# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y96B 85 4.48e-01 1fr3A 67 7.53e-01 1fr3A b.40.6.1 25436 2d1uA 104 9.47e-01 1wmhB 86 1.27e+00 1gutA 68 1.42e+00 b.40.6.1 65576 1h2cA 140 2.66e+00 b.31.1.1 83462 1qvcA 145 3.38e+00 3ullA b.40.4.3 25284 2bw2A 140 3.45e+00 1yg6A 193 3.73e+00 2a2pA 129 4.20e+00 1lqtA 456 4.82e+00 c.3.1.1,c.4.1.1 74198,74199 1fhgA 154 4.85e+00 1tlk b.1.1.4 21706 2f4mA 295 5.27e+00 1ddf 127 6.42e+00 1ddf a.77.1.2 18423 1ma3A 253 6.52e+00 c.31.1.5 78883 1hqz1 141 8.00e+00 1xkrA 206 8.78e+00 1yaxA 153 8.84e+00 1q59A 172 8.94e+00 f.1.4.1 95881 1uheA 97 9.16e+00 2g0uA 92 9.59e+00 2d9rA 104 1.06e+01 1rfeA 162 1.09e+01 1wmhA 89 1.11e+01 1d4tA 104 1.13e+01 1d4tA d.93.1.1 40537 1oeyJ 107 1.13e+01 d.15.2.2 92804 1ft5A 211 1.14e+01 1bvb a.138.1.3 19681 2axwA 134 1.20e+01 1o9iA 266 1.25e+01 a.25.1.3 92671 1wrjA 156 1.26e+01 1t0hA 132 1.34e+01 b.34.2.1 106207 1xn5A 146 1.38e+01 1r6jA 82 1.39e+01 b.36.1.1 97151 1ny4A 82 1.39e+01 b.40.4.5 92316 1c5eA 95 1.41e+01 1c5eA b.85.2.1 28317 2bpa1 426 1.42e+01 2bpa1 1vhxA 150 1.45e+01 c.55.3.8 100712 1yc5A 246 1.49e+01 1repC 251 1.52e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2cunA 410 1.56e+01 2dfkA 402 1.57e+01 1i8fA 81 1.57e+01 1i8fA b.38.1.1 61959 1div 149 1.57e+01 1div d.99.1.1,d.100.1.1 40692,40693 1toaA 313 1.66e+01 1toaA c.92.2.2 35598 1mkaA 171 1.76e+01 1mkaA d.38.1.2 38543 2d00A 109 1.81e+01 1q87A 221 1.87e+01 e.47.1.1 96192 1tt8A 164 1.90e+01 1jeyB 565 1.90e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1g6gA 127 1.90e+01 1g6gA b.26.1.2 23916 1x7oA 287 1.93e+01 1m93A 55 1.95e+01 e.1.1.1 91235 1jeyA 609 2.01e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1qwlA 505 2.04e+01 e.5.1.1 96483 2c1lA 358 2.04e+01 2gaiA 633 2.05e+01 1kveB 77 2.09e+01 1kveB 1s4nA 348 2.17e+01 c.68.1.16 98501 2aioA 269 2.17e+01 1f7sA 139 2.24e+01 1cof d.109.1.2 40857 1v30A 124 2.28e+01 2aw42 46 2.32e+01 1xyiA 66 2.33e+01 1zkdA 387 2.33e+01 2fvtA 135 2.36e+01 1eg2A 319 2.45e+01 1eg2A c.66.1.11 34249 1xsqA 168 2.49e+01 1wgvA 124 2.52e+01 1whbA 157 2.52e+01 1ep0A 185 2.57e+01 1dzrA b.82.1.1 28080 1ztcA 221 2.59e+01 1bia 321 2.64e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1vr4A 103 2.71e+01 1ne5A 42 2.73e+01 g.3.7.2 85588 1go3E 187 2.77e+01 b.40.4.5,d.230.1.1 83054,83055 1vp2A 208 2.78e+01 2fj6A 82 2.81e+01 1tr0A 108 2.87e+01 d.58.4.4 107261 1mbyA 88 2.89e+01 d.223.1.1 78931 1xtoA 311 2.91e+01 1m07A 111 2.97e+01 d.5.1.1 78328 2gmqA 118 2.99e+01 1xewY 172 3.06e+01 1di2A 69 3.07e+01 1di2A d.50.1.1 38780 1gpmA 525 3.12e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2fblA 153 3.14e+01 1ylqA 96 3.14e+01 2etxA 209 3.16e+01 1wh0A 134 3.23e+01 1x31D 99 3.23e+01 1quqB 121 3.28e+01 1quqB b.40.4.3 25305 2bkfA 87 3.30e+01 2fclA 169 3.31e+01 1yv4A 104 3.31e+01 1eziA 228 3.32e+01 1eyrA c.68.1.13 34512 1yphC 131 3.47e+01 1vbvA 105 3.54e+01 1upiA 225 3.57e+01 b.82.1.1 99757 1id0A 152 3.58e+01 d.122.1.3 66111 1fu9A 36 3.58e+01 1fu9A g.37.1.2 45074 1gy6A 127 3.58e+01 d.17.4.2 70736 1r1qA 100 3.65e+01 d.93.1.1 104763 1wyxA 69 3.69e+01 2ewcA 126 3.70e+01 1zruA 264 3.73e+01 1zlhB 75 3.74e+01 1z52A 470 3.77e+01 1yqfA 203 3.79e+01 1dwkA 156 3.80e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1rwiA 270 3.80e+01 b.68.9.1 97987 1np6A 174 3.82e+01 c.37.1.10 85954 1dyqA 234 3.82e+01 3seb b.40.2.2,d.15.6.1 59140,59141 1utyA 187 3.83e+01 b.147.1.1 108036 1kn7A 78 3.84e+01 j.12.1.1 84413 2cu3A 64 3.86e+01 1nrlA 316 3.94e+01 a.123.1.1 92091 2a6aA 218 3.99e+01 1g8lA 411 4.00e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1bby 69 4.05e+01 2bby a.4.5.15 16149 1nwwA 149 4.06e+01 d.17.4.8 86306 1omzA 293 4.12e+01 c.68.1.15 87093 1xedA 117 4.17e+01 1q7eA 428 4.18e+01 c.123.1.1 96035 1mwwA 128 4.23e+01 d.80.1.4 91483 1uc7A 125 4.26e+01 c.47.1.1 99163 1d1gA 168 4.35e+01 1d1gA c.71.1.1 34889 1zpvA 91 4.48e+01 2a7uA 22 4.51e+01 1wojA 214 4.51e+01 1e25A 282 4.53e+01 1e25A e.3.1.1 42731 1cqtI 44 4.58e+01 1x74A 360 4.76e+01 1wouA 123 4.76e+01 c.47.1.16 109471 1jogA 146 4.79e+01 a.24.16.2 77142 1wstA 417 4.81e+01 1pp0A 199 4.85e+01 d.103.1.1 104211 1h9mA 145 4.86e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1jhfA 202 5.05e+01 a.4.5.2,b.87.1.1 63057,63058 1r29A 127 5.05e+01 d.42.1.1 96856 1no5A 114 5.07e+01 d.218.1.5 92014 1to2I 64 5.08e+01 2frnA 278 5.15e+01 1m2xA 223 5.29e+01 d.157.1.1 84764 1lq9A 112 5.32e+01 d.58.4.3 78129 2aj6A 159 5.33e+01 1hcnA 92 5.39e+01 1hcnA g.17.1.4 44809 2c7hA 86 5.42e+01 1i3zA 103 5.45e+01 d.93.1.1 83667 1w2iA 91 5.48e+01 d.58.10.1 109127 1gk9B 557 5.49e+01 1ff4A 65 5.49e+01 g.7.1.1 83251 1w5fA 353 5.56e+01 1gyxA 76 5.61e+01 d.80.1.1 76387 1oe1A 336 5.62e+01 b.6.1.3,b.6.1.3 86891,86892 1zo2A 129 5.64e+01 1wkwB 20 5.64e+01 2c0zA 216 5.70e+01 1bn8A 420 5.70e+01 1pcl b.80.1.1 28022 2gh1A 301 5.72e+01 1wr8A 231 5.77e+01 1kl9A 182 5.78e+01 b.40.4.5 72681 2g3aA 152 5.79e+01 1q7lB 88 5.81e+01 1t62A 166 5.81e+01 b.122.1.4 106541 1s12A 94 5.85e+01 2g6fX 59 5.85e+01 1d2sA 170 5.88e+01 1d2sA b.29.1.4 24221 1ri5A 298 5.93e+01 c.66.1.34 97502 1nbuA 119 5.93e+01 d.96.1.3 91767 1vggA 161 5.95e+01 1nu0A 138 5.96e+01 c.55.3.8 92165 1nu4A 97 6.00e+01 d.58.7.1 80731 1nt2A 210 6.05e+01 c.66.1.3 86149 1ik9C 37 6.06e+01 1pbjA 125 6.13e+01 d.37.1.1,d.37.1.1 94414,94415 1h54A 754 6.27e+01 a.102.1.4,b.30.5.3 60634,60635 1yfbA 59 6.28e+01 1zud1 251 6.29e+01 2axpA 173 6.29e+01 1kjwA 295 6.35e+01 b.34.2.1,c.37.1.1 68643,68644 1cf7B 95 6.40e+01 1cf7B a.4.5.17 16152 2fz4A 237 6.42e+01 1aho 64 6.42e+01 1aho g.3.7.1 44127 2gfgA 193 6.45e+01 1td4A 115 6.47e+01 1vfsA 386 6.47e+01 b.49.2.2,c.1.6.1 108584,108585 1ip9A 85 6.47e+01 1ip9A d.15.2.2 62638 1bypA 99 6.56e+01 1plc b.6.1.1 22858 1fmeA 28 6.59e+01 k.12.1.1 59878 1m5q1 130 6.62e+01 1oj4A 283 6.63e+01 d.14.1.5,d.58.26.5 93083,93084 1np7A 489 6.67e+01 a.99.1.1,c.28.1.1 80677,80678 1rm6A 769 6.71e+01 1uz3A 102 6.75e+01 1qwnA 1045 6.78e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1q68A 38 6.81e+01 j.48.1.1 95962 1qjcA 158 6.84e+01 1b6tA c.26.1.3 63328 2b7eA 59 6.92e+01 1vddA 228 6.93e+01 e.49.1.1 108519 1zc1A 208 6.93e+01 1ztsA 139 6.94e+01 1qhlA 227 6.97e+01 1qhlA c.37.1.12 32382 2f1rA 171 7.00e+01 1tig 94 7.04e+01 1tig d.68.1.1 39566 2a5hA 416 7.11e+01 1sn4A 64 7.13e+01 1aho g.3.7.1 44136 1o13A 136 7.16e+01 c.55.5.1 80762 2cq2A 114 7.22e+01 1w2xA 758 7.23e+01 c.14.1.4,c.14.1.4 109134,109135 1fvgA 199 7.26e+01 1fvaA d.58.28.1 39408 1yukB 120 7.28e+01 1segA 64 7.31e+01 g.3.7.1 105453 1gwmA 153 7.35e+01 b.18.1.19 83348 1nqzA 194 7.42e+01 d.113.1.1 86077 1y5oA 115 7.46e+01 1kgdA 180 7.52e+01 c.37.1.1 68582 1zc3B 113 7.52e+01 1hdoA 206 7.56e+01 1he2A c.2.1.2 60965 1v54G 85 7.62e+01 f.23.2.1 100328 1ej0A 180 7.64e+01 1ej0A c.66.1.2 34179 1cr5A 189 7.84e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1kv0A 66 7.86e+01 g.3.7.1 91040 1jh3A 107 7.89e+01 d.66.1.4 71661 1rmwA 212 7.92e+01 1rp4A 389 8.04e+01 a.227.1.1 105027 1u1sA 82 8.08e+01 1wywA 230 8.08e+01 2b82A 211 8.09e+01 2faoA 309 8.11e+01 1gxjA 186 8.12e+01 d.215.1.1 70707 3caoA 103 8.13e+01 3caoA a.138.1.1 19661 2hrvA 142 8.14e+01 2hrvA b.47.1.4 26429 1j8bA 112 8.15e+01 d.222.1.1 77101 1svy 114 8.17e+01 1svy d.109.1.1 40831 1sqsA 242 8.18e+01 c.23.5.5 98968 1m4jA 142 8.44e+01 d.109.1.2 78602 1ten 90 8.47e+01 1ten b.1.2.1 21990 1zud2 66 8.49e+01 1w9gA 104 8.49e+01 1ybxA 143 8.50e+01 1zhvA 134 8.53e+01 1njhA 119 8.65e+01 b.128.1.1 85787 1c9oA 66 8.67e+01 1mjc b.40.4.5 25325 1tif 78 8.68e+01 1tif d.15.8.1 37836 1vkuA 100 8.71e+01 a.28.1.1 108690 1y14B 171 8.75e+01 1hw7A 255 8.76e+01 1i7fA d.193.1.1 61297 1rwzA 245 8.78e+01 d.131.1.2,d.131.1.2 98005,98006 1sz2A 332 8.82e+01 2cvlA 124 8.86e+01