# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 5.78e-41 c.82.1.1 86508 1a4sA 503 8.15e-41 1bpwA c.82.1.1 35361 1wndA 495 1.27e-38 1euhA 475 4.10e-36 1euhA c.82.1.1 35369 1o20A 427 1.61e-35 c.82.1.1 86556 1ad3A 452 3.59e-33 1ad3A c.82.1.1 35335 1uzbA 516 1.11e-32 c.82.1.1 100220 2bjkA 516 1.32e-32 1uxtA 501 3.29e-32 c.82.1.1 108125 1ez0A 510 7.81e-20 1eyyA c.82.1.1 35385 1kaeA 434 6.69e-06 c.82.1.2 72247 1y81A 138 1.09e+00 1sflA 238 1.18e+00 1sfjA 238 1.24e+00 1nqkA 381 1.27e+00 c.1.16.4 92050 1wwkA 307 1.41e+00 1x0rA 249 1.76e+00 1w8sA 263 2.06e+00 2gjsA 176 3.67e+00 2bw3A 534 4.24e+00 2g76A 335 5.35e+00 1hyeA 313 5.49e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1nrzA 164 5.56e+00 c.38.1.1 86131 1y5eA 169 5.82e+00 1eg7A 557 6.13e+00 1eg7A c.37.1.10 32241 1ojxA 263 6.33e+00 c.1.10.1 93164 1f3vA 179 7.34e+00 1f3vA d.58.22.1 39382 1o5zA 442 7.76e+00 c.59.1.2,c.72.2.2 92530,92531 2pth 193 7.98e+00 2pth c.56.3.1 33793 1nxuA 333 8.12e+00 c.122.1.1 86389 2gjlA 328 8.45e+00 5abp 306 8.51e+00 8abp c.93.1.1 35651 1vecA 206 8.68e+00 c.37.1.19 100575 1sek 378 9.58e+00 1sek e.1.1.1 42675 2bllA 345 9.62e+00 1wekA 217 1.01e+01 1xseA 295 1.05e+01 8dfr 189 1.10e+01 1aoeA c.71.1.1 34895 1igwA 434 1.11e+01 c.1.12.7 62370 1j5yA 187 1.16e+01 a.4.5.1,d.94.2.1 71592,71593 8abp 306 1.17e+01 8abp c.93.1.1 35647 1cqxA 403 1.20e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1z7bA 358 1.21e+01 1tf5A 844 1.23e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1u9jA 358 1.25e+01 1hqkA 154 1.31e+01 c.16.1.1 65902 1mhyB 395 1.31e+01 1mtyB a.25.1.2 16781 1wy7A 207 1.36e+01 1suwA 249 1.37e+01 e.52.1.1 106027 1xrhA 351 1.44e+01 1vajA 214 1.49e+01 1zpdA 568 1.60e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1tvzA 388 1.69e+01 c.95.1.2,c.95.1.2 107367,107368 2cw9A 194 1.74e+01 1jmvA 141 1.75e+01 c.26.2.4 66897 1efdN 266 1.80e+01 1efdN c.92.2.1 35597 1l3iA 192 1.95e+01 c.66.1.22 77676 2gp4A 628 2.01e+01 1q5qA 259 2.04e+01 d.153.1.4 95904 1mkzA 172 2.08e+01 c.57.1.1 84998 1p5dX 463 2.09e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1upaA 573 2.11e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1ls1A 295 2.13e+01 a.24.13.1,c.37.1.10 78170,78171 1xxlA 239 2.14e+01 1i3cA 149 2.21e+01 c.23.1.1 71112 2f4lA 297 2.26e+01 1t5oA 351 2.33e+01 c.124.1.5 106459 2bj7A 138 2.34e+01 1tp9A 162 2.39e+01 1r64A 481 2.42e+01 b.18.1.20,c.41.1.1 97140,97141 1olmA 403 2.44e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1gd8A 118 2.58e+01 d.188.1.1 60445 1imjA 210 2.61e+01 c.69.1.23 71246 1o6uA 403 2.69e+01 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1rzrA 332 2.90e+01 2b3yA 888 3.04e+01 1pjqA 457 3.19e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1kp8A 547 3.30e+01 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1fviA 297 3.39e+01 1fviA b.40.4.6,d.142.2.1 25364,41578 1in0A 163 3.46e+01 d.58.49.1,d.58.49.1 83694,83695 1bykA 255 3.51e+01 1bykA c.93.1.1 35706 1a8q 274 3.51e+01 1brt c.69.1.12 34702 1dt9A 437 3.54e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 3mag 307 3.61e+01 3mag c.66.1.25 34205 1n7oA 721 3.64e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1qzzA 374 3.66e+01 a.4.5.29,c.66.1.12 96719,96720 2au3A 407 3.66e+01 1xpkC 388 3.77e+01 1sftA 388 3.79e+01 1bd0A b.49.2.2,c.1.6.1 26482,28644 1vpjA 192 3.84e+01 2liv 344 3.84e+01 2liv c.93.1.1 35708 1x54A 434 3.92e+01 1rcuA 195 3.97e+01 c.129.1.1 97295 1abrA 251 4.03e+01 1mrj d.165.1.1 42196 1bd0A 388 4.11e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1kmvA 186 4.12e+01 c.71.1.1 72757 1x0lA 333 4.13e+01 1eguA 731 4.17e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1z4rA 168 4.20e+01 1h8mA 140 4.21e+01 1h8mA d.110.4.1 60782 1zu4A 320 4.22e+01 1vc4A 254 4.26e+01 c.1.2.4 100557 2bh9A 489 4.26e+01 1y0uA 96 4.29e+01 1z0sA 278 4.33e+01 1ehyA 294 4.33e+01 1ehyA c.69.1.11 34693 1z7mA 344 4.38e+01 1fuiA 591 4.48e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1qczA 169 4.48e+01 1qczA c.23.8.1 31276 1ewqA 765 4.48e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1gc0A 398 4.49e+01 c.67.1.3 70168 1z15A 344 4.52e+01 1j9yA 385 4.70e+01 1j9yA c.1.8.3 62791 1k2yX 463 4.76e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2ajtA 500 4.79e+01 1sxgA 280 4.82e+01 2d0iA 333 4.85e+01 1ra9 159 4.89e+01 1vdrA c.71.1.1 34820 1srvA 145 4.95e+01 1derA c.8.5.1 30817 1v6sA 390 4.97e+01 c.86.1.1 100424 1zjjA 263 4.99e+01 1x8gA 227 5.01e+01 1x8hA 228 5.07e+01 1n97A 389 5.07e+01 a.104.1.1 80335 1ta8A 332 5.16e+01 1q6hA 224 5.18e+01 d.26.1.1 95975 1hx1B 114 5.22e+01 1hx1B a.7.7.1 61350 1fxd 58 5.28e+01 1fxd d.58.1.4 38941 1evyA 366 5.36e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1pj5A 830 5.42e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2ah5A 210 5.46e+01 1vcsA 102 5.46e+01 1r4xA 275 5.47e+01 b.1.10.3,d.105.1.2 97054,97055 1q6uA 245 5.55e+01 d.26.1.1 95998 1rw6A 210 5.58e+01 a.47.4.1 105113 1jqnA 883 5.58e+01 c.1.12.3 77159 1q0uA 219 5.69e+01 c.37.1.19 95512 2ng1 293 5.71e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1ew2A 513 5.77e+01 1b8jA c.76.1.1 59525 1cfr 285 5.95e+01 1cfr c.52.1.7 33312 2ccmA 191 5.95e+01 1t35A 191 6.06e+01 c.129.1.1 99108 1vqoV 71 6.12e+01 1ve0A 134 6.16e+01 1jj2U 70 6.18e+01 1ffkS a.2.2.1 63106 1s72V 71 6.19e+01 a.2.2.1 105341 1rktA 205 6.25e+01 a.4.1.9,a.121.1.1 97623,97624 1vm8A 534 6.25e+01 1vh6A 145 6.25e+01 a.24.19.1 100644 1rrpB 134 6.27e+01 1rrpB b.55.1.3 26995 1xhkA 187 6.39e+01 1xuqA 212 6.43e+01 1gvhA 396 6.48e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2b0cA 206 6.66e+01 1zedA 484 6.69e+01 1nzoA 363 6.70e+01 b.105.1.1,e.3.1.1 92383,92384 2a14A 263 6.79e+01 1yghA 164 6.80e+01 1yghA d.108.1.1 40802 1grj 158 6.84e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1q77A 138 6.85e+01 c.26.2.4 96023 1z6fA 363 6.94e+01 1ku1A 230 6.98e+01 a.118.3.1 72996 1jx6A 342 7.14e+01 c.93.1.1 67406 2g8yA 385 7.16e+01 1t6nA 220 7.16e+01 c.37.1.19 106576 1m0wA 491 7.18e+01 c.30.1.4,d.142.1.6 78363,78364 1uwvA 433 7.20e+01 b.40.4.12,c.66.1.40 100128,100129 1wd6A 123 7.21e+01 1rypH 205 7.24e+01 d.153.1.4 41876 1wwpA 119 7.35e+01 1pii 452 7.36e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1atiA 505 7.37e+01 1atiA c.51.1.1,d.104.1.1 33196,40745 1rdr 461 7.47e+01 1rdr e.8.1.4 43116 1qexA 288 7.49e+01 1qexA b.32.1.1 24425 2a5yB 549 7.50e+01 1kllA 130 7.56e+01 d.32.1.2 72720 1mrg 263 7.64e+01 1mrj d.165.1.1 42183 1d1gA 168 7.64e+01 1d1gA c.71.1.1 34889 1ko7A 314 7.69e+01 c.98.2.1,c.91.1.2 72797,72798 1vddA 228 7.73e+01 e.49.1.1 108519 1iujA 106 7.79e+01 d.58.4.5 90701 1hh2P 344 7.85e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1jztA 246 7.86e+01 c.104.1.1 63319 1qh8B 519 7.88e+01 1qguB c.92.2.3 35634 2ahuA 531 7.92e+01 1wy0A 342 7.96e+01 1bouA 139 8.03e+01 1bouA a.88.1.1 18521 1q3eA 207 8.13e+01 b.82.3.2 95669 1o50A 157 8.14e+01 d.37.1.1,d.37.1.1 92478,92479 1wr8A 231 8.16e+01 1cbf 285 8.17e+01 1cbf c.90.1.1 35587 1go3E 187 8.28e+01 b.40.4.5,d.230.1.1 83054,83055 1l1lA 739 8.45e+01 c.7.1.4 73470 2a6cA 83 8.46e+01 1pwbA 177 8.46e+01 d.169.1.1,h.1.1.1 95212,95213 1dhs 344 8.46e+01 1dhs c.31.1.1 31727 1k3yA 221 8.50e+01 a.45.1.1,c.47.1.5 77245,77246 2ganA 190 8.53e+01 2cwcA 303 8.57e+01 1ejxA 100 8.57e+01 d.8.1.1 83182 1fcjA 322 8.66e+01 1oasA c.79.1.1 35289 1a8vA 121 8.66e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1ybhA 590 8.68e+01 2masA 314 8.71e+01 2masA c.70.1.1 34810 1vmaA 306 8.74e+01 a.24.13.1,c.37.1.10 108887,108888 2c78A 405 8.75e+01 1s7iA 124 8.78e+01 d.58.4.9 105353 1x42A 232 8.82e+01 2avnA 260 8.90e+01 1fp3A 402 8.93e+01 1fp3A a.102.1.3 18842