# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rwiA 270 3.95e-01 b.68.9.1 97987 1dyqA 234 7.81e-01 3seb b.40.2.2,d.15.6.1 59140,59141 2fvtA 135 1.10e+00 1iz5A 249 1.31e+00 d.131.1.2,d.131.1.2 83834,83835 1my6A 199 2.07e+00 a.2.11.1,d.44.1.1 85232,85233 1thg 544 2.29e+00 1thg c.69.1.17 34763 1vfsA 386 2.49e+00 b.49.2.2,c.1.6.1 108584,108585 1xwvA 129 3.06e+00 1xedA 117 3.77e+00 1mixA 206 4.41e+00 a.11.2.1,b.55.1.5 79166,79167 2d1uA 104 5.10e+00 1wspA 84 5.68e+00 1ydmA 187 5.90e+00 1fl2A 310 6.75e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 2a2pA 129 6.81e+00 1rwzA 245 6.84e+00 d.131.1.2,d.131.1.2 98005,98006 1d2oA 187 6.95e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1ockA 412 7.55e+00 c.117.1.1 86802 1c7nA 399 7.64e+00 1d2fA c.67.1.3 34413 2axwA 134 7.82e+00 2cxcA 144 8.70e+00 2fclA 169 9.15e+00 2rslA 140 9.69e+00 2rslA c.53.1.1 33345 1m93A 55 1.07e+01 e.1.1.1 91235 1qavA 90 1.17e+01 1qauA b.36.1.1 24777 1hqz1 141 1.19e+01 1qhlA 227 1.20e+01 1qhlA c.37.1.12 32382 2axpA 173 1.22e+01 1pp0A 199 1.23e+01 d.103.1.1 104211 2f4mA 295 1.23e+01 1q59A 172 1.26e+01 f.1.4.1 95881 1tq5A 242 1.28e+01 1lqtA 456 1.31e+01 c.3.1.1,c.4.1.1 74198,74199 1oa2A 218 1.36e+01 b.29.1.11 86721 1id0A 152 1.41e+01 d.122.1.3 66111 1fecA 490 1.46e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2awpA 198 1.46e+01 1a53 247 1.54e+01 1a53 c.1.2.4 28564 1ej0A 180 1.61e+01 1ej0A c.66.1.2 34179 1ri6A 343 1.63e+01 b.69.11.1 97503 1eceA 358 1.71e+01 1eceA c.1.8.3 28813 1g8lA 411 1.76e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1yizA 429 1.79e+01 1flcA 432 1.85e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1xf1A 926 1.87e+01 1p3cA 215 1.92e+01 b.47.1.1 93996 1yiyA 429 1.96e+01 1ddf 127 1.97e+01 1ddf a.77.1.2 18423 2bg5A 324 2.02e+01 1ma3A 253 2.03e+01 c.31.1.5 78883 1m07A 111 2.16e+01 d.5.1.1 78328 1sqsA 242 2.18e+01 c.23.5.5 98968 1iscA 192 2.20e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1tf1A 198 2.22e+01 d.110.2.2 106826 2gw6A 123 2.22e+01 1fhgA 154 2.24e+01 1tlk b.1.1.4 21706 1o58A 303 2.27e+01 c.79.1.1 92491 1t64A 377 2.28e+01 c.42.1.2 106543 1xewY 172 2.28e+01 1xn5A 146 2.50e+01 1sr4B 261 2.51e+01 d.151.1.1 105949 1vetB 125 2.59e+01 d.110.7.1 108554 1njhA 119 2.64e+01 b.128.1.1 85787 1e9rA 437 2.68e+01 c.37.1.11 64827 1b25A 619 2.78e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2g9iA 249 2.85e+01 2fj6A 82 2.86e+01 1nijA 318 2.96e+01 c.37.1.10,d.237.1.1 85741,85742 1h2cA 140 3.09e+01 b.31.1.1 83462 1pyfA 312 3.20e+01 c.1.7.1 95334 2f86B 143 3.25e+01 2awfA 172 3.29e+01 1ri5A 298 3.33e+01 c.66.1.34 97502 1ur1A 378 3.35e+01 c.1.8.3 99804 1cby 259 3.57e+01 1cby d.103.1.1 40705 3seb 238 3.58e+01 3seb b.40.2.2,d.15.6.1 25184,37773 2bbkL 125 3.59e+01 2bbkL g.21.1.1 44882 2b7eA 59 3.71e+01 1z9tA 255 3.75e+01 2fwkA 121 3.77e+01 1epwA 1290 3.78e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1sek 378 3.90e+01 1sek e.1.1.1 42675 1exg 110 4.01e+01 1exg b.2.2.1 22387 1c7sA 858 4.07e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1qopB 396 4.09e+01 2tysB c.79.1.1 35270 1dzlA 505 4.16e+01 1dzlA b.121.6.1 23586 2cygA 312 4.31e+01 1m98A 317 4.49e+01 a.175.1.1,d.17.4.6 78866,78867 1twfI 122 4.60e+01 1n91A 108 4.65e+01 d.206.1.1 80326 2aefA 234 4.70e+01 1k0hA 117 4.79e+01 b.106.1.2 71975 1fg7A 356 4.79e+01 1gewA c.67.1.1 59819 1a99A 344 4.86e+01 1pot c.94.1.1 35812 1v30A 124 4.93e+01 1bia 321 4.99e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1xkiA 162 5.00e+01 1xnaA 183 5.02e+01 1xnaA b.18.1.8 23773 1tljA 213 5.02e+01 d.282.1.1 107126 1wmhB 86 5.05e+01 1vr0A 247 5.13e+01 1xuqA 212 5.50e+01 1repC 251 5.62e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1ix9A 205 5.66e+01 a.2.11.1,d.44.1.1 76899,76900 1wb4A 297 5.77e+01 1tt8A 164 5.80e+01 1c7qA 445 5.84e+01 2pgi c.80.1.2 35307 1rp4A 389 5.91e+01 a.227.1.1 105027 1l6xA 207 5.92e+01 b.1.1.2,b.1.1.2 73642,73643 1xttA 216 5.98e+01 1t9bA 677 6.06e+01 1yaxA 153 6.13e+01 1g6gA 127 6.16e+01 1g6gA b.26.1.2 23916 1xyiA 66 6.21e+01 1r6xA 395 6.23e+01 b.122.1.3,c.26.1.5 97167,97168 1bo4A 168 6.33e+01 1bo4A d.108.1.1 40798 2g6tA 306 6.38e+01 1v0lA 313 6.46e+01 c.1.8.3 108207 1ahsA 126 6.47e+01 1ahsA b.19.1.1 23794 2gmqA 118 6.52e+01 1vr4A 103 6.70e+01 1wmhA 89 6.75e+01 1vetA 124 6.90e+01 d.110.7.1 108553 1r75A 141 6.94e+01 b.134.1.1 97189 1p5vA 235 7.07e+01 b.1.11.1,b.7.2.1 87812,87813 2g0uA 92 7.07e+01 1ne9A 335 7.11e+01 d.108.1.4,d.108.1.4 91839,91840 1ta8A 332 7.51e+01 1vddA 228 7.54e+01 e.49.1.1 108519 1yv4A 104 7.62e+01 2gi3A 476 7.64e+01 1zthA 258 7.68e+01 2axtO 247 7.71e+01 1zhvA 134 7.74e+01 1qvcA 145 7.79e+01 3ullA b.40.4.3 25284 2arcA 164 7.83e+01 2arcA b.82.4.1 28148 2d9rA 104 7.84e+01 1gqzA 274 7.86e+01 d.21.1.1,d.21.1.1 83311,83312 1uxzA 131 7.94e+01 b.18.1.10 100170 1hdoA 206 7.97e+01 1he2A c.2.1.2 60965 1xcbA 211 8.07e+01 a.4.5.38,c.2.1.12 109552,109553 1mdc 133 8.09e+01 1hmt b.60.1.2 27198 1fr3A 67 8.15e+01 1fr3A b.40.6.1 25436 1vbvA 105 8.18e+01 1vphA 149 8.24e+01 1l9xA 315 8.25e+01 c.23.16.1 73762 1g0sA 209 8.50e+01 1g0sA d.113.1.1 60187 1ft5A 211 8.55e+01 1bvb a.138.1.3 19681 1hkhA 279 8.70e+01 c.69.1.12 90628 1n8kA 374 8.77e+01 b.35.1.2,c.2.1.1 80298,80299 1regX 122 8.79e+01 1regX d.58.27.1 39406 1vjpA 394 8.90e+01 c.2.1.3,d.81.1.3 100828,100829 1mo9A 523 8.96e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343