# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 1.91e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1xn5A 146 1.62e+00 1c7nA 399 2.00e+00 1d2fA c.67.1.3 34413 1d2oA 187 2.56e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1iz5A 249 2.71e+00 d.131.1.2,d.131.1.2 83834,83835 1ydmA 187 3.09e+00 2rslA 140 3.35e+00 2rslA c.53.1.1 33345 1wspA 84 3.48e+00 1qhlA 227 3.75e+00 1qhlA c.37.1.12 32382 1mixA 206 3.99e+00 a.11.2.1,b.55.1.5 79166,79167 1e9rA 437 4.80e+00 c.37.1.11 64827 1m93A 55 5.31e+00 e.1.1.1 91235 1yiyA 429 5.49e+00 1hqz1 141 5.83e+00 1yizA 429 6.28e+00 2afbA 351 7.89e+00 2fclA 169 7.98e+00 2cxcA 144 8.64e+00 1sqsA 242 9.50e+00 c.23.5.5 98968 3seb 238 1.01e+01 3seb b.40.2.2,d.15.6.1 25184,37773 2gw6A 123 1.11e+01 1oa2A 218 1.15e+01 b.29.1.11 86721 1qavA 90 1.15e+01 1qauA b.36.1.1 24777 1fhgA 154 1.20e+01 1tlk b.1.1.4 21706 1xf1A 926 1.35e+01 1rwzA 245 1.39e+01 d.131.1.2,d.131.1.2 98005,98006 1ma3A 253 1.43e+01 c.31.1.5 78883 2b7eA 59 1.51e+01 2bg5A 324 1.56e+01 1vr7A 142 1.69e+01 1xewY 172 1.74e+01 1ur1A 378 1.86e+01 c.1.8.3 99804 1ri5A 298 1.87e+01 c.66.1.34 97502 1pp0A 199 1.93e+01 d.103.1.1 104211 1b25A 619 1.96e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1wmhB 86 2.04e+01 1rp4A 389 2.17e+01 a.227.1.1 105027 2aefA 234 2.17e+01 1o58A 303 2.45e+01 c.79.1.1 92491 1zpvA 91 2.47e+01 1hdoA 206 2.56e+01 1he2A c.2.1.2 60965 2f86B 143 2.58e+01 1xwvA 129 2.63e+01 1qi9A 556 2.69e+01 1qhbA a.111.1.2 19053 2amhA 207 2.75e+01 1repC 251 2.79e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1ft5A 211 2.83e+01 1bvb a.138.1.3 19681 1sr4B 261 2.84e+01 d.151.1.1 105949 1n8kA 374 3.03e+01 b.35.1.2,c.2.1.1 80298,80299 1h72C 296 3.04e+01 d.14.1.5,d.58.26.1 60712,60713 1ockA 412 3.07e+01 c.117.1.1 86802 1u3wA 374 3.14e+01 1pyfA 312 3.18e+01 c.1.7.1 95334 1c7qA 445 3.21e+01 2pgi c.80.1.2 35307 1vckA 115 3.27e+01 1l6xA 207 3.28e+01 b.1.1.2,b.1.1.2 73642,73643 1epwA 1290 3.34e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1sek 378 3.41e+01 1sek e.1.1.1 42675 2cygA 312 3.60e+01 1ahsA 126 3.76e+01 1ahsA b.19.1.1 23794 1r75A 141 3.84e+01 b.134.1.1 97189 2fh7A 595 3.88e+01 1bo4A 168 3.88e+01 1bo4A d.108.1.1 40798 1o57A 291 3.95e+01 a.4.5.40,c.61.1.1 92483,92484 1v0lA 313 4.05e+01 c.1.8.3 108207 1cby 259 4.14e+01 1cby d.103.1.1 40705 1fr3A 67 4.15e+01 1fr3A b.40.6.1 25436 1njhA 119 4.17e+01 b.128.1.1 85787 1w7lA 422 4.39e+01 c.67.1.1 109226 1tt8A 164 4.56e+01 1quqB 121 4.59e+01 1quqB b.40.4.3 25305 1bia 321 4.61e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1xyiA 66 4.64e+01 1g0sA 209 4.66e+01 1g0sA d.113.1.1 60187 1p3cA 215 4.75e+01 b.47.1.1 93996 1e0tA 470 4.77e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2dfkA 402 4.77e+01 1s55A 156 4.90e+01 2g9iA 249 4.95e+01 1qlmA 316 5.00e+01 1qlmA d.147.1.1 41765 1vbvA 105 5.00e+01 1r77A 103 5.15e+01 1regX 122 5.19e+01 1regX d.58.27.1 39406 2g6tA 306 5.22e+01 1fg7A 356 5.24e+01 1gewA c.67.1.1 59819 1h7zA 194 5.27e+01 1qhvA b.21.1.1 60733 1vqoL 165 5.27e+01 1xfcA 384 5.40e+01 1lqtA 456 5.45e+01 c.3.1.1,c.4.1.1 74198,74199 1tiqA 180 5.53e+01 d.108.1.1 107010 1vjpA 394 5.65e+01 c.2.1.3,d.81.1.3 100828,100829 1t0aA 159 5.80e+01 1ten 90 5.97e+01 1ten b.1.2.1 21990 1ej0A 180 6.11e+01 1ej0A c.66.1.2 34179 1e4mM 501 6.21e+01 1e70M c.1.8.4 59226 2gmqA 118 6.21e+01 1zp4A 304 6.24e+01 1nwwA 149 6.47e+01 d.17.4.8 86306 2g5dA 422 6.49e+01 1o1zA 234 6.55e+01 c.1.18.3 86555 1vddA 228 6.62e+01 e.49.1.1 108519 1exg 110 6.62e+01 1exg b.2.2.1 22387 1g6gA 127 6.69e+01 1g6gA b.26.1.2 23916 1vphA 149 6.75e+01 1h09A 338 6.80e+01 b.109.1.1,c.1.8.8 83420,83421 1o6dA 163 6.82e+01 c.116.1.3 92567 2ab5A 269 6.88e+01 1qvcA 145 6.99e+01 3ullA b.40.4.3 25284 1kqpA 271 7.03e+01 c.26.2.1 72883 1a8q 274 7.11e+01 1brt c.69.1.12 34702 1tf1A 198 7.20e+01 d.110.2.2 106826 1nf3C 128 7.27e+01 b.36.1.1 85596 2culA 232 7.43e+01 1c52 131 7.47e+01 1c52 a.3.1.1 15810 1eg2A 319 7.54e+01 1eg2A c.66.1.11 34249 2gfgA 193 7.67e+01 1eceA 358 7.72e+01 1eceA c.1.8.3 28813 1a53 247 7.90e+01 1a53 c.1.2.4 28564 1wmhA 89 7.91e+01 1bby 69 7.98e+01 2bby a.4.5.15 16149 2aq4A 434 8.07e+01 1mdc 133 8.25e+01 1hmt b.60.1.2 27198 1zpsA 138 8.35e+01 2f6hX 419 8.37e+01 1f2tB 148 8.41e+01 1f2tB 1xcbA 211 8.45e+01 a.4.5.38,c.2.1.12 109552,109553 1e9gA 286 8.57e+01 1wgjA b.40.5.1 59393 1fh9A 312 8.63e+01 1taxA c.1.8.3 28913 1gd1O 334 8.65e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1ze3C 205 8.85e+01 1wlyA 333 8.91e+01