# List of top-scoring protein chains for T0309.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zynA 202 2.66e+00 1d2oA 187 2.87e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1xwvA 129 3.94e+00 1d2pA 373 4.16e+00 1d2oA b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1 22629,22630,22631,22632 1kxd 159 4.60e+00 1svpA b.47.1.3 26392 2snv 151 5.27e+00 1svpA b.47.1.3 26394 1wykA 153 5.33e+00 1svpA b.47.1.3 26386 1kxc 159 5.36e+00 1svpA b.47.1.3 26391 2snwA 158 5.41e+00 1svpA b.47.1.3 26381 1kxa 159 5.43e+00 1svpA b.47.1.3 26383 1wspA 84 5.57e+00 1ghtA 105 6.00e+00 2rslA c.53.1.1 60526 1kxb 159 6.01e+00 1svpA b.47.1.3 26390 1svpA 161 6.06e+00 1svpA b.47.1.3 26384 1hyuA 521 6.16e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1kxe 159 6.41e+00 1svpA b.47.1.3 26393 1kxf 264 6.78e+00 1svpA b.47.1.3 26380 1ld4A 264 6.80e+00 i.6.1.1 77886 2rslA 140 7.12e+00 2rslA c.53.1.1 33345 1d1sA 373 8.78e+00 2ohxA b.35.1.2,c.2.1.1 24727,29743 1d1tA 373 8.79e+00 2ohxA b.35.1.2,c.2.1.1 24719,29735 1gdtA 183 8.85e+00 2rslA a.4.1.2,c.53.1.1 16021,33348 1repC 251 8.96e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1zr4A 183 9.04e+00 1dyqA 234 1.10e+01 3seb b.40.2.2,d.15.6.1 59140,59141 1sbqA 189 1.22e+01 c.124.1.6 105412 2fclA 169 1.23e+01 2ewrA 170 1.24e+01 1kqpA 271 1.53e+01 c.26.2.1 72883 1ktjA 129 1.63e+01 b.1.18.7 72974 1a9v 129 1.63e+01 1a9v b.1.18.7 21946 1lo5D 233 1.63e+01 b.40.2.2,d.15.6.1 78120,78121 1esfA 233 1.64e+01 3seb b.40.2.2,d.15.6.1 25146,37735 1i4gA 233 1.65e+01 3seb b.40.2.2,d.15.6.1 25148,37737 1cf7B 95 1.92e+01 1cf7B a.4.5.17 16152 1pms 136 1.98e+01 1awe b.55.1.1 26966 1ge8A 249 2.24e+01 1plq d.131.1.2,d.131.1.2 41398,41399 1iz5A 249 2.25e+01 d.131.1.2,d.131.1.2 83834,83835 1iz4A 249 2.28e+01 d.131.1.2,d.131.1.2 83832,83833 2d3jA 157 2.87e+01 1snlA 103 2.89e+01 a.39.1.7 105820 1m93A 55 2.91e+01 e.1.1.1 91235 2apsA 162 2.92e+01 1yaiA b.1.8.1 22298 2fo1E 373 3.43e+01 1hrkA 359 3.82e+01 1hrkA c.92.1.1 61228 2flsA 132 3.88e+01 2a3vA 320 3.98e+01 2bwbA 46 4.03e+01 2cq9A 130 4.07e+01 2b7eA 59 4.09e+01 1ep5A 157 4.19e+01 b.47.1.3 83186 2bweA 50 4.27e+01 1kevA 351 4.43e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1dkuA 317 4.47e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1xhfA 123 4.49e+01 1ma3A 253 4.56e+01 c.31.1.5 78883 1pvdA 555 4.67e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1pydA 556 4.69e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 5gcnA 166 4.78e+01 1yghA d.108.1.1 40807 1vq3A 94 4.82e+01 1qpbA 563 4.85e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1c7gA 456 5.00e+01 c.67.1.2 90415 1awe 130 5.04e+01 1awe b.55.1.1 26968 1sqsA 242 5.41e+01 c.23.5.5 98968 1vqoI 162 5.42e+01 1tplA 456 5.53e+01 1ax4A c.67.1.2 34387 1wvoA 79 5.62e+01 1zctA 290 5.67e+01 1jj2K 164 5.74e+01 1ffkJ c.12.1.1 63096 1vqoL 165 5.76e+01 2gefA 217 5.77e+01 1rr7A 129 5.78e+01 a.4.1.14 105075 1z0hA 438 5.91e+01 1ydmA 187 6.12e+01 1qvaA 223 6.24e+01 1qvaA c.37.1.19 32411 1a3wA 500 6.36e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 1qxpA 900 6.53e+01 a.39.1.8,a.39.1.8,b.14.1.1,d.3.1.3 96543,96544,96545,96546 1z6oA 212 6.55e+01 2br9A 234 6.62e+01 1cbg 490 6.65e+01 1e70M c.1.8.4 28933 1wr1B 58 6.87e+01 1bby 69 7.02e+01 2bby a.4.5.15 16149 1wg2A 64 7.21e+01 1do0A 442 7.24e+01 1do0A c.37.1.20 32432 1g4aE 443 7.26e+01 1do0A c.37.1.20 32444 1e94E 449 7.36e+01 1do0A c.37.1.20 32442 1gh6A 114 7.42e+01 a.2.3.1 65191 2f08A 129 7.78e+01 2fnpA 124 8.25e+01 1rvfL 110 8.56e+01 8fabA b.1.1.1 19990