# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 2.49e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1xn5A 146 9.36e-01 1iz5A 249 2.42e+00 d.131.1.2,d.131.1.2 83834,83835 1c7nA 399 3.07e+00 1d2fA c.67.1.3 34413 1d2oA 187 3.24e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1wspA 84 3.50e+00 2rslA 140 3.82e+00 2rslA c.53.1.1 33345 1qhlA 227 4.60e+00 1qhlA c.37.1.12 32382 1ydmA 187 4.66e+00 1mixA 206 4.98e+00 a.11.2.1,b.55.1.5 79166,79167 1m93A 55 6.76e+00 e.1.1.1 91235 1yiyA 429 7.14e+00 1rwzA 245 7.37e+00 d.131.1.2,d.131.1.2 98005,98006 1yizA 429 7.99e+00 2fclA 169 8.19e+00 1hqz1 141 8.35e+00 2afbA 351 8.41e+00 1xwvA 129 8.52e+00 1e9rA 437 8.79e+00 c.37.1.11 64827 1xf1A 926 9.51e+00 2cxcA 144 9.52e+00 1qavA 90 9.65e+00 1qauA b.36.1.1 24777 1oa2A 218 1.06e+01 b.29.1.11 86721 1fhgA 154 1.40e+01 1tlk b.1.1.4 21706 1pp0A 199 1.46e+01 d.103.1.1 104211 3seb 238 1.49e+01 3seb b.40.2.2,d.15.6.1 25184,37773 2gw6A 123 1.69e+01 1sqsA 242 1.69e+01 c.23.5.5 98968 1ma3A 253 1.69e+01 c.31.1.5 78883 1njhA 119 1.76e+01 b.128.1.1 85787 2b7eA 59 1.88e+01 1sr4B 261 1.97e+01 d.151.1.1 105949 1ri5A 298 2.09e+01 c.66.1.34 97502 2bg5A 324 2.18e+01 1o58A 303 2.19e+01 c.79.1.1 92491 1p3cA 215 2.25e+01 b.47.1.1 93996 1b25A 619 2.26e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1xewY 172 2.27e+01 1ej0A 180 2.30e+01 1ej0A c.66.1.2 34179 1wmhB 86 2.36e+01 1ur1A 378 2.42e+01 c.1.8.3 99804 1vr7A 142 2.50e+01 1exg 110 2.54e+01 1exg b.2.2.1 22387 2aefA 234 2.72e+01 2f86B 143 2.91e+01 1lqtA 456 3.02e+01 c.3.1.1,c.4.1.1 74198,74199 1epwA 1290 3.07e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1qi9A 556 3.15e+01 1qhbA a.111.1.2 19053 1pyfA 312 3.17e+01 c.1.7.1 95334 1zpvA 91 3.29e+01 1ft5A 211 3.33e+01 1bvb a.138.1.3 19681 1fl2A 310 3.35e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1rp4A 389 3.43e+01 a.227.1.1 105027 1m07A 111 3.47e+01 d.5.1.1 78328 1repC 251 3.52e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1c7qA 445 3.57e+01 2pgi c.80.1.2 35307 1cby 259 3.59e+01 1cby d.103.1.1 40705 1n8kA 374 3.64e+01 b.35.1.2,c.2.1.1 80298,80299 1vbvA 105 3.67e+01 1u3wA 374 3.78e+01 1ockA 412 3.80e+01 c.117.1.1 86802 2g9iA 249 3.93e+01 1bia 321 4.10e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1tf1A 198 4.11e+01 d.110.2.2 106826 1sek 378 4.20e+01 1sek e.1.1.1 42675 1quqB 121 4.22e+01 1quqB b.40.4.3 25305 2amhA 207 4.23e+01 1flcA 432 4.45e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1ahsA 126 4.52e+01 1ahsA b.19.1.1 23794 2fh7A 595 4.57e+01 1vckA 115 4.61e+01 1l6xA 207 4.63e+01 b.1.1.2,b.1.1.2 73642,73643 1nijA 318 4.72e+01 c.37.1.10,d.237.1.1 85741,85742 1ex0A 731 4.72e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1v0lA 313 4.87e+01 c.1.8.3 108207 1g0sA 209 4.97e+01 1g0sA d.113.1.1 60187 1fr3A 67 5.05e+01 1fr3A b.40.6.1 25436 1w2iA 91 5.15e+01 d.58.10.1 109127 1uxzA 131 5.17e+01 b.18.1.10 100170 1xyiA 66 5.20e+01 1vr4A 103 5.27e+01 2cygA 312 5.36e+01 1tt8A 164 5.41e+01 1r75A 141 5.42e+01 b.134.1.1 97189 1r6xA 395 5.44e+01 b.122.1.3,c.26.1.5 97167,97168 1w7lA 422 5.45e+01 c.67.1.1 109226 1r77A 103 5.49e+01 2g6tA 306 5.55e+01 1fg7A 356 5.67e+01 1gewA c.67.1.1 59819 2ab5A 269 5.71e+01 1bo4A 168 5.72e+01 1bo4A d.108.1.1 40798 1ri6A 343 5.77e+01 b.69.11.1 97503 2axtO 247 5.87e+01 1g6gA 127 5.94e+01 1g6gA b.26.1.2 23916 2dfkA 402 6.02e+01 1vjpA 394 6.27e+01 c.2.1.3,d.81.1.3 100828,100829 1vqoL 165 6.30e+01 1x8dA 104 6.34e+01 1regX 122 6.38e+01 1regX d.58.27.1 39406 2gmqA 118 6.44e+01 1qlmA 316 6.47e+01 1qlmA d.147.1.1 41765 1e4mM 501 6.51e+01 1e70M c.1.8.4 59226 1mdc 133 6.57e+01 1hmt b.60.1.2 27198 1tiqA 180 6.58e+01 d.108.1.1 107010 1h7zA 194 6.65e+01 1qhvA b.21.1.1 60733 1a99A 344 6.71e+01 1pot c.94.1.1 35812 1e0tA 470 6.79e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1hdoA 206 7.01e+01 1he2A c.2.1.2 60965 1f2tB 148 7.08e+01 1f2tB 1zp4A 304 7.10e+01 1xttA 216 7.20e+01 1o1zA 234 7.25e+01 c.1.18.3 86555 1vphA 149 7.38e+01 1mo9A 523 7.40e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1xkiA 162 7.44e+01 1gd1O 334 7.55e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1h72C 296 7.58e+01 d.14.1.5,d.58.26.1 60712,60713 1of8A 370 7.67e+01 c.1.10.4 92819 1l9xA 315 7.68e+01 c.23.16.1 73762 1tljA 213 7.92e+01 d.282.1.1 107126 2d9rA 104 8.03e+01 1eceA 358 8.07e+01 1eceA c.1.8.3 28813 1o6dA 163 8.07e+01 c.116.1.3 92567 1kqpA 271 8.20e+01 c.26.2.1 72883 1zthA 258 8.23e+01 1c7sA 858 8.31e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1a8q 274 8.59e+01 1brt c.69.1.12 34702 1qvcA 145 8.70e+01 3ullA b.40.4.3 25284 1o57A 291 8.71e+01 a.4.5.40,c.61.1.1 92483,92484 1vqzA 341 8.73e+01 1pgs 314 8.74e+01 1pgs b.121.1.1,b.121.1.1 23653,23654 1a53 247 8.81e+01 1a53 c.1.2.4 28564 2g5dA 422 8.92e+01 1wmhA 89 8.96e+01