# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2oA 187 3.98e-01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1repC 251 7.26e-01 1repC a.4.5.10,a.4.5.10 16125,16126 1xwvA 129 2.16e+00 1y96B 85 2.75e+00 1wspA 84 2.77e+00 1svpA 161 3.10e+00 1svpA b.47.1.3 26384 2fclA 169 4.05e+00 1aisA 182 4.14e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 2rslA 140 4.59e+00 2rslA c.53.1.1 33345 1hrkA 359 4.93e+00 1hrkA c.92.1.1 61228 1dyqA 234 5.28e+00 3seb b.40.2.2,d.15.6.1 59140,59141 2etxA 209 5.74e+00 1m93A 55 6.71e+00 e.1.1.1 91235 1cf7B 95 9.06e+00 1cf7B a.4.5.17 16152 1ma3A 253 9.27e+00 c.31.1.5 78883 1rr7A 129 9.67e+00 a.4.1.14 105075 2bwbA 46 1.05e+01 1iz5A 249 1.08e+01 d.131.1.2,d.131.1.2 83834,83835 1vkuA 100 1.20e+01 a.28.1.1 108690 1ydmA 187 1.21e+01 2b7eA 59 1.22e+01 1kqpA 271 1.22e+01 c.26.2.1 72883 1agjA 242 1.24e+01 1agjA b.47.1.1 25827 1o7dE 126 1.26e+01 1utiA 58 1.39e+01 b.34.2.1 99962 1mdc 133 1.51e+01 1hmt b.60.1.2 27198 1z6oA 212 1.56e+01 1x4tA 92 1.59e+01 1kq3A 376 1.59e+01 e.22.1.2 68790 2fdrA 229 1.62e+01 2gw6A 123 1.66e+01 2d3jA 157 1.72e+01 1vqoL 165 1.99e+01 1nu4A 97 1.99e+01 d.58.7.1 80731 2flsA 132 2.01e+01 1kyqA 274 2.01e+01 c.2.1.11,e.37.1.1 73281,73282 1zx5A 300 2.01e+01 1knzA 164 2.05e+01 e.34.1.1 68709 1bby 69 2.23e+01 2bby a.4.5.15 16149 1qopB 396 2.34e+01 2tysB c.79.1.1 35270 1dkuA 317 2.42e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1sqsA 242 2.45e+01 c.23.5.5 98968 1wwhA 119 2.49e+01 5pal 109 2.96e+01 1a75A a.39.1.4 17215 1zpsA 138 3.10e+01 2as9A 210 3.23e+01 1qhlA 227 3.25e+01 1qhlA c.37.1.12 32382 1ukkA 142 3.31e+01 d.227.1.1 99491 1gyxA 76 3.38e+01 d.80.1.1 76387 1in0A 163 3.41e+01 d.58.49.1,d.58.49.1 83694,83695 1ucrA 78 3.41e+01 a.4.5.45 99188 1exrA 148 3.45e+01 1cll a.39.1.5 17299 1dj7B 75 3.64e+01 1dj7B b.34.4.3 24598 1vr8A 142 3.68e+01 1nhcA 336 3.81e+01 b.80.1.3 91879 1w2yA 229 4.05e+01 a.204.1.1 109140 1s55A 156 4.09e+01 1quqB 121 4.23e+01 1quqB b.40.4.3 25305 1ft5A 211 4.35e+01 1bvb a.138.1.3 19681 1sek 378 4.38e+01 1sek e.1.1.1 42675 1zthA 258 4.45e+01 1bn8A 420 4.46e+01 1pcl b.80.1.1 28022 1yf9A 171 4.50e+01 2a6vA 226 4.75e+01 2a33A 215 4.90e+01 1rqtA 37 5.18e+01 a.108.1.1 97771 2bg5A 324 5.47e+01 1c52 131 5.68e+01 1c52 a.3.1.1 15810 1gsoA 431 5.70e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1ulkA 126 5.74e+01 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561 1e9rA 437 5.80e+01 c.37.1.11 64827 1v0lA 313 5.86e+01 c.1.8.3 108207 1s0pA 176 5.86e+01 a.192.1.1 98300 2afbA 351 5.95e+01 1p5vA 235 6.05e+01 b.1.11.1,b.7.2.1 87812,87813 2gfgA 193 6.10e+01 1tt7A 330 6.30e+01 1tiqA 180 6.32e+01 d.108.1.1 107010 1wmhA 89 6.40e+01 1xcbA 211 6.46e+01 a.4.5.38,c.2.1.12 109552,109553 1q3lA 69 6.48e+01 1ygmA 118 6.49e+01 2g6tA 306 6.55e+01 1k0hA 117 6.57e+01 b.106.1.2 71975 1g79A 218 6.64e+01 1ci0A b.45.1.1 25752 1vqoI 162 6.82e+01 1n8jA 186 7.22e+01 c.47.1.10 85401 1k6kA 143 7.28e+01 a.174.1.1 77274 1wdnA 226 7.46e+01 1lst c.94.1.1 35816 1t0yA 122 7.59e+01 d.15.1.1 99066 1dnlA 199 7.71e+01 1ci0A b.45.1.1 25753 1s9rA 410 8.08e+01 d.126.1.4 98758 1ii7A 333 8.17e+01 1ii7A d.159.1.4 62415 2f6hX 419 8.24e+01 3c2c 112 8.40e+01 1ycc a.3.1.1 15885 1pyfA 312 8.45e+01 c.1.7.1 95334 2br9A 234 8.61e+01 1xn5A 146 8.63e+01 1z94A 147 8.82e+01 1regX 122 8.88e+01 1regX d.58.27.1 39406 1xiwA 105 8.98e+01