# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 7.66e-60 c.82.1.1 86508 1a4sA 503 2.47e-58 1bpwA c.82.1.1 35361 1wndA 495 4.96e-56 1o20A 427 1.82e-54 c.82.1.1 86556 1euhA 475 9.78e-51 1euhA c.82.1.1 35369 1ad3A 452 5.34e-47 1ad3A c.82.1.1 35335 1uxtA 501 4.29e-43 c.82.1.1 108125 2bjkA 516 1.58e-41 1uzbA 516 1.75e-41 c.82.1.1 100220 1ez0A 510 7.78e-27 1eyyA c.82.1.1 35385 1kaeA 434 1.71e-01 c.82.1.2 72247 2ab0A 205 5.15e+00 1dqsA 393 5.23e+00 1dqsA e.22.1.1 43347 1zbmA 280 5.30e+00 8dfr 189 5.81e+00 1aoeA c.71.1.1 34895 1j8yF 297 6.03e+00 1ng1 a.24.13.1,c.37.1.10 62747,62748 1wwkA 307 6.82e+00 1j8mF 297 7.45e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1eur 365 7.63e+00 1eut b.68.1.1 27607 1rdr 461 8.87e+00 1rdr e.8.1.4 43116 1kmvA 186 9.19e+00 c.71.1.1 72757 1qf5A 431 9.29e+00 1adeA c.37.1.10 32212 1hqkA 154 1.23e+01 c.16.1.1 65902 1eonA 245 1.48e+01 1rvaA c.52.1.2 33238 1rvaA 244 1.55e+01 1rvaA c.52.1.2 33240 1x0rA 249 1.64e+01 1x42A 232 1.74e+01 1gx5A 536 1.85e+01 e.8.1.4 70682 1wp5A 323 2.03e+01 1sx5A 244 2.09e+01 c.52.1.2 99023 1t7lA 766 2.11e+01 2byjA 439 2.39e+01 1u5tC 202 2.49e+01 a.4.5.54,a.4.5.54 107688,107689 1nnfA 309 2.55e+01 c.94.1.1 85903 1wcqA 601 2.55e+01 1oatA 439 2.59e+01 2dkb c.67.1.4 34461 1qnnA 191 2.73e+01 1avmA a.2.11.1,d.44.1.1 15792,38755 3cox 507 2.76e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1xizA 159 2.81e+01 2bylA 439 2.82e+01 2oatA 439 2.84e+01 2dkb c.67.1.4 34452 2fiuA 99 2.94e+01 1p8kZ 254 3.09e+01 d.95.2.1,d.95.2.1 94361,94362 1uesA 191 3.23e+01 a.2.11.1,d.44.1.1 107798,107799 1y81A 138 3.36e+01 1uohA 226 3.38e+01 d.211.1.1 99690 1xg8A 111 3.41e+01 1bia 321 3.41e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1j5yA 187 3.45e+01 a.4.5.1,d.94.2.1 71592,71593 1gxjA 186 3.59e+01 d.215.1.1 70707 1u7pA 164 3.60e+01 1m12A 84 3.85e+01 a.64.1.1 84745 1urjA 1136 3.87e+01 1vmaA 306 4.05e+01 a.24.13.1,c.37.1.10 108887,108888 2d0sA 79 4.08e+01 1o1zA 234 4.40e+01 c.1.18.3 86555 1vkcA 158 4.80e+01 1u5tA 233 4.86e+01 a.4.5.54,a.4.5.54 107684,107685 8tlnE 316 4.99e+01 1hyt d.92.1.2 59075 1u4gA 301 5.04e+01 d.92.1.2 107670 1mdc 133 5.14e+01 1hmt b.60.1.2 27198 1rj9A 304 5.15e+01 a.24.13.1,c.37.1.10 97553,97554 1mrp 309 5.26e+01 1mrp c.94.1.1 35796 1xwmA 217 5.28e+01 1bg1A 722 5.32e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1kw3B 292 5.44e+01 d.32.1.3,d.32.1.3 77549,77550 1lj5A 379 5.51e+01 e.1.1.1 73928 1i12A 160 5.62e+01 1i21A d.108.1.1 61515 1ezm 301 5.62e+01 1hyt d.92.1.2 58980 2d0iA 333 5.81e+01 2fgeA 995 5.95e+01 1nw1A 429 6.00e+01 d.144.1.8 86286 1dceB 331 6.08e+01 1dceB a.102.4.3 18872 1v8gA 329 6.24e+01 a.46.2.1,c.27.1.1 100505,100506 1s4nA 348 6.30e+01 c.68.1.16 98501 1q3eA 207 6.56e+01 b.82.3.2 95669 1w8oA 601 6.56e+01 1wy0A 342 6.81e+01 1byfA 125 6.83e+01 1byfA d.169.1.1 42419 2tmnE 316 6.93e+01 1hyt d.92.1.2 59055 1suwA 249 6.95e+01 e.52.1.1 106027 1ir6A 424 7.07e+01 c.107.1.2 71342 1kllA 130 7.12e+01 d.32.1.2 72720 2g76A 335 7.67e+01 1c2pA 576 7.68e+01 1quvA e.8.1.4 43117 2ganA 190 7.81e+01 1p5fA 189 8.06e+01 c.23.16.2 94142 2a7oA 112 8.45e+01 1o5oA 221 8.51e+01 c.61.1.1 92509 1rzuA 485 8.52e+01 c.87.1.8 105140 2axhA 242 8.59e+01 1y14B 171 8.66e+01 1jkmB 361 8.79e+01 1jkmA c.69.1.2 34634 1kngA 156 8.94e+01 c.47.1.10 72777 1cqxA 403 8.98e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562