# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 2.83e-01 3seb b.40.2.2,d.15.6.1 59140,59141 2rslA 140 4.95e-01 2rslA c.53.1.1 33345 2fclA 169 9.97e-01 1m93A 55 1.13e+00 e.1.1.1 91235 2afbA 351 1.50e+00 2bg5A 324 1.80e+00 1d2oA 187 2.08e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1regX 122 2.65e+00 1regX d.58.27.1 39406 1kqpA 271 3.74e+00 c.26.2.1 72883 1zp4A 304 3.93e+00 1qhlA 227 4.43e+00 1qhlA c.37.1.12 32382 1repC 251 4.50e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2flsA 132 4.85e+00 1xwvA 129 4.99e+00 2asbA 251 5.12e+00 2g9iA 249 5.13e+00 1h72C 296 5.25e+00 d.14.1.5,d.58.26.1 60712,60713 1s55A 156 5.38e+00 1gyxA 76 5.38e+00 d.80.1.1 76387 1vr7A 142 5.76e+00 1tiqA 180 6.13e+00 d.108.1.1 107010 1oa2A 218 7.07e+00 b.29.1.11 86721 1iz5A 249 7.51e+00 d.131.1.2,d.131.1.2 83834,83835 1c52 131 8.65e+00 1c52 a.3.1.1 15810 2gw6A 123 8.97e+00 1yb2A 275 9.72e+00 1a99A 344 9.75e+00 1pot c.94.1.1 35812 1b25A 619 1.01e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 4uagA 437 1.02e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1wmqA 147 1.06e+01 1k38A 254 1.06e+01 e.3.1.1 84303 1juvA 193 1.06e+01 c.71.1.1 90912 1sqsA 242 1.07e+01 c.23.5.5 98968 2gmqA 118 1.08e+01 2gfgA 193 1.12e+01 1u00A 227 1.13e+01 1i8fA 81 1.18e+01 1i8fA b.38.1.1 61959 1wpuA 147 1.24e+01 2fh7A 595 1.24e+01 1x74A 360 1.37e+01 2b7eA 59 1.40e+01 1qavA 90 1.43e+01 1qauA b.36.1.1 24777 1p35A 299 1.44e+01 1p35A b.28.1.1 23925 2cxcA 144 1.46e+01 1tf1A 198 1.51e+01 d.110.2.2 106826 1qlmA 316 1.52e+01 1qlmA d.147.1.1 41765 1ll2A 333 1.53e+01 c.68.1.14 74005 1m07A 111 1.54e+01 d.5.1.1 78328 1sek 378 1.59e+01 1sek e.1.1.1 42675 1t0aA 159 1.67e+01 1qi9A 556 1.74e+01 1qhbA a.111.1.2 19053 1s9rA 410 1.77e+01 d.126.1.4 98758 1y96B 85 1.79e+01 1zpvA 91 1.80e+01 1tygB 87 1.83e+01 d.15.3.2 107455 1hdoA 206 1.92e+01 1he2A c.2.1.2 60965 1wlyA 333 1.93e+01 1ma3A 253 1.94e+01 c.31.1.5 78883 2aefA 234 1.95e+01 1ydmA 187 2.03e+01 1quqB 121 2.09e+01 1quqB b.40.4.3 25305 1o58A 303 2.16e+01 c.79.1.1 92491 1e9rA 437 2.19e+01 c.37.1.11 64827 1ur1A 378 2.19e+01 c.1.8.3 99804 1xdpA 687 2.19e+01 1ft5A 211 2.21e+01 1bvb a.138.1.3 19681 1wlzA 105 2.22e+01 1bg6 359 2.23e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1njhA 119 2.26e+01 b.128.1.1 85787 1b56 135 2.29e+01 1hmt b.60.1.2 27183 1ns5A 155 2.30e+01 c.116.1.3 80705 1m4jA 142 2.51e+01 d.109.1.2 78602 1uc7A 125 2.53e+01 c.47.1.1 99163 1duvG 333 2.55e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1o6dA 163 2.58e+01 c.116.1.3 92567 1a53 247 2.58e+01 1a53 c.1.2.4 28564 2etxA 209 2.59e+01 1hqz1 141 2.64e+01 1o0yA 260 2.64e+01 c.1.10.1 80756 1bn8A 420 2.69e+01 1pcl b.80.1.1 28022 1xyiA 66 2.70e+01 1e4mM 501 2.71e+01 1e70M c.1.8.4 59226 1bby 69 2.74e+01 2bby a.4.5.15 16149 1dkuA 317 2.80e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 2bwbA 46 2.81e+01 1zthA 258 2.88e+01 2bo4A 397 3.00e+01 2bce 581 3.02e+01 2bce c.69.1.1 34625 1vcvA 226 3.02e+01 1epwA 1290 3.03e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1o1zA 234 3.04e+01 c.1.18.3 86555 1j1vA 94 3.05e+01 a.4.12.2 83981 1xtoA 311 3.13e+01 1p8xA 344 3.14e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1fg7A 356 3.14e+01 1gewA c.67.1.1 59819 2dfkA 402 3.15e+01 1n8jA 186 3.24e+01 c.47.1.10 85401 1ex0A 731 3.26e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2a41C 32 3.34e+01 1wrjA 156 3.38e+01 1v93A 296 3.39e+01 c.1.23.1 100532 1qzgA 187 3.42e+01 b.40.4.3 96643 1v0lA 313 3.46e+01 c.1.8.3 108207 1ti6B 274 3.49e+01 b.3.5.1,d.58.1.5 106976,106977 1ydyA 356 3.49e+01 3seb 238 3.52e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1ve6A 582 3.55e+01 2cxaA 256 3.62e+01 2fcjA 119 3.64e+01 1fhgA 154 3.67e+01 1tlk b.1.1.4 21706 2bwfA 77 3.76e+01 1xkiA 162 3.77e+01 1wcdJ 441 3.78e+01 1h4gA 207 3.79e+01 b.29.1.11 70863 1wu3I 161 3.84e+01 1yr2A 741 3.86e+01 1oj4A 283 3.88e+01 d.14.1.5,d.58.26.5 93083,93084 5nul 138 3.90e+01 5nul c.23.5.1 31191 1i6lA 328 3.94e+01 c.26.1.1 66041 1n8kA 374 3.95e+01 b.35.1.2,c.2.1.1 80298,80299 1vjpA 394 4.09e+01 c.2.1.3,d.81.1.3 100828,100829 1nijA 318 4.09e+01 c.37.1.10,d.237.1.1 85741,85742 1cfr 285 4.12e+01 1cfr c.52.1.7 33312 1exg 110 4.13e+01 1exg b.2.2.1 22387 1f9vA 347 4.16e+01 1bg2 c.37.1.9 59745 1mixA 206 4.20e+01 a.11.2.1,b.55.1.5 79166,79167 1ok7A 366 4.29e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1vqoL 165 4.35e+01 1u3wA 374 4.36e+01 2trcP 217 4.37e+01 1b9yC c.47.1.6 33051 1rr7A 129 4.47e+01 a.4.1.14 105075 1xrjA 261 4.49e+01 1o57A 291 4.53e+01 a.4.5.40,c.61.1.1 92483,92484 1jy5A 212 4.54e+01 d.124.1.1 71940 1gs5A 258 4.56e+01 c.73.1.2 70395 1r64A 481 4.57e+01 b.18.1.20,c.41.1.1 97140,97141 1vicA 262 4.58e+01 c.68.1.13 100756 1tueA 212 4.59e+01 c.37.1.20 107323 2f42A 179 4.61e+01 1a8q 274 4.62e+01 1brt c.69.1.12 34702 2as9A 210 4.64e+01 1s0pA 176 4.69e+01 a.192.1.1 98300 1uj2A 252 4.78e+01 c.37.1.6 99452 2trxA 108 4.87e+01 1thx c.47.1.1 32719 1iwmA 186 4.97e+01 b.125.1.2 83758 1idk 359 5.03e+01 1qcxA b.80.1.2 28025 1pyfA 312 5.10e+01 c.1.7.1 95334 2f6hX 419 5.13e+01 1iruK 201 5.14e+01 d.153.1.4 71362 1q3lA 69 5.15e+01 1squA 155 5.16e+01 d.252.1.1 98971 1h6lA 353 5.44e+01 b.68.3.1 60687 1wq8A 110 5.57e+01 1ptf 88 5.59e+01 1ptf d.94.1.1 40549 2b2aA 199 5.64e+01 1ta8A 332 5.68e+01 1u46A 291 5.72e+01 d.144.1.7 107656 1fsgA 233 5.73e+01 1qk3A c.61.1.1 34029 1mdc 133 5.74e+01 1hmt b.60.1.2 27198 1vddA 228 5.76e+01 e.49.1.1 108519 2av5A 120 5.87e+01 1i8dA 213 5.88e+01 b.43.4.3,b.43.4.3 61953,61954 1l6xA 207 5.89e+01 b.1.1.2,b.1.1.2 73642,73643 1f5jA 199 5.99e+01 1axkA b.29.1.11 24342 1tt8A 164 6.02e+01 2gi3A 476 6.06e+01 1svpA 161 6.09e+01 1svpA b.47.1.3 26384 1f2tB 148 6.11e+01 1f2tB 1e0tA 470 6.15e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1yq5A 144 6.24e+01 1vkuA 100 6.25e+01 a.28.1.1 108690 1i58A 189 6.29e+01 1b3qA d.122.1.3 61773 1v95A 130 6.36e+01 c.51.1.1 108435 1ve0A 134 6.39e+01 1q1oA 98 6.47e+01 d.15.2.2 95596 1y2tA 142 6.68e+01 2fn0A 437 6.74e+01 1c7qA 445 6.76e+01 2pgi c.80.1.2 35307 1qopB 396 6.78e+01 2tysB c.79.1.1 35270 1j5wA 298 6.86e+01 d.104.1.1 71589 1b6g 310 6.86e+01 1b6g c.69.1.8 34661 1zxxA 319 6.90e+01 1khbA 625 6.91e+01 c.91.1.1,c.109.1.1 68606,68607 1wwhA 119 6.93e+01 1y96A 86 6.99e+01 1v30A 124 7.10e+01 1p4xA 250 7.17e+01 a.4.5.28,a.4.5.28 87784,87785 1g0sA 209 7.17e+01 1g0sA d.113.1.1 60187 2amhA 207 7.22e+01 1kwiA 101 7.25e+01 d.17.1.3 77564 1no5A 114 7.29e+01 d.218.1.5 92014 2btiA 63 7.34e+01 1wywA 230 7.36e+01 1z7aA 308 7.38e+01 1uheA 97 7.40e+01 1zc6A 305 7.46e+01 1ri5A 298 7.55e+01 c.66.1.34 97502 2aq4A 434 7.55e+01 1rwzA 245 7.58e+01 d.131.1.2,d.131.1.2 98005,98006 1i1qB 192 7.62e+01 1qdlB c.23.16.1 61544 2fk4A 75 7.73e+01 1z90A 469 7.76e+01 1z2uA 150 7.78e+01 1acf 125 7.88e+01 3nul d.110.1.1 40882 1meoA 209 7.93e+01 c.65.1.1 79035 1c7gA 456 8.02e+01 c.67.1.2 90415 1w94A 156 8.03e+01 1e6yA 569 8.08e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1y43B 173 8.08e+01 1fdr 248 8.08e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1h7zA 194 8.11e+01 1qhvA b.21.1.1 60733 1j5sA 463 8.23e+01 c.1.9.8 71580 2cygA 312 8.34e+01 1owfA 99 8.42e+01 a.55.1.1 87487 1wmhA 89 8.44e+01 1u09A 476 8.47e+01 e.8.1.4 107545 2gh1A 301 8.49e+01 2a67A 167 8.61e+01 1wxiA 275 8.65e+01 1bqbA 301 8.69e+01 1hyt d.92.1.2 58962 1wwjA 105 8.71e+01 1ebfA 358 8.71e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1ep0A 185 8.72e+01 1dzrA b.82.1.1 28080 1r1a1 287 8.72e+01 1aym1 1h09A 338 8.79e+01 b.109.1.1,c.1.8.8 83420,83421 1ej0A 180 8.89e+01 1ej0A c.66.1.2 34179 1dmuA 299 8.93e+01 1dmuA c.52.1.4 33294 1x8qA 184 8.97e+01