# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wspA 84 1.01e+00 1svpA 161 1.04e+00 1svpA b.47.1.3 26384 1d2oA 187 1.29e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1cf7B 95 1.80e+00 1cf7B a.4.5.17 16152 2etxA 209 1.89e+00 1hrkA 359 2.63e+00 1hrkA c.92.1.1 61228 1ma3A 253 4.16e+00 c.31.1.5 78883 1z6oA 212 4.51e+00 1repC 251 5.65e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1xwvA 129 7.21e+00 1pu1A 94 8.96e+00 d.266.1.1 104307 1o7dE 126 9.96e+00 1vkuA 100 1.02e+01 a.28.1.1 108690 1y96B 85 1.22e+01 1ppjE 196 1.24e+01 b.33.1.1,f.23.12.1 104260,104261 1w2yA 229 1.38e+01 a.204.1.1 109140 1gyxA 76 1.43e+01 d.80.1.1 76387 1z57A 339 1.44e+01 1x4tA 92 1.98e+01 1zvdA 380 2.03e+01 2ez6A 221 2.13e+01 1bby 69 2.17e+01 2bby a.4.5.15 16149 1yukA 103 2.19e+01 1nu4A 97 2.28e+01 d.58.7.1 80731 1q9uA 130 2.43e+01 d.129.7.1 96314 1k0hA 117 2.55e+01 b.106.1.2 71975 1qopB 396 2.76e+01 2tysB c.79.1.1 35270 2rslA 140 2.80e+01 2rslA c.53.1.1 33345 1f06A 320 2.90e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1wfeA 86 3.08e+01 1wy6A 172 3.16e+01 1hqz1 141 3.28e+01 1knzA 164 3.37e+01 e.34.1.1 68709 1uheA 97 3.42e+01 1p5vA 235 3.51e+01 b.1.11.1,b.7.2.1 87812,87813 2flsA 132 3.51e+01 2bpa1 426 3.95e+01 2bpa1 2b7eA 59 4.01e+01 1vfrA 218 4.02e+01 1vfrA d.90.1.1 40247 1vq3A 94 4.10e+01 1s6lA 212 4.13e+01 2d3jA 157 4.20e+01 1dj7B 75 4.27e+01 1dj7B b.34.4.3 24598 1fhgA 154 4.29e+01 1tlk b.1.1.4 21706 1in0A 163 4.36e+01 d.58.49.1,d.58.49.1 83694,83695 2gw6A 123 4.36e+01 1vp2A 208 4.44e+01 2bh4X 134 4.48e+01 1ucrA 78 4.51e+01 a.4.5.45 99188 2g3aA 152 4.64e+01 1utiA 58 4.70e+01 b.34.2.1 99962 2bwbA 46 4.81e+01 1n13B 113 4.85e+01 1rr7A 129 4.90e+01 a.4.1.14 105075 1zdzA 302 4.98e+01 2a6vA 226 5.21e+01 1eg2A 319 5.36e+01 1eg2A c.66.1.11 34249 1njhA 119 5.44e+01 b.128.1.1 85787 1xn5A 146 5.47e+01 1jk4A 89 5.47e+01 b.9.1.1 77130 2c7hA 86 5.60e+01 1m07A 111 5.74e+01 d.5.1.1 78328 1yg6A 193 6.03e+01 2etdA 171 6.28e+01 1wmhA 89 6.54e+01 1keaA 221 6.56e+01 a.96.1.2 68491 2fdrA 229 6.57e+01 1f3uA 118 6.90e+01 1f3uA b.65.1.1 27521 1f3uB 171 6.95e+01 1f3uB b.65.1.1 27525 1cdq 77 6.99e+01 1cds g.7.1.3 44459 2gmqA 118 7.00e+01 1r64A 481 7.10e+01 b.18.1.20,c.41.1.1 97140,97141 1s0yB 71 7.26e+01 d.80.1.1 98315 1zx5A 300 7.30e+01 1zc3B 113 7.37e+01 1z94A 147 7.54e+01 1kyqA 274 7.60e+01 c.2.1.11,e.37.1.1 73281,73282 1qvcA 145 7.77e+01 3ullA b.40.4.3 25284 1sheA 103 7.77e+01 d.274.1.1 105551 1wwhA 119 7.78e+01 1z06A 189 7.79e+01 1qj4A 257 7.91e+01 1qj4A c.69.1.20 34796 1gsoA 431 7.95e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1dyqA 234 7.98e+01 3seb b.40.2.2,d.15.6.1 59140,59141 1ukkA 142 7.99e+01 d.227.1.1 99491 1d4tA 104 8.02e+01 1d4tA d.93.1.1 40537 1ft5A 211 8.19e+01 1bvb a.138.1.3 19681 1dbhA 354 8.40e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1i8fA 81 8.48e+01 1i8fA b.38.1.1 61959 1dro 122 8.51e+01 1btn b.55.1.1 26954 1yb3A 175 8.69e+01 1m7gA 211 8.82e+01 c.37.1.4 78724 1nwaA 203 8.89e+01 d.58.28.1 86295