# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y96B 85 1.27e-01 1wmhB 86 1.11e+00 1fr3A 67 2.33e+00 1fr3A b.40.6.1 25436 1u24A 337 2.41e+00 2cunA 410 2.62e+00 1xewY 172 3.20e+00 2etxA 209 4.09e+00 1repC 251 4.23e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1xn5A 146 4.64e+00 1hqz1 141 5.23e+00 1vp2A 208 5.31e+00 1d4tA 104 6.69e+00 1d4tA d.93.1.1 40537 1gutA 68 6.81e+00 b.40.6.1 65576 1nu4A 97 6.85e+00 d.58.7.1 80731 1oeyJ 107 6.89e+00 d.15.2.2 92804 2d9rA 104 6.93e+00 8rucI 123 6.97e+00 1rboC d.73.1.1 39629 2frnA 278 7.14e+00 1fhgA 154 7.55e+00 1tlk b.1.1.4 21706 1s12A 94 8.00e+00 2gmqA 118 8.33e+00 1h2cA 140 9.03e+00 b.31.1.1 83462 1dyqA 234 9.36e+00 3seb b.40.2.2,d.15.6.1 59140,59141 1vhxA 150 9.45e+00 c.55.3.8 100712 1xtoA 311 9.56e+00 1w2iA 91 1.03e+01 d.58.10.1 109127 1nrlA 316 1.04e+01 a.123.1.1 92091 2c1lA 358 1.05e+01 1qwlA 505 1.10e+01 e.5.1.1 96483 1kjwA 295 1.14e+01 b.34.2.1,c.37.1.1 68643,68644 1vr7A 142 1.15e+01 1t0hA 132 1.18e+01 b.34.2.1 106207 2bkfA 87 1.20e+01 1gk9B 557 1.23e+01 1div 149 1.25e+01 1div d.99.1.1,d.100.1.1 40692,40693 1rfeA 162 1.25e+01 1wkqA 164 1.33e+01 c.97.1.2 109393 2fclA 169 1.40e+01 1aho 64 1.40e+01 1aho g.3.7.1 44127 1yukB 120 1.41e+01 1x74A 360 1.46e+01 1zpvA 91 1.53e+01 1ylqA 96 1.55e+01 1f7sA 139 1.56e+01 1cof d.109.1.2 40857 1qopB 396 1.61e+01 2tysB c.79.1.1 35270 1yg6A 193 1.61e+01 1s4nA 348 1.62e+01 c.68.1.16 98501 2fhzB 108 1.65e+01 1tt8A 164 1.76e+01 1wyxA 69 1.78e+01 1r6jA 82 1.80e+01 b.36.1.1 97151 1luzA 88 1.86e+01 b.40.4.5 74271 1c9oA 66 1.91e+01 1mjc b.40.4.5 25325 2dfkA 402 1.92e+01 1ip9A 85 2.02e+01 1ip9A d.15.2.2 62638 2d00A 109 2.03e+01 1vbvA 105 2.03e+01 2bpa1 426 2.05e+01 2bpa1 1toaA 313 2.06e+01 1toaA c.92.2.2 35598 2g6fX 59 2.07e+01 2g64A 140 2.15e+01 1vr4A 103 2.16e+01 2ewcA 126 2.18e+01 1quqB 121 2.20e+01 1quqB b.40.4.3 25305 1m5q1 130 2.21e+01 2gw6A 123 2.22e+01 1di2A 69 2.27e+01 1di2A d.50.1.1 38780 1ft5A 211 2.27e+01 1bvb a.138.1.3 19681 1oj4A 283 2.32e+01 d.14.1.5,d.58.26.5 93083,93084 1wmhA 89 2.35e+01 1vkuA 100 2.46e+01 a.28.1.1 108690 1wrjA 156 2.48e+01 2aj6A 159 2.48e+01 1segA 64 2.51e+01 g.3.7.1 105453 1x8dA 104 2.52e+01 1ma3A 253 2.54e+01 c.31.1.5 78883 1pz1A 333 2.55e+01 c.1.7.1 95390 1z52A 470 2.56e+01 1omzA 293 2.63e+01 c.68.1.15 87093 1pbjA 125 2.71e+01 d.37.1.1,d.37.1.1 94414,94415 1whbA 157 2.80e+01 1smxA 96 2.83e+01 b.40.4.5 105772 1wh0A 134 2.86e+01 2a4dA 160 2.89e+01 1tr0A 108 2.92e+01 d.58.4.4 107261 1yv4A 104 2.94e+01 2a6aA 218 3.01e+01 1zc1A 208 3.05e+01 1kzlA 208 3.06e+01 b.43.4.3,b.43.4.3 77635,77636 1sqsA 242 3.09e+01 c.23.5.5 98968 1wspA 84 3.12e+01 1r1qA 100 3.23e+01 d.93.1.1 104763 1i8fA 81 3.24e+01 1i8fA b.38.1.1 61959 1wojA 214 3.24e+01 2cu6A 103 3.25e+01 2fueA 262 3.25e+01 2g3aA 152 3.26e+01 1h54A 754 3.33e+01 a.102.1.4,b.30.5.3 60634,60635 1ny4A 82 3.36e+01 b.40.4.5 92316 1d1gA 168 3.38e+01 1d1gA c.71.1.1 34889 1uheA 97 3.42e+01 1lq9A 112 3.45e+01 d.58.4.3 78129 1xsqA 168 3.46e+01 1m07A 111 3.48e+01 d.5.1.1 78328 1eziA 228 3.49e+01 1eyrA c.68.1.13 34512 1nwaA 203 3.57e+01 d.58.28.1 86295 1d2sA 170 3.57e+01 1d2sA b.29.1.4 24221 1kv0A 66 3.58e+01 g.3.7.1 91040 1id0A 152 3.61e+01 d.122.1.3 66111 1mo9A 523 3.70e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1no5A 114 3.72e+01 d.218.1.5 92014 1c52 131 3.81e+01 1c52 a.3.1.1 15810 2c7hA 86 3.86e+01 1bia 321 3.86e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1nt2A 210 3.87e+01 c.66.1.3 86149 2fiuA 99 3.88e+01 2aw42 46 3.88e+01 1go3E 187 3.89e+01 b.40.4.5,d.230.1.1 83054,83055 1lqtA 456 3.89e+01 c.3.1.1,c.4.1.1 74198,74199 1f06A 320 3.92e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1sn4A 64 3.93e+01 1aho g.3.7.1 44136 1zud1 251 3.98e+01 2g6tA 306 4.01e+01 1m93A 55 4.08e+01 e.1.1.1 91235 1y14B 171 4.14e+01 1kgdA 180 4.20e+01 c.37.1.1 68582 1zvpA 133 4.25e+01 2gi9A 56 4.27e+01 1hfoA 113 4.29e+01 d.80.1.3 61006 1nwwA 149 4.44e+01 d.17.4.8 86306 1ztcA 221 4.45e+01 1omrA 201 4.46e+01 a.39.1.5 93349 1upiA 225 4.47e+01 b.82.1.1 99757 1l3iA 192 4.53e+01 c.66.1.22 77676 1qysA 106 4.57e+01 k.41.1.1 96603 1cf7B 95 4.60e+01 1cf7B a.4.5.17 16152 1vrtA 560 4.63e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1mwwA 128 4.66e+01 d.80.1.4 91483 1tig 94 4.67e+01 1tig d.68.1.1 39566 1fvgA 199 4.70e+01 1fvaA d.58.28.1 39408 1e25A 282 4.81e+01 1e25A e.3.1.1 42731 1w2lA 99 4.85e+01 1qb2A 109 4.88e+01 1qb2A a.36.1.1 17125 1dwkA 156 4.92e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 2gfgA 193 4.92e+01 1uylA 236 5.00e+01 d.122.1.1 108147 2f06A 144 5.03e+01 1gy6A 127 5.11e+01 d.17.4.2 70736 1pp0A 199 5.11e+01 d.103.1.1 104211 2gaiA 633 5.11e+01 2f9dA 125 5.16e+01 1kl9A 182 5.23e+01 b.40.4.5 72681 1ifqA 138 5.26e+01 1ifqA d.110.4.1 62350 1k0fA 277 5.34e+01 c.92.2.2 71974 1njhA 119 5.38e+01 b.128.1.1 85787 1wr8A 231 5.48e+01 1yfbA 59 5.49e+01 1juvA 193 5.61e+01 c.71.1.1 90912 1k0hA 117 5.63e+01 b.106.1.2 71975 1jh3A 107 5.63e+01 d.66.1.4 71661 1ten 90 5.66e+01 1ten b.1.2.1 21990 1yqfA 203 5.69e+01 1j8bA 112 5.72e+01 d.222.1.1 77101 2gh1A 301 5.79e+01 1pvdA 537 5.82e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1djtA 64 5.82e+01 1aho g.3.7.1 44132 1dptA 117 5.83e+01 1dptA d.80.1.3 39862 1rmwA 212 5.84e+01 1kw4A 89 5.85e+01 a.60.1.2 73077 1wnyA 186 5.97e+01 1gouA 116 5.99e+01 d.1.1.2 65429 2bh4X 134 6.00e+01 1rp4A 389 6.00e+01 a.227.1.1 105027 1eejA 216 6.01e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1vyiA 112 6.20e+01 1ne5A 42 6.24e+01 g.3.7.2 85588 1f2tB 148 6.26e+01 1f2tB 1qdeA 224 6.26e+01 1qvaA c.37.1.19 32410 2eulA 156 6.27e+01 1b12A 248 6.28e+01 1b12A b.87.1.2 28388 1bn8A 420 6.28e+01 1pcl b.80.1.1 28022 1jogA 146 6.31e+01 a.24.16.2 77142 2b82A 211 6.43e+01 1eg2A 319 6.46e+01 1eg2A c.66.1.11 34249 1q68A 38 6.50e+01 j.48.1.1 95962 1u46A 291 6.51e+01 d.144.1.7 107656 2hrvA 142 6.55e+01 2hrvA b.47.1.4 26429 2bw2A 140 6.57e+01 1s14A 194 6.63e+01 d.122.1.2 98329 1vmeA 410 6.68e+01 c.23.5.1,d.157.1.3 108893,108894 1xn7A 78 6.73e+01 1e4mM 501 6.73e+01 1e70M c.1.8.4 59226 2c6yA 111 6.78e+01 1zlhB 75 6.78e+01 1qhdA 398 6.80e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1xwvA 129 6.83e+01 1xkrA 206 6.86e+01 1whi 122 6.87e+01 1whi b.39.1.1 24810 1oa8A 133 6.87e+01 b.145.1.1 92698 1v8cA 168 6.89e+01 d.15.3.1,d.129.5.1 100495,100496 1fgyA 127 6.89e+01 1faoA b.55.1.1 26976 1gyxA 76 6.93e+01 d.80.1.1 76387 1si2A 149 7.07e+01 b.34.14.1 105569 1gpmA 525 7.08e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1ep0A 185 7.09e+01 1dzrA b.82.1.1 28080 2dpmA 284 7.17e+01 2dpmA c.66.1.28 34246 1qfjA 232 7.20e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 2fg9A 178 7.29e+01 2culA 232 7.33e+01 1sg5A 86 7.40e+01 1ohpA 125 7.41e+01 1owfA 99 7.50e+01 a.55.1.1 87487 2a5hA 416 7.52e+01 1qjcA 158 7.52e+01 1b6tA c.26.1.3 63328 1w5fA 353 7.58e+01 2a90A 240 7.60e+01 1d2oA 187 7.61e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 2aexA 346 7.65e+01 1z02A 446 7.68e+01 2a6hC 1119 7.85e+01 1c5eA 95 7.87e+01 1c5eA b.85.2.1 28317 1bby 69 7.90e+01 2bby a.4.5.15 16149 1nbuA 119 7.91e+01 d.96.1.3 91767 1oe8A 211 7.92e+01 a.45.1.1,c.47.1.5 86905,86906 1dqiA 124 7.98e+01 1do6A b.1.13.1 22357 1wwiA 148 8.14e+01 2bzgA 232 8.18e+01 1r9dA 787 8.19e+01 c.7.1.1 104865 1kveB 77 8.22e+01 1kveB 1cc8A 73 8.29e+01 1cc8A d.58.17.1 39343 1m6pA 152 8.36e+01 1m6pA b.64.1.1 27519 2cxcA 144 8.36e+01 1wu3I 161 8.43e+01 1w96A 554 8.44e+01 1mml 265 8.50e+01 1mml e.8.1.2 43015 1ri5A 298 8.54e+01 c.66.1.34 97502 1vkiA 181 8.54e+01 d.116.1.1 108664 1ekeA 230 8.59e+01 1ekeA c.55.3.1 33572 2c0zA 216 8.62e+01 1r1mA 164 8.64e+01 d.79.7.1 96820 1zo2A 129 8.64e+01 1w70A 60 8.65e+01 1vggA 161 8.67e+01 1d2nA 272 8.70e+01 1d2nA c.37.1.20 32428 1gxjA 186 8.80e+01 d.215.1.1 70707 1r29A 127 8.94e+01 d.42.1.1 96856 1snzA 344 8.95e+01 b.30.5.4 98930