.1,d.58.3.1 73079,73080 1vdmA 153 7.06e+01 1jq5A 370 7.10e+01 e.22.1.2 67084 1ab4 477 7.10e+01 1ab4 e.11.1.1 43251 1swvA 267 7.18e+01 1g2rA 100 7.18e+01 1g2rA d.192.1.1 60231 1h6zA 913 7.25e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1t35A 191 7.30e+01 c.129.1.1 99108 1hh1A 143 7.37e+01 1gefA c.52.1.18 61036 1a8b 318 7.40e+01 1avc a.65.1.1 18171 1nv8A 284 7.43e+01 c.66.1.30 86224 1zedA 484 7.44e+01 1jigA 146 7.45e+01 a.25.1.1 71685 1jztA 246 7.67e+01 c.104.1.1 63319 1q5qA 259 7.73e+01 d.153.1.4 95904 1d4aA 273 7.84e+01 1d4aA c.23.5.3 31219 2ran 316 7.87e+01 1avc a.65.1.1 18170 1rqlA 267 7.87e+01 c.108.1.3 97750 1dj7A 117 7.89e+01 1dj7A g.36.1.1 44997 1nuuA 252 8.00e+01 c.26.1.3 86209 2ciaA 102 8.15e+01 1tc1A 220 8.25e+01 1tc1A c.61.1.1 34083 2f22A 144 8.26e+01 1x91A 153 8.28e+01 1sqhA 312 8.41e+01 d.108.1.5 98966 1qqcA 773 8.43e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1tzpA 255 8.49e+01 d.65.1.3 107520 1vjoA 393 8.50e+01 c.67.1.3 100827 1yx1A 264 8.59e+01 2fgeA 995 8.61e+01 1b00A 127 8.84e+01 3chy c.23.1.1 31122 1q2lA 939 8.86e+01 1yw0A 276 8.90e+01 2oatA 439 8.91e+01 2dkb c.67.1.4 34452 1qgiA 259 8.96e+01 1qgiA d.2.1.7 37001