# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zynA 202 3.97e-01 1esfA 233 4.72e-01 3seb b.40.2.2,d.15.6.1 25146,37735 1hyuA 521 5.71e-01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1dyqA 234 1.21e+00 3seb b.40.2.2,d.15.6.1 59140,59141 1igs 248 1.41e+00 1a53 c.1.2.4 28565 1juk 248 1.69e+00 1a53 c.1.2.4 28567 1a53 247 1.71e+00 1a53 c.1.2.4 28564 2c3zA 222 2.30e+00 1ma3A 253 3.43e+00 c.31.1.5 78883 2rslA 140 3.73e+00 2rslA c.53.1.1 33345 2fvtA 135 4.85e+00 1iz5A 249 5.11e+00 d.131.1.2,d.131.1.2 83834,83835 1souA 194 5.47e+00 c.124.1.6 105858 1ghtA 105 5.77e+00 2rslA c.53.1.1 60526 1ge8A 249 6.16e+00 1plq d.131.1.2,d.131.1.2 41398,41399 1gdtA 183 6.17e+00 2rslA a.4.1.2,c.53.1.1 16021,33348 1my6A 199 7.49e+00 a.2.11.1,d.44.1.1 85232,85233 1c0dA 358 8.10e+00 1eceA c.1.8.3 28815 1eceA 358 8.16e+00 1eceA c.1.8.3 28813 1m93A 55 8.32e+00 e.1.1.1 91235 1u2xA 474 9.17e+00 c.72.1.3 107622 1ockA 412 9.74e+00 c.117.1.1 86802 1fl2A 310 1.00e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1v30A 124 1.03e+01 1rwiA 270 1.04e+01 b.68.9.1 97987 1agnA 373 1.10e+01 2ohxA b.35.1.2,c.2.1.1 24737,29753 2d1uA 104 1.15e+01 1qhlA 227 1.20e+01 1qhlA c.37.1.12 32382 2fclA 169 1.49e+01 2ewrA 170 1.50e+01 1q59A 172 1.50e+01 f.1.4.1 95881 1sqsA 242 1.58e+01 c.23.5.5 98968 1j5vA 351 1.75e+01 c.72.1.1 71585 1mixA 206 1.81e+01 a.11.2.1,b.55.1.5 79166,79167 1rwzA 245 1.89e+01 d.131.1.2,d.131.1.2 98005,98006 2ifeA 100 1.94e+01 1tig d.68.1.1 39567 1c7nA 399 2.03e+01 1d2fA c.67.1.3 34413 2axwA 134 2.05e+01 1sr4B 261 2.25e+01 d.151.1.1 105949 1k38A 254 2.26e+01 e.3.1.1 84303 1es6A 296 2.27e+01 1es6A b.31.1.1,b.31.1.1 83048,83049 2a2pA 129 2.28e+01 1od8A 313 2.30e+01 c.1.8.3 86838 2awpA 198 2.33e+01 1h2cA 140 2.43e+01 b.31.1.1 83462 1ryjA 70 2.46e+01 d.15.3.2 98104 1thg 544 2.58e+01 1thg c.69.1.17 34763 2cxcA 144 2.64e+01 2pil 159 2.71e+01 2pil d.24.1.1 38376 1v0lA 313 2.73e+01 c.1.8.3 108207 1e0wA 313 2.74e+01 1taxA c.1.8.3 59150 1ay2 159 2.76e+01 2pil d.24.1.1 38377 1a0rP 245 2.82e+01 1b9yC c.47.1.6 33054 1xwvA 129 2.94e+01 1repC 251 3.10e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1tlk 154 3.15e+01 1tlk b.1.1.4 21707 1fhgA 154 3.23e+01 1tlk b.1.1.4 21706 1tzaA 134 3.23e+01 b.1.23.1 107468 1f13A 731 3.24e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21877,22163,22164,37107 1tr9A 341 3.36e+01 1o58A 303 3.43e+01 c.79.1.1 92491 1lwjA 441 3.45e+01 b.71.1.1,c.1.8.1 74303,74304 1mm4A 170 3.50e+01 f.4.1.2 79294 1smlA 269 3.55e+01 1smlA d.157.1.1 42053 2aioA 269 3.56e+01 1ltlA 279 3.64e+01 b.40.4.11 84701 1nxiA 132 3.67e+01 d.58.47.1 86381 1g8lA 411 3.81e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1a3wA 500 3.81e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 1bby 69 3.87e+01 2bby a.4.5.15 16149 1qlmA 316 3.92e+01 1qlmA d.147.1.1 41765 1wspA 84 3.92e+01 1evuA 731 4.01e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1vfsA 386 4.06e+01 b.49.2.2,c.1.6.1 108584,108585 1yiyA 429 4.14e+01 1qrkA 731 4.22e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21889,22187,22188,37119 1ur1A 378 4.26e+01 c.1.8.3 99804 1xedA 117 4.29e+01 1ri5A 298 4.33e+01 c.66.1.34 97502 2gw6A 123 4.38e+01 1ydmA 187 4.40e+01 1h72C 296 4.53e+01 d.14.1.5,d.58.26.1 60712,60713 1t9bA 677 4.72e+01 1ddf 127 4.76e+01 1ddf a.77.1.2 18423 1xyfA 436 4.78e+01 1taxA b.42.2.1,c.1.8.3 25577,28909 1t64A 377 4.85e+01 c.42.1.2 106543 1tf1A 198 4.89e+01 d.110.2.2 106826 1p8kZ 254 4.89e+01 d.95.2.1,d.95.2.1 94361,94362 1pnsC 206 5.01e+01 i.1.1.1 88170 1vqoI 162 5.12e+01 1ex0A 731 5.12e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1exg 110 5.13e+01 1exg b.2.2.1 22387 1gguA 731 5.16e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21885,22179,22180,37115 2bby 69 5.19e+01 2bby a.4.5.15 16148 1tiqA 180 5.22e+01 d.108.1.1 107010 1f8nA 839 5.26e+01 1yge a.119.1.1,b.12.1.1 59703,59704 1xhfA 123 5.27e+01 1xfcA 384 5.28e+01 1fieA 731 5.34e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21879,22167,22168,37109 2aw2A 120 5.42e+01 1nijA 318 5.42e+01 c.37.1.10,d.237.1.1 85741,85742 1flcA 432 5.50e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1fwkA 296 5.67e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 1id0A 152 5.70e+01 d.122.1.3 66111 1xttA 216 5.73e+01 1o0pA 104 5.83e+01 d.58.7.1 86535 1a9v 129 5.84e+01 1a9v b.1.18.7 21946 1qi9A 556 5.95e+01 1qhbA a.111.1.2 19053 1m07A 111 5.96e+01 d.5.1.1 78328 1pqxA 91 5.97e+01 d.267.1.1 104296 1xsqA 168 5.98e+01 2b33A 140 5.99e+01 1bc4 111 5.99e+01 1onc d.5.1.1 37279 1iscA 192 6.06e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1isaA 192 6.07e+01 1avmA a.2.11.1,d.44.1.1 15731,38724 1d2oA 187 6.11e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1njhA 119 6.16e+01 b.128.1.1 85787 1ej0A 180 6.18e+01 1ej0A c.66.1.2 34179 1c52 131 6.43e+01 1c52 a.3.1.1 15810 1aogA 485 6.47e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 2adbA 148 6.55e+01 1d2pA 373 6.64e+01 1d2oA b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1 22629,22630,22631,22632 1fht 116 6.66e+01 1urnA d.58.7.1 39157 2f4mA 295 6.68e+01 2g6tA 306 6.74e+01 1bxlA 181 6.77e+01 1maz f.1.4.1 43396 5gcnA 166 6.79e+01 1yghA d.108.1.1 40807 1a99A 344 6.92e+01 1pot c.94.1.1 35812 2gfgA 193 6.97e+01 1z0wA 207 7.11e+01 1wmhA 89 7.17e+01 1xewY 172 7.26e+01 1yizA 429 7.26e+01 1vddA 228 7.34e+01 e.49.1.1 108519 2b7eA 59 7.39e+01 1mg2B 131 7.41e+01 g.21.1.1 79060 1vkuA 100 7.41e+01 a.28.1.1 108690 1qdlB 195 7.42e+01 1qdlB c.23.16.1 31437 1ggtB 731 7.45e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21882,22173,22174,37112 1cx0A 95 7.51e+01 1urnA d.58.7.1 39158 1xkiA 162 7.56e+01 1bc9 200 7.66e+01 1pbv a.118.3.1 19180 1ygs 234 7.71e+01 1ygs b.26.1.1 23907 2g9iA 249 7.72e+01 1cby 259 7.77e+01 1cby d.103.1.1 40705 1tq5A 242 7.81e+01 1urnA 97 7.86e+01 1urnA d.58.7.1 39153 2fh7A 595 7.88e+01 1h8vA 218 7.91e+01 2nlrA b.29.1.11 60795 2bbkL 125 7.92e+01 2bbkL g.21.1.1 44882 1ggwA 140 8.00e+01 1ggwA a.39.1.5 60490 1ap0 73 8.02e+01 1ap0 b.34.13.2 37475 1oa2A 218 8.06e+01 b.29.1.11 86721 1x8dA 104 8.13e+01 2g0uA 92 8.14e+01 1hfbA 370 8.42e+01 c.1.10.4 76706 2bg5A 324 8.42e+01 1sek 378 8.50e+01 1sek e.1.1.1 42675 1of8A 370 8.51e+01 c.1.10.4 92819 1bib 321 8.52e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16084,24448,40788 1fgqA 839 8.54e+01 1yge a.119.1.1,b.12.1.1 59826,59827 1kal 29 8.67e+01 g.3.3.1 44077 1pbjA 125 8.74e+01 d.37.1.1,d.37.1.1 94414,94415 1bia 321 8.80e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1focA 132 8.85e+01 1c52 a.3.1.1 15812 1c7sA 858 8.88e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1qba 858 8.89e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21810,22406,29009,40408 2fj6A 82 8.96e+01 1g6gA 127 8.97e+01 1g6gA b.26.1.2 23916