# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 3.98e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1a53 247 5.62e-01 1a53 c.1.2.4 28564 2fvtA 135 1.80e+00 1ma3A 253 1.95e+00 c.31.1.5 78883 2rslA 140 2.09e+00 2rslA c.53.1.1 33345 1iz5A 249 2.28e+00 d.131.1.2,d.131.1.2 83834,83835 1my6A 199 3.09e+00 a.2.11.1,d.44.1.1 85232,85233 1eceA 358 3.47e+00 1eceA c.1.8.3 28813 1m93A 55 3.61e+00 e.1.1.1 91235 1rwiA 270 4.99e+00 b.68.9.1 97987 1qhlA 227 5.20e+00 1qhlA c.37.1.12 32382 1ockA 412 5.23e+00 c.117.1.1 86802 2d1uA 104 5.54e+00 2fclA 169 6.55e+00 1q59A 172 6.81e+00 f.1.4.1 95881 1fl2A 310 6.99e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 1v30A 124 7.07e+00 1sqsA 242 7.39e+00 c.23.5.5 98968 1rwzA 245 7.81e+00 d.131.1.2,d.131.1.2 98005,98006 1xwvA 129 8.41e+00 1mixA 206 8.97e+00 a.11.2.1,b.55.1.5 79166,79167 1v0lA 313 9.13e+00 c.1.8.3 108207 2axwA 134 9.67e+00 2awpA 198 1.07e+01 1thg 544 1.08e+01 1thg c.69.1.17 34763 2a2pA 129 1.10e+01 2cxcA 144 1.11e+01 1c7nA 399 1.14e+01 1d2fA c.67.1.3 34413 1k38A 254 1.19e+01 e.3.1.1 84303 1wspA 84 1.25e+01 1sr4B 261 1.33e+01 d.151.1.1 105949 1h2cA 140 1.34e+01 b.31.1.1 83462 2gw6A 123 1.49e+01 1tf1A 198 1.51e+01 d.110.2.2 106826 1repC 251 1.55e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1bby 69 1.61e+01 2bby a.4.5.15 16149 1o58A 303 1.61e+01 c.79.1.1 92491 1ri5A 298 1.72e+01 c.66.1.34 97502 1tr9A 341 1.74e+01 1yiyA 429 1.93e+01 1ur1A 378 1.94e+01 c.1.8.3 99804 1d2oA 187 1.95e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1g8lA 411 1.97e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1fhgA 154 2.00e+01 1tlk b.1.1.4 21706 1t64A 377 2.03e+01 c.42.1.2 106543 1vqoI 162 2.13e+01 1vfsA 386 2.15e+01 b.49.2.2,c.1.6.1 108584,108585 1xedA 117 2.16e+01 1id0A 152 2.22e+01 d.122.1.3 66111 2aioA 269 2.35e+01 2g9iA 249 2.46e+01 1m07A 111 2.49e+01 d.5.1.1 78328 1xttA 216 2.49e+01 1flcA 432 2.50e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1h72C 296 2.53e+01 d.14.1.5,d.58.26.1 60712,60713 1ddf 127 2.55e+01 1ddf a.77.1.2 18423 1exg 110 2.71e+01 1exg b.2.2.1 22387 1tiqA 180 2.73e+01 d.108.1.1 107010 1ydmA 187 2.79e+01 1qlmA 316 2.88e+01 1qlmA d.147.1.1 41765 1ej0A 180 2.92e+01 1ej0A c.66.1.2 34179 1t9bA 677 2.93e+01 1xfcA 384 2.96e+01 1a99A 344 3.00e+01 1pot c.94.1.1 35812 1cby 259 3.04e+01 1cby d.103.1.1 40705 1iscA 192 3.05e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1ri6A 343 3.10e+01 b.69.11.1 97503 1fecA 490 3.12e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1z0wA 207 3.15e+01 1nijA 318 3.22e+01 c.37.1.10,d.237.1.1 85741,85742 1qi9A 556 3.25e+01 1qhbA a.111.1.2 19053 2bg5A 324 3.28e+01 2f4mA 295 3.29e+01 2g6tA 306 3.30e+01 1xsqA 168 3.49e+01 1yizA 429 3.56e+01 1xewY 172 3.61e+01 1ex0A 731 3.61e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1xkiA 162 3.65e+01 1pbjA 125 3.75e+01 d.37.1.1,d.37.1.1 94414,94415 1tq5A 242 3.76e+01 1pp0A 199 3.86e+01 d.103.1.1 104211 2g0uA 92 3.91e+01 2bbkL 125 3.97e+01 2bbkL g.21.1.1 44882 1c52 131 4.03e+01 1c52 a.3.1.1 15810 1njhA 119 4.09e+01 b.128.1.1 85787 2arcA 164 4.19e+01 2arcA b.82.4.1 28148 1wmhA 89 4.20e+01 2b7eA 59 4.25e+01 2fj6A 82 4.35e+01 2czrA 226 4.48e+01 1vddA 228 4.50e+01 e.49.1.1 108519 1oa2A 218 4.52e+01 b.29.1.11 86721 1of8A 370 4.66e+01 c.1.10.4 92819 1bia 321 4.67e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1nq6A 302 4.67e+01 c.1.8.3 92046 1vkuA 100 4.72e+01 a.28.1.1 108690 2gfgA 193 4.75e+01 2cygA 312 4.87e+01 1sek 378 4.97e+01 1sek e.1.1.1 42675 1l9xA 315 4.97e+01 c.23.16.1 73762 2fh7A 595 4.97e+01 1qg8A 255 4.99e+01 1qg8A c.68.1.1 34505 1m7vA 363 5.18e+01 d.174.1.1 78748 1x8dA 104 5.20e+01 1n8kA 374 5.57e+01 b.35.1.2,c.2.1.1 80298,80299 1k0hA 117 5.58e+01 b.106.1.2 71975 1g6gA 127 5.59e+01 1g6gA b.26.1.2 23916 2flsA 132 5.77e+01 1wdnA 226 5.79e+01 1lst c.94.1.1 35816 1epwA 1290 5.80e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1n91A 108 5.91e+01 d.206.1.1 80326 1ztsA 139 6.04e+01 1c7sA 858 6.07e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1u6tA 121 6.09e+01 1b25A 619 6.22e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1zhvA 134 6.30e+01 1regX 122 6.35e+01 1regX d.58.27.1 39406 2axpA 173 6.40e+01 1qavA 90 6.41e+01 1qauA b.36.1.1 24777 1ljoA 77 6.55e+01 b.38.1.1 73941 1kqpA 271 6.58e+01 c.26.2.1 72883 4uagA 437 6.58e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1zp4A 304 6.66e+01 1vc4A 254 6.69e+01 c.1.2.4 100557 1e9rA 437 6.89e+01 c.37.1.11 64827 1o1zA 234 6.89e+01 c.1.18.3 86555 5nul 138 6.95e+01 5nul c.23.5.1 31191 1wb4A 297 7.00e+01 1rsy 152 7.07e+01 1rsy b.7.1.2 23192 2gi3A 476 7.08e+01 1jhfA 202 7.22e+01 a.4.5.2,b.87.1.1 63057,63058 2afbA 351 7.40e+01 1xcbA 211 7.48e+01 a.4.5.38,c.2.1.12 109552,109553 1c7qA 445 7.48e+01 2pgi c.80.1.2 35307 1vbvA 105 7.52e+01 1tt8A 164 7.55e+01 1xubA 298 7.55e+01 1vr4A 103 7.68e+01 1dzlA 505 7.73e+01 1dzlA b.121.6.1 23586 1u3wA 374 7.77e+01 2gh1A 301 7.77e+01 1mo9A 523 7.85e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1y96B 85 8.03e+01 1vqzA 341 8.16e+01 2b3wA 168 8.21e+01 1bdfA 235 8.50e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 2culA 232 8.57e+01 1p5vA 235 8.58e+01 b.1.11.1,b.7.2.1 87812,87813 1ebfA 358 8.65e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 7a3hA 303 8.75e+01 7a3hA c.1.8.3 28817 1fh9A 312 8.82e+01 1taxA c.1.8.3 28913 3seb 238 9.00e+01 3seb b.40.2.2,d.15.6.1 25184,37773