# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 2.44e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1zynA 202 1.43e+00 2rslA 140 1.95e+00 2rslA c.53.1.1 33345 1hyuA 521 1.99e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1m93A 55 2.04e+00 e.1.1.1 91235 1iz5A 249 2.15e+00 d.131.1.2,d.131.1.2 83834,83835 1xn5A 146 2.45e+00 1qhlA 227 4.03e+00 1qhlA c.37.1.12 32382 1lwjA 441 4.94e+00 b.71.1.1,c.1.8.1 74303,74304 2fclA 169 5.44e+00 2ewrA 170 5.44e+00 1repC 251 6.79e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2cxcA 144 7.25e+00 1p8kZ 254 7.68e+00 d.95.2.1,d.95.2.1 94361,94362 1evuA 731 7.78e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1sqsA 242 7.83e+00 c.23.5.5 98968 1ex0A 731 8.87e+00 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1u2xA 474 8.87e+00 c.72.1.3 107622 1od8A 313 8.97e+00 c.1.8.3 86838 1rwzA 245 9.10e+00 d.131.1.2,d.131.1.2 98005,98006 1o58A 303 9.54e+00 c.79.1.1 92491 1tf1A 198 9.59e+00 d.110.2.2 106826 2bg5A 324 9.77e+00 2afbA 351 1.01e+01 1pnsC 206 1.05e+01 i.1.1.1 88170 1ygs 234 1.08e+01 1ygs b.26.1.1 23907 1v0lA 313 1.11e+01 c.1.8.3 108207 1e0wA 313 1.13e+01 1taxA c.1.8.3 59150 1vqzA 341 1.13e+01 1y96B 85 1.17e+01 1j5vA 351 1.19e+01 c.72.1.1 71585 1vr4A 103 1.21e+01 1x8dA 104 1.23e+01 1wspA 84 1.31e+01 1ur1A 378 1.33e+01 c.1.8.3 99804 1a0rP 245 1.36e+01 1b9yC c.47.1.6 33054 1xewY 172 1.37e+01 2b33A 140 1.42e+01 1igs 248 1.45e+01 1a53 c.1.2.4 28565 1e9rA 437 1.49e+01 c.37.1.11 64827 1ri5A 298 1.51e+01 c.66.1.34 97502 1a53 247 1.55e+01 1a53 c.1.2.4 28564 2pil 159 1.56e+01 2pil d.24.1.1 38376 1cby 259 1.59e+01 1cby d.103.1.1 40705 2gfgA 193 1.62e+01 1reqB 637 1.73e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1n8kA 374 1.77e+01 b.35.1.2,c.2.1.1 80298,80299 1hetA 374 1.79e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 2ohxA 374 1.79e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1c52 131 1.82e+01 1c52 a.3.1.1 15810 1of8A 370 1.87e+01 c.1.10.4 92819 1fhgA 154 1.88e+01 1tlk b.1.1.4 21706 1tiqA 180 2.03e+01 d.108.1.1 107010 1tlk 154 2.05e+01 1tlk b.1.1.4 21707 1wmhB 86 2.22e+01 1qavA 90 2.29e+01 1qauA b.36.1.1 24777 1ycyA 71 2.32e+01 1f5jA 199 2.33e+01 1axkA b.29.1.11 24342 1ryjA 70 2.33e+01 d.15.3.2 98104 1exg 110 2.35e+01 1exg b.2.2.1 22387 2gw6A 123 2.38e+01 1bia 321 2.41e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1qi9A 556 2.44e+01 1qhbA a.111.1.2 19053 1gyxA 76 2.44e+01 d.80.1.1 76387 1tluA 130 2.51e+01 d.156.1.2 107139 1tljA 213 2.55e+01 d.282.1.1 107126 1hqz1 141 2.58e+01 1o6dA 163 2.58e+01 c.116.1.3 92567 1h09A 338 2.60e+01 b.109.1.1,c.1.8.8 83420,83421 1vr7A 142 2.60e+01 1k38A 254 2.66e+01 e.3.1.1 84303 1o1zA 234 2.68e+01 c.1.18.3 86555 1ri6A 343 2.71e+01 b.69.11.1 97503 1yiyA 429 2.85e+01 1xttA 216 2.88e+01 1ockA 412 2.89e+01 c.117.1.1 86802 2amhA 207 2.90e+01 1m07A 111 2.91e+01 d.5.1.1 78328 1ih8A 271 2.91e+01 2nsyA c.26.2.1 62377 2g6tA 306 2.91e+01 1pyfA 312 2.96e+01 c.1.7.1 95334 1kqpA 271 2.97e+01 c.26.2.1 72883 2aefA 234 3.06e+01 2b7eA 59 3.17e+01 1njhA 119 3.18e+01 b.128.1.1 85787 1qlmA 316 3.22e+01 1qlmA d.147.1.1 41765 1h4gA 207 3.26e+01 b.29.1.11 70863 2ab5A 269 3.31e+01 1eceA 358 3.35e+01 1eceA c.1.8.3 28813 2cxaA 256 3.37e+01 1c7qA 445 3.40e+01 2pgi c.80.1.2 35307 2c3zA 222 3.46e+01 2adoA 196 3.49e+01 1ej0A 180 3.52e+01 1ej0A c.66.1.2 34179 1b25A 619 3.56e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1es6A 296 3.65e+01 1es6A b.31.1.1,b.31.1.1 83048,83049 1dkuA 317 3.65e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1u3wA 374 3.68e+01 1ma3A 253 3.69e+01 c.31.1.5 78883 2g9iA 249 3.70e+01 2myr 501 3.83e+01 1sek 378 3.92e+01 1sek e.1.1.1 42675 1hdoA 206 3.94e+01 1he2A c.2.1.2 60965 1vm6A 228 3.96e+01 c.2.1.3,d.81.1.3 108876,108877 1e0tA 470 3.99e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2etxA 209 4.01e+01 1fzqA 181 4.11e+01 1hurA c.37.1.8 32060 1a99A 344 4.13e+01 1pot c.94.1.1 35812 1pp0A 199 4.17e+01 d.103.1.1 104211 1o57A 291 4.20e+01 a.4.5.40,c.61.1.1 92483,92484 1o0pA 104 4.24e+01 d.58.7.1 86535 1f2tB 148 4.29e+01 1f2tB 1c7nA 399 4.29e+01 1d2fA c.67.1.3 34413 1wkqA 164 4.43e+01 c.97.1.2 109393 1qh7A 207 4.53e+01 1axkA b.29.1.11 24317 1woqA 267 4.56e+01 c.55.1.10,c.55.1.10 109462,109463 1sr4B 261 4.59e+01 d.151.1.1 105949 1fjgC 239 4.60e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1gewA 356 4.72e+01 1gewA c.67.1.1 60470 2fh7A 595 4.87e+01 8rucI 123 4.88e+01 1rboC d.73.1.1 39629 1mo9A 523 4.88e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1id0A 152 4.88e+01 d.122.1.3 66111 1regX 122 4.89e+01 1regX d.58.27.1 39406 2adbA 148 4.90e+01 1pbjA 125 4.93e+01 d.37.1.1,d.37.1.1 94414,94415 1zpvA 91 4.95e+01 1g0sA 209 4.97e+01 1g0sA d.113.1.1 60187 1xfcA 384 5.02e+01 1nq6A 302 5.08e+01 c.1.8.3 92046 1tuoA 464 5.12e+01 1larA 575 5.15e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1fw9A 164 5.19e+01 1fw9A d.190.1.1 60059 1tt8A 164 5.19e+01 1vk4A 298 5.21e+01 c.72.1.1 100850 1yizA 429 5.23e+01 1vcvA 226 5.26e+01 1fg7A 356 5.28e+01 1gewA c.67.1.1 59819 1vjpA 394 5.31e+01 c.2.1.3,d.81.1.3 100828,100829 1vddA 228 5.33e+01 e.49.1.1 108519 1shsA 147 5.37e+01 1shsA b.15.1.1 23675 1xhfA 123 5.40e+01 1fhdA 312 5.42e+01 1taxA c.1.8.3 28915 1zp4A 304 5.43e+01 1vbvA 105 5.43e+01 1vkuA 100 5.50e+01 a.28.1.1 108690 1ede 310 5.54e+01 1b6g c.69.1.8 34662 1flcA 432 5.55e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1ta3B 303 5.56e+01 c.1.8.3 106732 1fh9A 312 5.60e+01 1taxA c.1.8.3 28913 1d2oA 187 5.65e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1h7zA 194 5.92e+01 1qhvA b.21.1.1 60733 1xdpA 687 5.99e+01 1bby 69 6.04e+01 2bby a.4.5.15 16149 1w9zA 283 6.17e+01 2flsA 132 6.19e+01 1nf3C 128 6.26e+01 b.36.1.1 85596 1qopB 396 6.30e+01 2tysB c.79.1.1 35270 1t0aA 159 6.30e+01 1h72C 296 6.32e+01 d.14.1.5,d.58.26.1 60712,60713 1i8fA 81 6.35e+01 1i8fA b.38.1.1 61959 1jhsA 188 6.36e+01 d.107.1.1 84172 1te7A 103 6.37e+01 1h2cA 140 6.37e+01 b.31.1.1 83462 2g50A 530 6.43e+01 2his 312 6.47e+01 1taxA c.1.8.3 28918 1aq0A 306 6.51e+01 1aq0A c.1.8.3 28842 1fc1A 224 6.51e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 1wcdJ 441 6.52e+01 1wlyA 333 6.59e+01 1r5jA 337 6.62e+01 c.77.1.5 97097 1ydyA 356 6.75e+01 2hvm 273 6.75e+01 1cnv c.1.8.5 28985 1no5A 114 6.84e+01 d.218.1.5 92014 1l9xA 315 6.89e+01 c.23.16.1 73762 1oa2A 218 6.92e+01 b.29.1.11 86721 1s0pA 176 6.96e+01 a.192.1.1 98300 1h8vA 218 6.98e+01 2nlrA b.29.1.11 60795 1juvA 193 7.04e+01 c.71.1.1 90912 1b6g 310 7.06e+01 1b6g c.69.1.8 34661 2dfkA 402 7.08e+01 1cc1S 283 7.10e+01 2frvA e.19.1.1 43313 1mixA 206 7.23e+01 a.11.2.1,b.55.1.5 79166,79167 4pfk 319 7.26e+01 3pfk c.89.1.1 35582 1o98A 511 7.33e+01 c.105.1.1,c.76.1.3 86684,86685 1pbgA 468 7.43e+01 1e70M c.1.8.4 28946 1urnA 97 7.52e+01 1urnA d.58.7.1 39153 1ri7A 171 7.54e+01 a.4.5.32,d.58.4.2 97504,97505 1xkqA 280 7.56e+01 2culA 232 7.56e+01 3seb 238 7.68e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1a8q 274 7.72e+01 1brt c.69.1.12 34702 2gvkA 317 7.78e+01 1wouA 123 7.95e+01 c.47.1.16 109471 1e4mM 501 8.01e+01 1e70M c.1.8.4 59226 1t8qA 336 8.04e+01 c.1.18.3 106669 1zxxA 319 8.06e+01 1eqjA 511 8.10e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 2bsdA 264 8.14e+01 1zruA 264 8.20e+01 1b5tA 275 8.52e+01 1b5tA c.1.23.1 29676 1uc7A 125 8.56e+01 c.47.1.1 99163 2d9rA 104 8.57e+01 1b77A 228 8.62e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1enwA 114 8.67e+01 1enwA a.5.4.1 16291 1vhqA 232 8.71e+01 c.23.16.2 100696 1xkiA 162 8.79e+01 1s29A 92 8.79e+01 a.4.5.46 98373 1ft5A 211 8.80e+01 1bvb a.138.1.3 19681 1xseA 295 8.87e+01 1g6gA 127 8.92e+01 1g6gA b.26.1.2 23916 2bo4A 397 8.92e+01