# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 3.48e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1xn5A 146 1.29e+00 1iz5A 249 3.30e+00 d.131.1.2,d.131.1.2 83834,83835 1hyuA 521 3.78e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1zynA 202 3.89e+00 1c7nA 399 4.18e+00 1d2fA c.67.1.3 34413 1d2oA 187 4.40e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1wspA 84 4.76e+00 2rslA 140 5.19e+00 2rslA c.53.1.1 33345 1qhlA 227 6.24e+00 1qhlA c.37.1.12 32382 1ydmA 187 6.31e+00 1mixA 206 6.74e+00 a.11.2.1,b.55.1.5 79166,79167 1m93A 55 9.12e+00 e.1.1.1 91235 1yiyA 429 9.64e+00 1rwzA 245 9.95e+00 d.131.1.2,d.131.1.2 98005,98006 1j5vA 351 1.04e+01 c.72.1.1 71585 1yizA 429 1.08e+01 2ewrA 170 1.10e+01 2fclA 169 1.10e+01 1hqz1 141 1.13e+01 2afbA 351 1.13e+01 1xwvA 129 1.15e+01 1e9rA 437 1.18e+01 c.37.1.11 64827 1xf1A 926 1.28e+01 2cxcA 144 1.28e+01 1qavA 90 1.30e+01 1qauA b.36.1.1 24777 1oa2A 218 1.43e+01 b.29.1.11 86721 1tlk 154 1.85e+01 1tlk b.1.1.4 21707 1h8vA 218 1.86e+01 2nlrA b.29.1.11 60795 1fhgA 154 1.88e+01 1tlk b.1.1.4 21706 1pp0A 199 1.96e+01 d.103.1.1 104211 3seb 238 2.00e+01 3seb b.40.2.2,d.15.6.1 25184,37773 2gw6A 123 2.27e+01 1sqsA 242 2.27e+01 c.23.5.5 98968 1ma3A 253 2.27e+01 c.31.1.5 78883 1tluA 130 2.28e+01 d.156.1.2 107139 1njhA 119 2.36e+01 b.128.1.1 85787 2pil 159 2.45e+01 2pil d.24.1.1 38376 2b7eA 59 2.52e+01 1sr4B 261 2.64e+01 d.151.1.1 105949 1u2xA 474 2.73e+01 c.72.1.3 107622 1ri5A 298 2.80e+01 c.66.1.34 97502 2bg5A 324 2.91e+01 1o58A 303 2.93e+01 c.79.1.1 92491 1a0rP 245 2.97e+01 1b9yC c.47.1.6 33054 1ygs 234 3.00e+01 1ygs b.26.1.1 23907 1p3cA 215 3.01e+01 b.47.1.1 93996 1b25A 619 3.02e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1xewY 172 3.03e+01 1p8kZ 254 3.04e+01 d.95.2.1,d.95.2.1 94361,94362 1ej0A 180 3.08e+01 1ej0A c.66.1.2 34179 1wmhB 86 3.15e+01 1ur1A 378 3.24e+01 c.1.8.3 99804 1vr7A 142 3.35e+01 1exg 110 3.39e+01 1exg b.2.2.1 22387 2aefA 234 3.63e+01 1ktjA 129 3.82e+01 b.1.18.7 72974 2f86B 143 3.88e+01 1pbgA 468 3.97e+01 1e70M c.1.8.4 28946 1pnsC 206 4.03e+01 i.1.1.1 88170 1lqtA 456 4.03e+01 c.3.1.1,c.4.1.1 74198,74199 1epwA 1290 4.10e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1qi9A 556 4.21e+01 1qhbA a.111.1.2 19053 1pyfA 312 4.23e+01 c.1.7.1 95334 1hetA 374 4.31e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1zpvA 91 4.40e+01 1ft5A 211 4.44e+01 1bvb a.138.1.3 19681 1fl2A 310 4.47e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1rp4A 389 4.58e+01 a.227.1.1 105027 1m07A 111 4.63e+01 d.5.1.1 78328 1repC 251 4.69e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1c7qA 445 4.76e+01 2pgi c.80.1.2 35307 1cby 259 4.79e+01 1cby d.103.1.1 40705 2adbA 148 4.85e+01 1n8kA 374 4.86e+01 b.35.1.2,c.2.1.1 80298,80299 2ohxA 374 4.88e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1vbvA 105 4.90e+01 1u3wA 374 5.04e+01 1ockA 412 5.07e+01 c.117.1.1 86802 2g9iA 249 5.24e+01 1bia 321 5.46e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1tf1A 198 5.48e+01 d.110.2.2 106826 1sek 378 5.60e+01 1sek e.1.1.1 42675 1quqB 121 5.63e+01 1quqB b.40.4.3 25305 2amhA 207 5.64e+01 2myr 501 5.93e+01 1flcA 432 5.93e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1ahsA 126 6.02e+01 1ahsA b.19.1.1 23794 1od8A 313 6.03e+01 c.1.8.3 86838 1fjgC 239 6.03e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1e0wA 313 6.08e+01 1taxA c.1.8.3 59150 2fh7A 595 6.09e+01 1fc1A 224 6.10e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 1vckA 115 6.14e+01 1l6xA 207 6.17e+01 b.1.1.2,b.1.1.2 73642,73643 1evuA 731 6.26e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1nijA 318 6.28e+01 c.37.1.10,d.237.1.1 85741,85742 1ex0A 731 6.29e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1v0lA 313 6.49e+01 c.1.8.3 108207 1g0sA 209 6.62e+01 1g0sA d.113.1.1 60187 1fr3A 67 6.73e+01 1fr3A b.40.6.1 25436 1w2iA 91 6.85e+01 d.58.10.1 109127 1uxzA 131 6.88e+01 b.18.1.10 100170 1xyiA 66 6.93e+01 1vr4A 103 7.01e+01 2cygA 312 7.13e+01 1fw9A 164 7.19e+01 1fw9A d.190.1.1 60059 1tt8A 164 7.19e+01 1r75A 141 7.21e+01 b.134.1.1 97189 1r6xA 395 7.24e+01 b.122.1.3,c.26.1.5 97167,97168 1w7lA 422 7.26e+01 c.67.1.1 109226 1r77A 103 7.31e+01 1aq0A 306 7.35e+01 1aq0A c.1.8.3 28842 2g6tA 306 7.38e+01 1fg7A 356 7.54e+01 1gewA c.67.1.1 59819 2ab5A 269 7.60e+01 1bo4A 168 7.61e+01 1bo4A d.108.1.1 40798 1ri6A 343 7.67e+01 b.69.11.1 97503 1b5tA 275 7.73e+01 1b5tA c.1.23.1 29676 2axtO 247 7.81e+01 1g6gA 127 7.91e+01 1g6gA b.26.1.2 23916 2dfkA 402 8.01e+01 1gewA 356 8.03e+01 1gewA c.67.1.1 60470 1ltlA 279 8.10e+01 b.40.4.11 84701 1vjpA 394 8.34e+01 c.2.1.3,d.81.1.3 100828,100829 1vqoL 165 8.38e+01 1s72L 165 8.38e+01 c.12.1.1 105331 1ryjA 70 8.40e+01 d.15.3.2 98104 1jj2K 164 8.43e+01 1ffkJ c.12.1.1 63096 1x8dA 104 8.43e+01 1regX 122 8.49e+01 1regX d.58.27.1 39406 2gmqA 118 8.56e+01 1qlmA 316 8.60e+01 1qlmA d.147.1.1 41765 1e4mM 501 8.66e+01 1e70M c.1.8.4 59226 1veaA 148 8.73e+01 d.275.1.1 108529 1mdc 133 8.73e+01 1hmt b.60.1.2 27198 1tiqA 180 8.74e+01 d.108.1.1 107010 1h7zA 194 8.84e+01 1qhvA b.21.1.1 60733 1xhfA 123 8.90e+01 1a99A 344 8.91e+01 1pot c.94.1.1 35812