# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 1.05e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1m93A 55 1.02e+00 e.1.1.1 91235 2rslA 140 1.16e+00 2rslA c.53.1.1 33345 1iz5A 249 1.25e+00 d.131.1.2,d.131.1.2 83834,83835 1qhlA 227 2.21e+00 1qhlA c.37.1.12 32382 1xn5A 146 2.44e+00 1sqsA 242 2.93e+00 c.23.5.5 98968 1repC 251 3.04e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2afbA 351 4.31e+00 2bg5A 324 4.78e+00 2cxcA 144 5.04e+00 1e9rA 437 5.65e+00 c.37.1.11 64827 1v0lA 313 5.89e+00 c.1.8.3 108207 1ur1A 378 6.73e+00 c.1.8.3 99804 2fclA 169 6.87e+00 1o58A 303 7.03e+00 c.79.1.1 92491 1xewY 172 7.73e+00 1h09A 338 7.86e+00 b.109.1.1,c.1.8.8 83420,83421 1y96B 85 8.19e+00 2gfgA 193 8.25e+00 1wspA 84 9.13e+00 1reqB 637 9.13e+00 1reqB c.1.19.1,c.23.6.1 29621,31248 2gw6A 123 9.33e+00 1ri5A 298 9.79e+00 c.66.1.34 97502 1c52 131 9.82e+00 1c52 a.3.1.1 15810 1a53 247 9.87e+00 1a53 c.1.2.4 28564 1ockA 412 9.96e+00 c.117.1.1 86802 1n8kA 374 1.02e+01 b.35.1.2,c.2.1.1 80298,80299 1tf1A 198 1.06e+01 d.110.2.2 106826 1rwzA 245 1.06e+01 d.131.1.2,d.131.1.2 98005,98006 1tiqA 180 1.26e+01 d.108.1.1 107010 1hqz1 141 1.27e+01 1hdoA 206 1.28e+01 1he2A c.2.1.2 60965 1wmhB 86 1.30e+01 1k38A 254 1.31e+01 e.3.1.1 84303 1cby 259 1.37e+01 1cby d.103.1.1 40705 1fhgA 154 1.37e+01 1tlk b.1.1.4 21706 1vr7A 142 1.38e+01 1o6dA 163 1.41e+01 c.116.1.3 92567 1gyxA 76 1.45e+01 d.80.1.1 76387 1qi9A 556 1.45e+01 1qhbA a.111.1.2 19053 1o1zA 234 1.48e+01 c.1.18.3 86555 2amhA 207 1.50e+01 2g6tA 306 1.54e+01 1h72C 296 1.60e+01 d.14.1.5,d.58.26.1 60712,60713 2aefA 234 1.69e+01 1qlmA 316 1.74e+01 1qlmA d.147.1.1 41765 1o57A 291 1.75e+01 a.4.5.40,c.61.1.1 92483,92484 1kqpA 271 1.76e+01 c.26.2.1 72883 1qavA 90 1.76e+01 1qauA b.36.1.1 24777 1of8A 370 1.78e+01 c.1.10.4 92819 1yiyA 429 1.78e+01 1ex0A 731 1.81e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2b7eA 59 1.86e+01 1e0tA 470 1.97e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1c7nA 399 2.02e+01 1d2fA c.67.1.3 34413 1woqA 267 2.09e+01 c.55.1.10,c.55.1.10 109462,109463 1c7qA 445 2.10e+01 2pgi c.80.1.2 35307 1pyfA 312 2.12e+01 c.1.7.1 95334 1sek 378 2.14e+01 1sek e.1.1.1 42675 1eceA 358 2.22e+01 1eceA c.1.8.3 28813 1u3wA 374 2.23e+01 1dkuA 317 2.24e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1b25A 619 2.25e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2etxA 209 2.29e+01 1nf3C 128 2.33e+01 b.36.1.1 85596 1ma3A 253 2.34e+01 c.31.1.5 78883 2g9iA 249 2.42e+01 1t0aA 159 2.46e+01 1zpvA 91 2.54e+01 1xfcA 384 2.55e+01 1vkuA 100 2.58e+01 a.28.1.1 108690 1vddA 228 2.60e+01 e.49.1.1 108519 2ab5A 269 2.63e+01 1tljA 213 2.63e+01 d.282.1.1 107126 1wkqA 164 2.69e+01 c.97.1.2 109393 1f2tB 148 2.76e+01 1f2tB 1regX 122 2.78e+01 1regX d.58.27.1 39406 1tt8A 164 3.03e+01 1vcvA 226 3.04e+01 1fzqA 181 3.09e+01 1hurA c.37.1.8 32060 1wlyA 333 3.12e+01 3seb 238 3.19e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1vfsA 386 3.20e+01 b.49.2.2,c.1.6.1 108584,108585 2fh7A 595 3.21e+01 1fh9A 312 3.22e+01 1taxA c.1.8.3 28913 1bia 321 3.24e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1wcdJ 441 3.27e+01 1yizA 429 3.29e+01 1g0sA 209 3.33e+01 1g0sA d.113.1.1 60187 1d2oA 187 3.34e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1oa2A 218 3.34e+01 b.29.1.11 86721 1xdpA 687 3.34e+01 1zp4A 304 3.37e+01 2hvm 273 3.41e+01 1cnv c.1.8.5 28985 1vk4A 298 3.46e+01 c.72.1.1 100850 1ta3B 303 3.46e+01 c.1.8.3 106732 1nq6A 302 3.50e+01 c.1.8.3 92046 1h7zA 194 3.53e+01 1qhvA b.21.1.1 60733 1fg7A 356 3.54e+01 1gewA c.67.1.1 59819 1bby 69 3.56e+01 2bby a.4.5.15 16149 1f5jA 199 3.59e+01 1axkA b.29.1.11 24342 8rucI 123 3.72e+01 1rboC d.73.1.1 39629 1te7A 103 3.83e+01 1qopB 396 3.89e+01 2tysB c.79.1.1 35270 2g50A 530 3.90e+01 1zxxA 319 3.93e+01 1exg 110 4.00e+01 1exg b.2.2.1 22387 1tuoA 464 4.04e+01 1pbjA 125 4.21e+01 d.37.1.1,d.37.1.1 94414,94415 1ydyA 356 4.22e+01 1no5A 114 4.27e+01 d.218.1.5 92014 2dfkA 402 4.29e+01 1juvA 193 4.32e+01 c.71.1.1 90912 1vjpA 394 4.35e+01 c.2.1.3,d.81.1.3 100828,100829 1s0pA 176 4.36e+01 a.192.1.1 98300 1sr4B 261 4.38e+01 d.151.1.1 105949 1mixA 206 4.39e+01 a.11.2.1,b.55.1.5 79166,79167 1m07A 111 4.41e+01 d.5.1.1 78328 1pp0A 199 4.43e+01 d.103.1.1 104211 2culA 232 4.54e+01 2cxaA 256 4.61e+01 1i8fA 81 4.66e+01 1i8fA b.38.1.1 61959 1o98A 511 4.77e+01 c.105.1.1,c.76.1.3 86684,86685 1a99A 344 4.78e+01 1pot c.94.1.1 35812 1x8dA 104 4.78e+01 1a8q 274 4.80e+01 1brt c.69.1.12 34702 1njhA 119 4.81e+01 b.128.1.1 85787 1vbvA 105 4.86e+01 1b6g 310 4.87e+01 1b6g c.69.1.8 34661 1sn4A 64 5.12e+01 1aho g.3.7.1 44136 1wouA 123 5.16e+01 c.47.1.16 109471 1b77A 228 5.22e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 2bo4A 397 5.31e+01 1uc7A 125 5.31e+01 c.47.1.1 99163 1ft5A 211 5.33e+01 1bvb a.138.1.3 19681 1s29A 92 5.35e+01 a.4.5.46 98373 1s55A 156 5.42e+01 1wrjA 156 5.51e+01 1jhsA 188 5.52e+01 d.107.1.1 84172 1enwA 114 5.60e+01 1enwA a.5.4.1 16291 1uekA 275 5.60e+01 d.14.1.5,d.58.26.5 88483,88484 1l6xA 207 5.61e+01 b.1.1.2,b.1.1.2 73642,73643 2gvkA 317 5.63e+01 1e4mM 501 5.63e+01 1e70M c.1.8.4 59226 2tpt 440 5.66e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1vphA 149 5.67e+01 2aq4A 434 5.75e+01 2d1pA 140 5.80e+01 1dljA 402 5.81e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2ptd 298 5.86e+01 2plc c.1.18.2 29605 1ydmA 187 5.90e+01 1udc 338 5.90e+01 1xel c.2.1.2 29785 1q8bA 105 6.02e+01 d.58.4.6 96201 1u09A 476 6.04e+01 e.8.1.4 107545 1id0A 152 6.14e+01 d.122.1.3 66111 1bn8A 420 6.16e+01 1pcl b.80.1.1 28022 2f6hX 419 6.20e+01 1toaA 313 6.32e+01 1toaA c.92.2.2 35598 1vckA 115 6.37e+01 1whbA 157 6.40e+01 1duvG 333 6.48e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1ys4A 354 6.54e+01 1ns5A 155 6.61e+01 c.116.1.3 80705 1fr3A 67 6.74e+01 1fr3A b.40.6.1 25436 1s50A 259 6.78e+01 1g291 372 6.80e+01 1g291 1vr4A 103 6.85e+01 1o0yA 260 6.88e+01 c.1.10.1 80756 1ylqA 96 6.95e+01 1ri6A 343 6.96e+01 b.69.11.1 97503 1ksiA 642 7.19e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2d9rA 104 7.26e+01 1u9cA 224 7.32e+01 1ve0A 134 7.40e+01 1h4vB 421 7.48e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1vqoI 162 7.50e+01 1m12A 84 7.53e+01 a.64.1.1 84745 1y9aA 360 7.57e+01 1nrlA 316 7.59e+01 a.123.1.1 92091 2apoA 357 7.65e+01 2awpA 198 7.76e+01 1pm1X 180 7.77e+01 b.60.1.1 104189 1vicA 262 7.95e+01 c.68.1.13 100756 1u0kA 288 7.96e+01 d.21.1.2,d.21.1.2 107547,107548 1o9gA 250 8.01e+01 c.66.1.29 86692 1uheA 97 8.05e+01 1luzA 88 8.14e+01 b.40.4.5 74271 2b2aA 199 8.17e+01 1vhqA 232 8.19e+01 c.23.16.2 100696 1wmhA 89 8.23e+01 1r6jA 82 8.24e+01 b.36.1.1 97151 1my6A 199 8.30e+01 a.2.11.1,d.44.1.1 85232,85233 1gntA 553 8.30e+01 e.26.1.1 70290 1x74A 360 8.32e+01 1kk8B 139 8.32e+01 a.39.1.5 77430 1k77A 260 8.34e+01 c.1.15.5 72096 1bg6 359 8.39e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1vp2A 208 8.48e+01 1gxqA 106 8.54e+01 a.4.6.1 70721 1oj4A 283 8.62e+01 d.14.1.5,d.58.26.5 93083,93084 1cf7B 95 8.63e+01 1cf7B a.4.5.17 16152 1wu3I 161 8.69e+01 2bngA 149 8.71e+01 1i6lA 328 8.72e+01 c.26.1.1 66041 1vbuA 328 8.72e+01 1tygB 87 8.73e+01 d.15.3.2 107455 2a1fA 247 8.78e+01 1j1vA 94 8.80e+01 a.4.12.2 83981 2cygA 312 8.86e+01 1szoA 257 8.89e+01 c.14.1.3 106164 2fkcA 247 8.89e+01 1f9vA 347 8.91e+01 1bg2 c.37.1.9 59745 1ni4A 365 8.92e+01 c.36.1.11 85728 1avqA 228 8.96e+01 1avqA c.52.1.13 33326 1zruA 264 8.99e+01 2gh1A 301 9.00e+01