# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 8.82e-02 3seb b.40.2.2,d.15.6.1 59140,59141 1a53 247 2.81e-01 1a53 c.1.2.4 28564 1my6A 199 4.04e-01 a.2.11.1,d.44.1.1 85232,85233 1ockA 412 7.18e-01 c.117.1.1 86802 1iz5A 249 9.49e-01 d.131.1.2,d.131.1.2 83834,83835 2fvtA 135 1.30e+00 1m93A 55 1.42e+00 e.1.1.1 91235 1rwiA 270 1.51e+00 b.68.9.1 97987 2bg5A 324 2.10e+00 1eceA 358 2.17e+00 1eceA c.1.8.3 28813 1thg 544 2.57e+00 1thg c.69.1.17 34763 2fclA 169 2.70e+00 1qhlA 227 3.00e+00 1qhlA c.37.1.12 32382 1o58A 303 3.32e+00 c.79.1.1 92491 2rslA 140 3.56e+00 2rslA c.53.1.1 33345 2cxcA 144 3.90e+00 1rwzA 245 3.94e+00 d.131.1.2,d.131.1.2 98005,98006 1repC 251 4.27e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1ur1A 378 5.39e+00 c.1.8.3 99804 1tf1A 198 5.56e+00 d.110.2.2 106826 1vr4A 103 5.79e+00 1vfsA 386 6.49e+00 b.49.2.2,c.1.6.1 108584,108585 1iscA 192 7.10e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 2aioA 269 7.14e+00 1wspA 84 7.25e+00 2d1uA 104 7.49e+00 1t9bA 677 7.75e+00 1sqsA 242 7.76e+00 c.23.5.5 98968 1t64A 377 7.83e+00 c.42.1.2 106543 1v0lA 313 7.87e+00 c.1.8.3 108207 1q59A 172 8.47e+00 f.1.4.1 95881 1ma3A 253 8.51e+00 c.31.1.5 78883 1xewY 172 8.55e+00 2a2pA 129 8.59e+00 1id0A 152 8.69e+00 d.122.1.3 66111 2awpA 198 8.92e+00 1ri5A 298 8.98e+00 c.66.1.34 97502 1h2cA 140 9.02e+00 b.31.1.1 83462 1jhfA 202 9.54e+00 a.4.5.2,b.87.1.1 63057,63058 1g8lA 411 9.55e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1ri6A 343 9.61e+00 b.69.11.1 97503 1c52 131 9.99e+00 1c52 a.3.1.1 15810 2g9iA 249 1.16e+01 1flcA 432 1.21e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1y96B 85 1.24e+01 1xwvA 129 1.30e+01 1p5vA 235 1.33e+01 b.1.11.1,b.7.2.1 87812,87813 1of8A 370 1.35e+01 c.1.10.4 92819 1m07A 111 1.35e+01 d.5.1.1 78328 2gw6A 123 1.37e+01 1qi9A 556 1.38e+01 1qhbA a.111.1.2 19053 2f4mA 295 1.39e+01 1xuqA 212 1.39e+01 1vddA 228 1.40e+01 e.49.1.1 108519 2axwA 134 1.44e+01 1hdoA 206 1.48e+01 1he2A c.2.1.2 60965 1gyxA 76 1.53e+01 d.80.1.1 76387 1exg 110 1.59e+01 1exg b.2.2.1 22387 1pyfA 312 1.60e+01 c.1.7.1 95334 1ix9A 205 1.66e+01 a.2.11.1,d.44.1.1 76899,76900 1cby 259 1.67e+01 1cby d.103.1.1 40705 1xedA 117 1.68e+01 1k38A 254 1.73e+01 e.3.1.1 84303 1xttA 216 1.75e+01 2gfgA 193 1.78e+01 1sr4B 261 1.81e+01 d.151.1.1 105949 1vr0A 247 1.82e+01 1tt8A 164 1.88e+01 1tiqA 180 1.92e+01 d.108.1.1 107010 2bbkL 125 1.96e+01 2bbkL g.21.1.1 44882 1hqz1 141 2.05e+01 1kqpA 271 2.08e+01 c.26.2.1 72883 1qlmA 316 2.15e+01 1qlmA d.147.1.1 41765 2g6tA 306 2.21e+01 1regX 122 2.23e+01 1regX d.58.27.1 39406 2axpA 173 2.26e+01 1sek 378 2.29e+01 1sek e.1.1.1 42675 1qavA 90 2.33e+01 1qauA b.36.1.1 24777 2arcA 164 2.36e+01 2arcA b.82.4.1 28148 2aefA 234 2.37e+01 1xfcA 384 2.41e+01 2afbA 351 2.44e+01 1reqB 637 2.45e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1vetA 124 2.46e+01 d.110.7.1 108553 1o1zA 234 2.48e+01 c.1.18.3 86555 2etxA 209 2.49e+01 1l9xA 315 2.49e+01 c.23.16.1 73762 1n8kA 374 2.52e+01 b.35.1.2,c.2.1.1 80298,80299 1ydyA 356 2.60e+01 1ddf 127 2.69e+01 1ddf a.77.1.2 18423 1ej0A 180 2.69e+01 1ej0A c.66.1.2 34179 1jlyA 304 2.74e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1tljA 213 2.78e+01 d.282.1.1 107126 8rucI 123 2.88e+01 1rboC d.73.1.1 39629 1c7qA 445 2.92e+01 2pgi c.80.1.2 35307 1e9rA 437 3.07e+01 c.37.1.11 64827 1wb4A 297 3.15e+01 1x8dA 104 3.27e+01 1pbjA 125 3.28e+01 d.37.1.1,d.37.1.1 94414,94415 1g0sA 209 3.34e+01 1g0sA d.113.1.1 60187 1h72C 296 3.35e+01 d.14.1.5,d.58.26.1 60712,60713 1whbA 157 3.36e+01 1juvA 193 3.36e+01 c.71.1.1 90912 1bby 69 3.36e+01 2bby a.4.5.15 16149 1vjpA 394 3.46e+01 c.2.1.3,d.81.1.3 100828,100829 2fj6A 82 3.46e+01 1ta3B 303 3.47e+01 c.1.8.3 106732 1s0pA 176 3.49e+01 a.192.1.1 98300 1o57A 291 3.49e+01 a.4.5.40,c.61.1.1 92483,92484 1bia 321 3.56e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2cygA 312 3.58e+01 1pp0A 199 3.59e+01 d.103.1.1 104211 2amhA 207 3.71e+01 2b7eA 59 3.86e+01 1v30A 124 3.88e+01 1nq6A 302 3.88e+01 c.1.8.3 92046 1mwwA 128 4.00e+01 d.80.1.4 91483 1a99A 344 4.10e+01 1pot c.94.1.1 35812 1xsqA 168 4.15e+01 1xn5A 146 4.15e+01 1t0bA 252 4.24e+01 c.23.16.6 106199 1i6lA 328 4.28e+01 c.26.1.1 66041 1r5lA 262 4.30e+01 a.5.3.1,c.13.1.1 97099,97100 1f9vA 347 4.31e+01 1bg2 c.37.1.9 59745 1b25A 619 4.37e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1h7zA 194 4.48e+01 1qhvA b.21.1.1 60733 1fhgA 154 4.48e+01 1tlk b.1.1.4 21706 1y96A 86 4.57e+01 1u6tA 121 4.70e+01 1qopB 396 4.76e+01 2tysB c.79.1.1 35270 1ta8A 332 4.76e+01 1vqzA 341 4.78e+01 1zruA 264 4.85e+01 1vcvA 226 4.89e+01 2g0uA 92 4.90e+01 1xkiA 162 4.94e+01 1bdfA 235 5.02e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1xreA 217 5.02e+01 1ex0A 731 5.05e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1yiyA 429 5.09e+01 1i8fA 81 5.10e+01 1i8fA b.38.1.1 61959 1fh9A 312 5.11e+01 1taxA c.1.8.3 28913 1njhA 119 5.13e+01 b.128.1.1 85787 2flsA 132 5.13e+01 1cfr 285 5.17e+01 1cfr c.52.1.7 33312 1vp2A 208 5.21e+01 1yaxA 153 5.36e+01 1oa2A 218 5.38e+01 b.29.1.11 86721 1d2oA 187 5.38e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 2cxaA 256 5.45e+01 2g50A 530 5.46e+01 1nf3C 128 5.48e+01 b.36.1.1 85596 1o6dA 163 5.51e+01 c.116.1.3 92567 2fh7A 595 5.51e+01 2gi3A 476 5.53e+01 1rv9A 259 5.55e+01 d.194.1.2 105105 1wmhB 86 5.60e+01 1h09A 338 5.63e+01 b.109.1.1,c.1.8.8 83420,83421 1zthA 258 5.64e+01 1uc7A 125 5.65e+01 c.47.1.1 99163 1zhvA 134 5.66e+01 1dljA 402 5.69e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1a8q 274 5.80e+01 1brt c.69.1.12 34702 1g6gA 127 5.82e+01 1g6gA b.26.1.2 23916 2gvkA 317 5.85e+01 1o98A 511 5.86e+01 c.105.1.1,c.76.1.3 86684,86685 1wouA 123 5.88e+01 c.47.1.16 109471 1dkuA 317 5.89e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1xdpA 687 5.90e+01 1mo9A 523 6.00e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1mixA 206 6.02e+01 a.11.2.1,b.55.1.5 79166,79167 1g7nA 131 6.04e+01 b.60.1.2 83274 1zp4A 304 6.06e+01 1u3wA 374 6.09e+01 1fl2A 310 6.13e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1fzqA 181 6.19e+01 1hurA c.37.1.8 32060 1ep0A 185 6.22e+01 1dzrA b.82.1.1 28080 2bo4A 397 6.25e+01 1vhqA 232 6.29e+01 c.23.16.2 100696 1dmuA 299 6.34e+01 1dmuA c.52.1.4 33294 2hvm 273 6.40e+01 1cnv c.1.8.5 28985 1tuoA 464 6.47e+01 1fg7A 356 6.48e+01 1gewA c.67.1.1 59819 1dzlA 505 6.51e+01 1dzlA b.121.6.1 23586 2ab5A 269 6.54e+01 1woqA 267 6.57e+01 c.55.1.10,c.55.1.10 109462,109463 1w9zA 283 6.63e+01 1enwA 114 6.76e+01 1enwA a.5.4.1 16291 1lk2A 274 6.78e+01 b.1.1.2,d.19.1.1 91056,91057 1xklA 273 6.82e+01 1fr3A 67 6.86e+01 1fr3A b.40.6.1 25436 1wlyA 333 6.87e+01 2d9rA 104 6.99e+01 2culA 232 7.06e+01 1s29A 92 7.08e+01 a.4.5.46 98373 1jhsA 188 7.10e+01 d.107.1.1 84172 1h4vB 421 7.12e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1sn4A 64 7.17e+01 1aho g.3.7.1 44136 1bn8A 420 7.24e+01 1pcl b.80.1.1 28022 2d1pA 140 7.31e+01 1te7A 103 7.34e+01 1wpuA 147 7.35e+01 1wmqA 147 7.38e+01 1bg6 359 7.46e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1tq5A 242 7.47e+01 1jfbA 404 7.48e+01 a.104.1.1 66624 1e4mM 501 7.48e+01 1e70M c.1.8.4 59226 1rsy 152 7.51e+01 1rsy b.7.1.2 23192 1wojA 214 7.54e+01 1uekA 275 7.62e+01 d.14.1.5,d.58.26.5 88483,88484 2aqjA 538 7.76e+01 2aq4A 434 7.76e+01 1u9cA 224 7.79e+01 1vc4A 254 7.86e+01 c.1.2.4 100557 2dfkA 402 7.89e+01 1c7sA 858 8.09e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1yv4A 104 8.21e+01 2akaB 299 8.22e+01 1e0tA 470 8.25e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1xkrA 206 8.27e+01 1toaA 313 8.29e+01 1toaA c.92.2.2 35598 1c7nA 399 8.30e+01 1d2fA c.67.1.3 34413 1vr7A 142 8.33e+01 1y9aA 360 8.33e+01 1qqp1 213 8.38e+01 1qqp1 1z9tA 255 8.49e+01 1zxxA 319 8.50e+01 1wu3I 161 8.53e+01 1ydmA 187 8.62e+01 1ne9A 335 8.66e+01 d.108.1.4,d.108.1.4 91839,91840 1uxzA 131 8.68e+01 b.18.1.10 100170 1vbuA 328 8.75e+01 2bepA 159 8.76e+01 1oc7A 364 8.78e+01 c.6.1.1 86794 1vkuA 100 8.83e+01 a.28.1.1 108690 1ve6A 582 8.84e+01 1ztsA 139 8.99e+01