# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2oA 187 1.34e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1hyuA 521 1.58e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1zynA 202 2.11e+00 1repC 251 2.29e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1d2pA 373 2.33e+00 1d2oA b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1 22629,22630,22631,22632 1esfA 233 3.06e+00 3seb b.40.2.2,d.15.6.1 25146,37735 1xwvA 129 6.08e+00 1ghtA 105 7.18e+00 2rslA c.53.1.1 60526 1y96B 85 7.57e+00 1wspA 84 7.62e+00 1svpA 161 8.42e+00 1svpA b.47.1.3 26384 2ewrA 170 8.48e+00 1vlqA 337 8.58e+00 c.69.1.25 108848 1d3uA 181 8.84e+00 1ytbA d.129.1.1,d.129.1.1 41290,41291 1pczA 191 8.89e+00 1ytbA d.129.1.1,d.129.1.1 41292,41293 2adoA 196 1.03e+01 2fclA 169 1.07e+01 1aisA 182 1.09e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2rslA 140 1.20e+01 2rslA c.53.1.1 33345 1hrkA 359 1.28e+01 1hrkA c.92.1.1 61228 1ld4A 264 1.32e+01 i.6.1.1 77886 1agnA 373 1.35e+01 2ohxA b.35.1.2,c.2.1.1 24737,29753 1dyqA 234 1.36e+01 3seb b.40.2.2,d.15.6.1 59140,59141 2snv 151 1.39e+01 1svpA b.47.1.3 26394 2etxA 209 1.47e+01 1qdlB 195 1.55e+01 1qdlB c.23.16.1 31437 1m93A 55 1.69e+01 e.1.1.1 91235 1pnsC 206 1.69e+01 i.1.1.1 88170 1nsyA 271 1.75e+01 2nsyA c.26.2.1 31614 1snlA 103 1.98e+01 a.39.1.7 105820 1fjgC 239 2.03e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1ih8A 271 2.03e+01 2nsyA c.26.2.1 62377 1gdtA 183 2.06e+01 2rslA a.4.1.2,c.53.1.1 16021,33348 5gcnA 166 2.07e+01 1yghA d.108.1.1 40807 1j5eC 239 2.08e+01 d.52.3.1,d.53.1.1 71544,71545 1cf7B 95 2.22e+01 1cf7B a.4.5.17 16152 1ma3A 253 2.27e+01 c.31.1.5 78883 1rr7A 129 2.36e+01 a.4.1.14 105075 2bwbA 46 2.54e+01 1iz5A 249 2.61e+01 d.131.1.2,d.131.1.2 83834,83835 2nsyA 271 2.66e+01 2nsyA c.26.2.1 31612 1xhfA 123 2.81e+01 1ktjA 129 2.86e+01 b.1.18.7 72974 1vkuA 100 2.87e+01 a.28.1.1 108690 1ydmA 187 2.88e+01 2b7eA 59 2.91e+01 1kqpA 271 2.92e+01 c.26.2.1 72883 1pms 136 2.95e+01 1awe b.55.1.1 26966 1agjA 242 2.96e+01 1agjA b.47.1.1 25827 1o7dE 126 3.00e+01 1m5oC 100 3.11e+01 d.58.7.1 78654 1utiA 58 3.28e+01 b.34.2.1 99962 1mdc 133 3.53e+01 1hmt b.60.1.2 27198 1z6oA 212 3.64e+01 1audA 101 3.68e+01 1urnA d.58.7.1 39156 1x4tA 92 3.71e+01 1kq3A 376 3.72e+01 e.22.1.2 68790 2fdrA 229 3.76e+01 2gw6A 123 3.85e+01 2d3jA 157 3.98e+01 1urnA 97 3.98e+01 1urnA d.58.7.1 39153 1qvaA 223 4.04e+01 1qvaA c.37.1.19 32411 1ibsA 317 4.13e+01 c.61.1.2,c.61.1.2 66107,66108 1u6bA 98 4.30e+01 d.58.7.1 107703 2tysB 397 4.52e+01 2tysB c.79.1.1 35272 1vqoL 165 4.54e+01 1lab 80 4.54e+01 1ghj b.84.1.1 28226 1nu4A 97 4.55e+01 d.58.7.1 80731 2flsA 132 4.59e+01 1kyqA 274 4.60e+01 c.2.1.11,e.37.1.1 73281,73282 1zx5A 300 4.60e+01 1cx0A 95 4.61e+01 1urnA d.58.7.1 39158 1a0rP 245 4.62e+01 1b9yC c.47.1.6 33054 1wr1B 58 4.65e+01 1knzA 164 4.67e+01 e.34.1.1 68709 2bby 69 4.91e+01 2bby a.4.5.15 16148 1jj2K 164 4.95e+01 1ffkJ c.12.1.1 63096 1dkrA 317 4.99e+01 1dkuA c.61.1.2,c.61.1.2 34114,34115 1s72L 165 5.03e+01 c.12.1.1 105331 1a50B 396 5.03e+01 2tysB c.79.1.1 35280 1bby 69 5.05e+01 2bby a.4.5.15 16149 1qopB 396 5.28e+01 2tysB c.79.1.1 35270 2b33A 140 5.41e+01 1dkuA 317 5.44e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1sqsA 242 5.51e+01 c.23.5.5 98968 1k8yB 396 5.53e+01 c.79.1.1 72184 1gh6A 114 5.54e+01 a.2.3.1 65191 1wwhA 119 5.58e+01 1mioB 458 5.67e+01 1qguB c.92.2.3 35602 1lwjA 441 5.80e+01 b.71.1.1,c.1.8.1 74303,74304 1v5nA 89 6.42e+01 g.49.1.3 108380 5pal 109 6.54e+01 1a75A a.39.1.4 17215 1vgvA 384 6.69e+01 c.87.1.3 100608 1focA 132 6.80e+01 1c52 a.3.1.1 15812 1zpsA 138 6.83e+01 1bksB 397 6.85e+01 2tysB c.79.1.1 35285 2as9A 210 7.09e+01 1qhlA 227 7.13e+01 1qhlA c.37.1.12 32382 1ukkA 142 7.26e+01 d.227.1.1 99491 1gyxA 76 7.39e+01 d.80.1.1 76387 1in0A 163 7.45e+01 d.58.49.1,d.58.49.1 83694,83695 1ucrA 78 7.46e+01 a.4.5.45 99188 1f6dA 376 7.51e+01 1f6dA c.87.1.3 35467 1exrA 148 7.53e+01 1cll a.39.1.5 17299 1dj7B 75 7.92e+01 1dj7B b.34.4.3 24598 1vr8A 142 8.00e+01 1oiaA 95 8.07e+01 d.58.7.1 87051 1nhcA 336 8.26e+01 b.80.1.3 91879 1e0wA 313 8.35e+01 1taxA c.1.8.3 59150 1shsA 147 8.35e+01 1shsA b.15.1.1 23675 1gkzA 388 8.66e+01 a.29.5.1,d.122.1.4 65268,65269 1w2yA 229 8.74e+01 a.204.1.1 109140 1s55A 156 8.80e+01 2wsyB 396 8.83e+01 2tysB c.79.1.1 35288 1ge8A 249 8.86e+01 1plq d.131.1.2,d.131.1.2 41398,41399 1ahk 129 8.95e+01 1a9v b.1.18.7 21945