# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pms 136 1.88e+00 1awe b.55.1.1 26966 1hyuA 521 2.40e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1svpA 161 2.43e+00 1svpA b.47.1.3 26384 1cf7B 95 2.55e+00 1cf7B a.4.5.17 16152 1ld4A 264 2.65e+00 i.6.1.1 77886 1wspA 84 2.88e+00 2snv 151 3.11e+00 1svpA b.47.1.3 26394 1d2oA 187 3.43e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1gh6A 114 4.06e+00 a.2.3.1 65191 2etxA 209 4.09e+00 2adoA 196 4.63e+00 1d2pA 373 5.76e+00 1d2oA b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1 22629,22630,22631,22632 1ghtA 105 6.17e+00 2rslA c.53.1.1 60526 1xwvA 129 6.41e+00 1repC 251 7.58e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1hrkA 359 7.79e+00 1hrkA c.92.1.1 61228 1zynA 202 8.40e+00 1ktjA 129 1.04e+01 b.1.18.7 72974 1z6oA 212 1.06e+01 1ma3A 253 1.09e+01 c.31.1.5 78883 1lab 80 1.20e+01 1ghj b.84.1.1 28226 1pnsC 206 1.48e+01 i.1.1.1 88170 1y96B 85 1.81e+01 1q9uA 130 1.84e+01 d.129.7.1 96314 1fjgC 239 1.93e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 2b33A 140 1.96e+01 2tysB 397 2.06e+01 2tysB c.79.1.1 35272 1snlA 103 2.10e+01 a.39.1.7 105820 1j5eC 239 2.11e+01 d.52.3.1,d.53.1.1 71544,71545 1w2yA 229 2.16e+01 a.204.1.1 109140 1uheA 97 2.21e+01 1agnA 373 2.25e+01 2ohxA b.35.1.2,c.2.1.1 24737,29753 2rslA 140 2.30e+01 2rslA c.53.1.1 33345 1bksB 397 2.43e+01 2tysB c.79.1.1 35285 1ppjE 196 2.47e+01 b.33.1.1,f.23.12.1 104260,104261 1t7sA 137 2.60e+01 a.7.7.1 106636 1pu1A 94 2.61e+01 d.266.1.1 104307 2c7hA 86 2.68e+01 1qopB 396 2.68e+01 2tysB c.79.1.1 35270 1bgyE 196 2.73e+01 1bgyE f.23.12.1 43683 1a50B 396 2.74e+01 2tysB c.79.1.1 35280 2b7eA 59 2.76e+01 1k8yB 396 2.80e+01 c.79.1.1 72184 2wsyB 396 2.81e+01 2tysB c.79.1.1 35288 2bby 69 2.88e+01 2bby a.4.5.15 16148 1gkxA 388 2.95e+01 a.29.5.1,d.122.1.4 65266,65267 1gkzA 388 3.02e+01 a.29.5.1,d.122.1.4 65268,65269 1qhhA 167 3.19e+01 1pjr c.37.1.19 32393 1awe 130 3.20e+01 1awe b.55.1.1 26968 1o7dE 126 3.25e+01 1vlqA 337 3.35e+01 c.69.1.25 108848 1x4tA 92 3.45e+01 2ez6A 221 3.48e+01 1bby 69 3.54e+01 2bby a.4.5.15 16149 1gyxA 76 3.79e+01 d.80.1.1 76387 1cf7A 76 4.11e+01 1cf7B a.4.5.17 16151 2apsA 162 4.34e+01 1yaiA b.1.8.1 22298 2fdrA 229 4.36e+01 1qvaA 223 4.39e+01 1qvaA c.37.1.19 32411 1p5vA 235 4.43e+01 b.1.11.1,b.7.2.1 87812,87813 1u6bA 98 4.54e+01 d.58.7.1 107703 1wy6A 172 4.57e+01 1oiaA 95 4.74e+01 d.58.7.1 87051 2gw6A 123 4.93e+01 2flsA 132 5.05e+01 1cx0A 95 5.07e+01 1urnA d.58.7.1 39158 1focA 132 5.09e+01 1c52 a.3.1.1 15812 1jk0A 419 5.25e+01 a.25.1.2 63142 1al0F 426 5.26e+01 2bpa1 b.121.5.1 23274 1urnA 97 5.29e+01 1urnA d.58.7.1 39153 1qdlB 195 5.34e+01 1qdlB c.23.16.1 31437 1l4aD 87 5.47e+01 h.1.15.1 73562 1jk4A 89 5.49e+01 b.9.1.1 77130 1nu4A 97 5.56e+01 d.58.7.1 80731 1knzA 164 5.62e+01 e.34.1.1 68709 1mszA 86 5.63e+01 d.68.7.1 79428 1zc3B 113 5.80e+01 1xewY 172 5.85e+01 1vkuA 100 5.87e+01 a.28.1.1 108690 1vq3A 94 5.93e+01 1zvdA 380 6.08e+01 1s72I 162 6.14e+01 a.4.7.1 105328 1m5oC 100 6.16e+01 d.58.7.1 78654 1esfA 233 6.16e+01 3seb b.40.2.2,d.15.6.1 25146,37735 2bwbA 46 6.29e+01 1ot5A 477 6.29e+01 b.18.1.20,c.41.1.1 87409,87410 1mnmC 87 6.32e+01 1akhB a.4.1.1 15983 1in0A 163 6.33e+01 d.58.49.1,d.58.49.1 83694,83695 2bpa1 426 6.50e+01 2bpa1 1vdyA 140 6.54e+01 1xn5A 146 6.75e+01 1fqvD 149 6.90e+01 1fqvD a.157.1.1,d.42.1.1 19263,38667 1f3uA 118 6.90e+01 1f3uA b.65.1.1 27521 1shsA 147 6.93e+01 1shsA b.15.1.1 23675 1audA 101 6.95e+01 1urnA d.58.7.1 39156 1s6lA 212 7.01e+01 1y32A 24 7.18e+01 2dfkA 402 7.40e+01 1lm6A 215 7.42e+01 d.167.1.1 84628 1vor4 46 7.50e+01 1z57A 339 7.72e+01 1yukA 103 7.76e+01 1r64A 481 7.86e+01 b.18.1.20,c.41.1.1 97140,97141 1dbhA 354 8.12e+01 1awe a.87.1.1,b.55.1.1 18514,26967 3c2c 112 8.14e+01 1ycc a.3.1.1 15885 1z94A 147 8.17e+01 1ftpA 133 8.24e+01 1hmt b.60.1.2 27199 2d3jA 157 8.32e+01 2astA 159 8.51e+01 1s9rA 410 8.53e+01 d.126.1.4 98758 1quqB 121 8.54e+01 1quqB b.40.4.3 25305 1keoA 154 8.59e+01 b.64.1.1 68534 1yb3A 175 8.61e+01 2a6vA 226 8.68e+01 2bn2A 95 8.74e+01 1npoA b.9.1.1 23266