# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 3.17e-01 3seb b.40.2.2,d.15.6.1 59140,59141 2rslA 140 8.99e-01 2rslA c.53.1.1 33345 1iz5A 249 2.59e+00 d.131.1.2,d.131.1.2 83834,83835 1m93A 55 2.67e+00 e.1.1.1 91235 1sqsA 242 3.34e+00 c.23.5.5 98968 2afbA 351 4.49e+00 1qhlA 227 4.50e+00 1qhlA c.37.1.12 32382 1xn5A 146 4.86e+00 2fclA 169 5.36e+00 1ma3A 253 6.95e+00 c.31.1.5 78883 1repC 251 7.59e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2gw6A 123 7.63e+00 1c7nA 399 8.21e+00 1d2fA c.67.1.3 34413 1v0lA 313 8.24e+00 c.1.8.3 108207 1k38A 254 1.01e+01 e.3.1.1 84303 1d2oA 187 1.03e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1e9rA 437 1.21e+01 c.37.1.11 64827 1h72C 296 1.24e+01 d.14.1.5,d.58.26.1 60712,60713 1yiyA 429 1.30e+01 1qlmA 316 1.33e+01 1qlmA d.147.1.1 41765 1mixA 206 1.38e+01 a.11.2.1,b.55.1.5 79166,79167 1ydmA 187 1.41e+01 1wspA 84 1.43e+01 1bby 69 1.54e+01 2bby a.4.5.15 16149 1ur1A 378 1.58e+01 c.1.8.3 99804 1vkuA 100 1.61e+01 a.28.1.1 108690 2cxcA 144 1.63e+01 1fhgA 154 1.63e+01 1tlk b.1.1.4 21706 1ri5A 298 1.72e+01 c.66.1.34 97502 1tiqA 180 1.73e+01 d.108.1.1 107010 1c52 131 1.93e+01 1c52 a.3.1.1 15810 1sr4B 261 1.95e+01 d.151.1.1 105949 1n8kA 374 1.98e+01 b.35.1.2,c.2.1.1 80298,80299 1rwzA 245 2.01e+01 d.131.1.2,d.131.1.2 98005,98006 1yizA 429 2.05e+01 1ex0A 731 2.05e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1h09A 338 2.08e+01 b.109.1.1,c.1.8.8 83420,83421 1vqoI 162 2.08e+01 2gfgA 193 2.17e+01 2g6tA 306 2.23e+01 2b7eA 59 2.26e+01 1b25A 619 2.38e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1vr7A 142 2.69e+01 2bg5A 324 2.77e+01 1tf1A 198 2.92e+01 d.110.2.2 106826 1o57A 291 2.93e+01 a.4.5.40,c.61.1.1 92483,92484 4uagA 437 2.96e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1eceA 358 2.97e+01 1eceA c.1.8.3 28813 1cby 259 2.98e+01 1cby d.103.1.1 40705 1e0tA 470 3.08e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1xewY 172 3.13e+01 2amhA 207 3.15e+01 1bia 321 3.33e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1zp4A 304 3.42e+01 1u3wA 374 3.43e+01 2g9iA 249 3.46e+01 1kqpA 271 3.46e+01 c.26.2.1 72883 1qi9A 556 3.77e+01 1qhbA a.111.1.2 19053 1y96B 85 3.77e+01 2fh7A 595 3.82e+01 1qg8A 255 3.92e+01 1qg8A c.68.1.1 34505 1a99A 344 3.93e+01 1pot c.94.1.1 35812 1vddA 228 4.02e+01 e.49.1.1 108519 1nq6A 302 4.08e+01 c.1.8.3 92046 3seb 238 4.08e+01 3seb b.40.2.2,d.15.6.1 25184,37773 5nul 138 4.12e+01 5nul c.23.5.1 31191 2etxA 209 4.29e+01 1xfcA 384 4.33e+01 1hqz1 141 4.43e+01 1pp0A 199 4.43e+01 d.103.1.1 104211 1oa2A 218 4.44e+01 b.29.1.11 86721 1o58A 303 4.47e+01 c.79.1.1 92491 1o1zA 234 4.50e+01 c.1.18.3 86555 1sek 378 4.50e+01 1sek e.1.1.1 42675 1vbvA 105 4.51e+01 1xwvA 129 4.56e+01 1a53 247 4.75e+01 1a53 c.1.2.4 28564 1wmhB 86 4.78e+01 1pbjA 125 4.79e+01 d.37.1.1,d.37.1.1 94414,94415 1exg 110 4.84e+01 1exg b.2.2.1 22387 1nf3C 128 4.89e+01 b.36.1.1 85596 1reqB 637 5.05e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1bn8A 420 5.08e+01 1pcl b.80.1.1 28022 1c7qA 445 5.13e+01 2pgi c.80.1.2 35307 1wdnA 226 5.47e+01 1lst c.94.1.1 35816 1no5A 114 5.50e+01 d.218.1.5 92014 2culA 232 5.52e+01 1szoA 257 5.65e+01 c.14.1.3 106164 1woqA 267 5.68e+01 c.55.1.10,c.55.1.10 109462,109463 1ca1 370 5.69e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2tpt 440 5.75e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 2g50A 530 5.92e+01 1wcdJ 441 5.95e+01 2ab5A 269 6.02e+01 1h7zA 194 6.03e+01 1qhvA b.21.1.1 60733 1nijA 318 6.17e+01 c.37.1.10,d.237.1.1 85741,85742 1zpvA 91 6.22e+01 1qavA 90 6.30e+01 1qauA b.36.1.1 24777 1g0sA 209 6.37e+01 1g0sA d.113.1.1 60187 7a3hA 303 6.42e+01 7a3hA c.1.8.3 28817 1l6xA 207 6.53e+01 b.1.1.2,b.1.1.2 73642,73643 1wqaA 455 6.53e+01 1o6dA 163 6.55e+01 c.116.1.3 92567 1regX 122 6.56e+01 1regX d.58.27.1 39406 1o98A 511 6.60e+01 c.105.1.1,c.76.1.3 86684,86685 1vckA 115 6.69e+01 2czrA 226 6.72e+01 1b6g 310 6.74e+01 1b6g c.69.1.8 34661 1fh9A 312 6.78e+01 1taxA c.1.8.3 28913 1s55A 156 6.79e+01 1of8A 370 6.83e+01 c.1.10.4 92819 1ooyA 481 7.06e+01 c.124.1.3,c.124.1.2 93388,93389 2aq4A 434 7.09e+01 1m07A 111 7.20e+01 d.5.1.1 78328 2gh1A 301 7.28e+01 2hvm 273 7.32e+01 1cnv c.1.8.5 28985 1njhA 119 7.51e+01 b.128.1.1 85787 1ockA 412 7.57e+01 c.117.1.1 86802 1r77A 103 7.60e+01 1fzqA 181 7.61e+01 1hurA c.37.1.8 32060 2cygA 312 7.63e+01 1z0wA 207 7.64e+01 1qopB 396 7.70e+01 2tysB c.79.1.1 35270 1xcbA 211 7.72e+01 a.4.5.38,c.2.1.12 109552,109553 1wpuA 147 7.72e+01 1wmqA 147 7.74e+01 1a8q 274 7.84e+01 1brt c.69.1.12 34702 2bo4A 397 8.00e+01 1quqB 121 8.01e+01 1quqB b.40.4.3 25305 2flsA 132 8.01e+01 1fg7A 356 8.16e+01 1gewA c.67.1.1 59819 8rucI 123 8.30e+01 1rboC d.73.1.1 39629 1tt8A 164 8.52e+01 1kwiA 101 8.57e+01 d.17.1.3 77564 1ft5A 211 8.65e+01 1bvb a.138.1.3 19681 1ydyA 356 8.65e+01 1wmhA 89 8.67e+01 1w7lA 422 8.82e+01 c.67.1.1 109226 1j5xA 342 8.83e+01 c.80.1.1 71591 1r6jA 82 8.92e+01 b.36.1.1 97151 1wlyA 333 8.92e+01 1vphA 149 8.94e+01