# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wspA 84 1.49e+00 1svpA 161 1.53e+00 1svpA b.47.1.3 26384 1d2oA 187 1.89e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1cf7B 95 2.62e+00 1cf7B a.4.5.17 16152 2etxA 209 2.76e+00 1hyuA 521 3.10e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2adoA 196 3.57e+00 1hrkA 359 3.81e+00 1hrkA c.92.1.1 61228 1ma3A 253 5.99e+00 c.31.1.5 78883 1z6oA 212 6.47e+00 1repC 251 8.09e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1xwvA 129 1.03e+01 1gkzA 388 1.11e+01 a.29.5.1,d.122.1.4 65268,65269 1ktjA 129 1.13e+01 b.1.18.7 72974 1pnsC 206 1.18e+01 i.1.1.1 88170 1fjgC 239 1.25e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1pu1A 94 1.27e+01 d.266.1.1 104307 1o7dE 126 1.41e+01 1vkuA 100 1.44e+01 a.28.1.1 108690 1v5nA 89 1.71e+01 g.49.1.3 108380 1y96B 85 1.72e+01 1ppjE 196 1.75e+01 b.33.1.1,f.23.12.1 104260,104261 1zynA 202 1.93e+01 1w2yA 229 1.95e+01 a.204.1.1 109140 1gyxA 76 2.02e+01 d.80.1.1 76387 1z57A 339 2.04e+01 1oiaA 95 2.39e+01 d.58.7.1 87051 1vlqA 337 2.55e+01 c.69.1.25 108848 1u6bA 98 2.78e+01 d.58.7.1 107703 1x4tA 92 2.79e+01 1zvdA 380 2.85e+01 2ez6A 221 2.99e+01 1bby 69 3.05e+01 2bby a.4.5.15 16149 1yukA 103 3.07e+01 1nu4A 97 3.20e+01 d.58.7.1 80731 1o0pA 104 3.39e+01 d.58.7.1 86535 1q9uA 130 3.40e+01 d.129.7.1 96314 1urnA 97 3.47e+01 1urnA d.58.7.1 39153 1k0hA 117 3.58e+01 b.106.1.2 71975 1qopB 396 3.87e+01 2tysB c.79.1.1 35270 2rslA 140 3.92e+01 2rslA c.53.1.1 33345 1snlA 103 3.95e+01 a.39.1.7 105820 1f06A 320 4.06e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1wfeA 86 4.30e+01 1wy6A 172 4.42e+01 1hqz1 141 4.58e+01 1knzA 164 4.70e+01 e.34.1.1 68709 1uheA 97 4.77e+01 1p5vA 235 4.89e+01 b.1.11.1,b.7.2.1 87812,87813 2flsA 132 4.90e+01 1jk0A 419 5.36e+01 a.25.1.2 63142 2bpa1 426 5.50e+01 2bpa1 2b7eA 59 5.58e+01 1vfrA 218 5.60e+01 1vfrA d.90.1.1 40247 1vq3A 94 5.71e+01 1vdyA 140 5.74e+01 1vpzA 73 5.74e+01 1s6lA 212 5.75e+01 2d3jA 157 5.84e+01 1dj7B 75 5.95e+01 1dj7B b.34.4.3 24598 1tlk 154 5.96e+01 1tlk b.1.1.4 21707 1fhgA 154 5.97e+01 1tlk b.1.1.4 21706 1in0A 163 6.06e+01 d.58.49.1,d.58.49.1 83694,83695 2gw6A 123 6.06e+01 1vp2A 208 6.17e+01 2b33A 140 6.20e+01 2bh4X 134 6.23e+01 1ucrA 78 6.28e+01 a.4.5.45 99188 2g3aA 152 6.45e+01 1utiA 58 6.53e+01 b.34.2.1 99962 1t7sA 137 6.62e+01 a.7.7.1 106636 2bwbA 46 6.69e+01 1n13B 113 6.74e+01 1rr7A 129 6.80e+01 a.4.1.14 105075 1vor4 46 6.82e+01 1zdzA 302 6.91e+01 2ewrA 170 7.06e+01 2a6vA 226 7.23e+01 1yl37 47 7.32e+01 1eg2A 319 7.44e+01 1eg2A c.66.1.11 34249 1njhA 119 7.55e+01 b.128.1.1 85787 1xn5A 146 7.59e+01 1jk4A 89 7.59e+01 b.9.1.1 77130 2bleA 367 7.74e+01 2c7hA 86 7.77e+01 1m07A 111 7.96e+01 d.5.1.1 78328 1yg6A 193 8.36e+01 1mszA 86 8.51e+01 d.68.7.1 79428 2etdA 171 8.70e+01 2b7yA 182 8.95e+01