# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g0uA 92 4.28e-01 1g4yB 101 2.21e+00 1g4yB f.15.1.1 60251 1v30A 124 2.60e+00 1souA 194 3.11e+00 c.124.1.6 105858 1ztsA 139 3.59e+00 1nxiA 132 3.63e+00 d.58.47.1 86381 1u6tA 121 3.72e+00 2a2pA 129 4.31e+00 2d1uA 104 4.50e+00 1hyuA 521 4.85e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1q59A 172 5.52e+00 f.1.4.1 95881 2axwA 134 5.64e+00 1ma3A 253 6.94e+00 c.31.1.5 78883 1svpA 161 7.03e+00 1svpA b.47.1.3 26384 1wspA 84 8.05e+00 1ddf 127 8.08e+00 1ddf a.77.1.2 18423 2snv 151 8.94e+00 1svpA b.47.1.3 26394 1mm4A 170 8.98e+00 f.4.1.2 79294 1wmhA 89 9.37e+00 1ld4A 264 9.44e+00 i.6.1.1 77886 2etxA 209 9.69e+00 2adoA 196 1.04e+01 1zynA 202 1.14e+01 1pms 136 1.20e+01 1awe b.55.1.1 26966 1n91A 108 1.26e+01 d.206.1.1 80326 2b3wA 168 1.26e+01 2f60K 64 1.28e+01 2f4mA 295 1.36e+01 2fj6A 82 1.45e+01 2aw2A 120 1.54e+01 1repC 251 1.58e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2fvtA 135 1.62e+01 1ghtA 105 1.68e+01 2rslA c.53.1.1 60526 1pls 113 1.72e+01 1pls b.55.1.1 26965 1tzaA 134 1.87e+01 b.1.23.1 107468 1vd2A 89 1.90e+01 d.15.2.2 108517 1d2oA 187 1.97e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 2ez6A 221 2.02e+01 1xedA 117 2.22e+01 1qvcA 145 2.25e+01 3ullA b.40.4.3 25284 1hrkA 359 2.26e+01 1hrkA c.92.1.1 61228 1xwvA 129 2.33e+01 1pnsC 206 2.43e+01 i.1.1.1 88170 1bxlA 181 2.43e+01 1maz f.1.4.1 43396 1qorA 327 2.62e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1d2pA 373 2.65e+01 1d2oA b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1 22629,22630,22631,22632 2rslA 140 2.97e+01 2rslA c.53.1.1 33345 1ktjA 129 3.03e+01 b.1.18.7 72974 1cf7B 95 3.06e+01 1cf7B a.4.5.17 16152 1ywlA 96 3.09e+01 1fjgC 239 3.16e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1j5eC 239 3.21e+01 d.52.3.1,d.53.1.1 71544,71545 1mzgA 146 3.29e+01 d.224.1.1 79696 1q48A 134 3.38e+01 d.224.1.2 95783 1pu1A 94 3.48e+01 d.266.1.1 104307 1lab 80 3.56e+01 1ghj b.84.1.1 28226 1zhvA 134 3.62e+01 2bby 69 3.88e+01 2bby a.4.5.15 16148 1pqxA 91 4.03e+01 d.267.1.1 104296 1bc9 200 4.05e+01 1pbv a.118.3.1 19180 2axpA 173 4.25e+01 1qdlB 195 4.27e+01 1qdlB c.23.16.1 31437 1ywmA 200 4.45e+01 1d4bA 122 4.50e+01 1d4bA d.15.2.1 37638 1agnA 373 4.54e+01 2ohxA b.35.1.2,c.2.1.1 24737,29753 1bby 69 4.79e+01 2bby a.4.5.15 16149 1vlqA 337 4.80e+01 c.69.1.25 108848 1q9uA 130 4.85e+01 d.129.7.1 96314 2tysB 397 4.90e+01 2tysB c.79.1.1 35272 1bksB 397 5.27e+01 2tysB c.79.1.1 35285 1a50B 396 5.28e+01 2tysB c.79.1.1 35280 1j0fA 100 5.59e+01 c.47.1.14 90739 1qopB 396 5.60e+01 2tysB c.79.1.1 35270 1uheA 97 5.63e+01 1k8yB 396 5.77e+01 c.79.1.1 72184 2wsyB 396 5.79e+01 2tysB c.79.1.1 35288 1ppjE 196 5.80e+01 b.33.1.1,f.23.12.1 104260,104261 1bgyE 196 5.96e+01 1bgyE f.23.12.1 43683 1u35C 120 6.41e+01 1q38A 89 6.43e+01 b.1.2.1 95663 1wfeA 86 6.45e+01 1y96B 85 6.64e+01 1kal 29 6.64e+01 g.3.3.1 44077 1bc4 111 6.74e+01 1onc d.5.1.1 37279 1snlA 103 6.94e+01 a.39.1.7 105820 1p5vA 235 6.99e+01 b.1.11.1,b.7.2.1 87812,87813 1al0F 426 7.19e+01 2bpa1 b.121.5.1 23274 1njhA 119 7.24e+01 b.128.1.1 85787 1oiaA 95 7.25e+01 d.58.7.1 87051 1hqz1 141 7.35e+01 2gw6A 123 7.35e+01 1cx0A 95 7.37e+01 1urnA d.58.7.1 39158 2flsA 132 7.54e+01 1g10A 102 7.55e+01 1g10A d.137.1.1 60191 1nu4A 97 7.60e+01 d.58.7.1 80731 1hqz9 141 7.73e+01 2ifeA 100 7.75e+01 1tig d.68.1.1 39567 1urnA 97 7.83e+01 1urnA d.58.7.1 39153 1pxeA 63 7.88e+01 g.73.1.1 95286 1q87A 221 7.88e+01 e.47.1.1 96192 1o7dE 126 7.98e+01 2cu3A 64 8.13e+01 1esfA 233 8.18e+01 3seb b.40.2.2,d.15.6.1 25146,37735 1gkzA 388 8.18e+01 a.29.5.1,d.122.1.4 65268,65269 1u6bA 98 8.22e+01 d.58.7.1 107703 1m5oC 100 8.25e+01 d.58.7.1 78654 2bpa1 426 8.30e+01 2bpa1 1x4tA 92 8.35e+01 1gkxA 388 8.52e+01 a.29.5.1,d.122.1.4 65266,65267 1t1vA 93 8.61e+01 c.47.1.14 106278 2a5hA 416 8.74e+01 1tvjA 166 8.87e+01 2bv9A 290 8.98e+01