# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 3.91e-46 c.82.1.1 86508 1a4sA 503 1.88e-45 1bpwA c.82.1.1 35361 1wndA 495 6.88e-43 1o20A 427 1.45e-39 c.82.1.1 86556 1euhA 475 1.62e-39 1euhA c.82.1.1 35369 1ad3A 452 3.87e-36 1ad3A c.82.1.1 35335 2bjkA 516 2.27e-35 1uzbA 516 2.46e-35 c.82.1.1 100220 1uxtA 501 1.20e-34 c.82.1.1 108125 1ez0A 510 9.52e-22 1eyyA c.82.1.1 35385 1kaeA 434 2.90e-06 c.82.1.2 72247 1nqkA 381 1.12e+00 c.1.16.4 92050 1x0rA 249 2.76e+00 1y81A 138 5.34e+00 2gjsA 176 5.93e+00 1w8sA 263 6.13e+00 2bw3A 534 6.69e+00 1f3vA 179 7.13e+00 1f3vA d.58.22.1 39382 1nxuA 333 8.02e+00 c.122.1.1 86389 1ra9 159 1.06e+01 1vdrA c.71.1.1 34820 1wwkA 307 1.09e+01 8dfr 189 1.25e+01 1aoeA c.71.1.1 34895 2gp4A 628 1.30e+01 1eg7A 557 1.34e+01 1eg7A c.37.1.10 32241 1gd8A 118 1.40e+01 d.188.1.1 60445 1ojxA 263 1.46e+01 c.1.10.1 93164 8abp 306 1.50e+01 8abp c.93.1.1 35647 1ehyA 294 1.51e+01 1ehyA c.69.1.11 34693 5abp 306 1.64e+01 8abp c.93.1.1 35651 2pth 193 1.66e+01 2pth c.56.3.1 33793 1igwA 434 1.71e+01 c.1.12.7 62370 2gjlA 328 1.73e+01 1r31A 428 1.75e+01 d.58.20.1,d.179.1.1 96897,96898 1y5eA 169 1.80e+01 1ls1A 295 1.90e+01 a.24.13.1,c.37.1.10 78170,78171 1vecA 206 1.93e+01 c.37.1.19 100575 2cw9A 194 2.01e+01 4dfrA 159 2.02e+01 1vdrA c.71.1.1 34822 1nv8A 284 2.04e+01 c.66.1.30 86224 1wy7A 207 2.26e+01 1a8q 274 2.27e+01 1brt c.69.1.12 34702 1n97A 389 2.33e+01 a.104.1.1 80335 1i3cA 149 2.37e+01 c.23.1.1 71112 1cfr 285 2.44e+01 1cfr c.52.1.7 33312 1vmaA 306 2.51e+01 a.24.13.1,c.37.1.10 108887,108888 1gvhA 396 2.62e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1yghA 164 2.80e+01 1yghA d.108.1.1 40802 1nrzA 164 3.04e+01 c.38.1.1 86131 1xrhA 351 3.06e+01 1h8mA 140 3.11e+01 1h8mA d.110.4.1 60782 2au3A 407 3.13e+01 2ng1 293 3.19e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 2g76A 335 3.21e+01 2a5yB 549 3.32e+01 1ek1A 554 3.35e+01 1cr6B c.69.1.11,c.108.1.2 34685,43335 2a6cA 83 3.50e+01 2bj7A 138 3.52e+01 1s62A 106 3.63e+01 1nw1A 429 3.64e+01 d.144.1.8 86286 1x0lA 333 3.71e+01 1qzzA 374 3.85e+01 a.4.5.29,c.66.1.12 96719,96720 1uurA 473 3.89e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1z7mA 344 4.13e+01 1a88A 275 4.30e+01 1brt c.69.1.12 34707 1jnyA 435 4.41e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1xfiA 367 4.49e+01 e.50.1.1 109584 1rypH 205 4.60e+01 d.153.1.4 41876 1j9yA 385 4.61e+01 1j9yA c.1.8.3 62791 1sek 378 4.68e+01 1sek e.1.1.1 42675 1abv 134 4.70e+01 1abv a.70.1.1 18317 1hqkA 154 4.85e+01 c.16.1.1 65902 1qhiA 366 4.86e+01 1qhiA c.37.1.1 31860 1fuiA 591 4.86e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1pii 452 4.99e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1kmvA 186 4.99e+01 c.71.1.1 72757 1hh2P 344 5.19e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1e2kA 331 5.21e+01 1qhiA c.37.1.1 31854 1dt9A 437 5.28e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1xxlA 239 5.39e+01 1lfpA 249 5.58e+01 e.39.1.1 73885 1pjcA 361 5.65e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 2etvA 346 5.83e+01 1ejxA 100 5.88e+01 d.8.1.1 83182 1kllA 130 5.95e+01 d.32.1.2 72720 2g62A 325 6.00e+01 1x42A 232 6.13e+01 2cxcA 144 6.37e+01 2ezvA 269 6.66e+01 2f4lA 297 6.81e+01 1gc0A 398 6.92e+01 c.67.1.3 70168 1wp5A 323 6.98e+01 1xp8A 366 7.07e+01 1suwA 249 7.12e+01 e.52.1.1 106027 1imjA 210 7.23e+01 c.69.1.23 71246 1xseA 295 7.26e+01 1ko7A 314 7.31e+01 c.98.2.1,c.91.1.2 72797,72798 1rdr 461 7.36e+01 1rdr e.8.1.4 43116 1vh6A 145 7.44e+01 a.24.19.1 100644 1j5yA 187 7.50e+01 a.4.5.1,d.94.2.1 71592,71593 1wr8A 231 7.70e+01 1mkzA 172 7.84e+01 c.57.1.1 84998 1ir6A 424 7.84e+01 c.107.1.2 71342 2g8yA 385 7.87e+01 1r4xA 275 7.87e+01 b.1.10.3,d.105.1.2 97054,97055 1n7oA 721 7.90e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1ubeA 349 7.95e+01 c.37.1.11,d.48.1.1 88412,88413 1kinA 366 8.12e+01 1l3iA 192 8.19e+01 c.66.1.22 77676 2ahuA 531 8.32e+01 1t7lA 766 8.40e+01 1vpgA 192 8.45e+01 1gv3A 248 8.52e+01 a.2.11.1,d.44.1.1 70585,70586 1oi2A 366 8.71e+01 c.119.1.2 103802 2c2aA 258 8.98e+01